CV884252

Overview
NameCV884252
Unique NameCV884252
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length606
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884252 vs. ExPASy Swiss-Prot
Match: RL142_ARATH (60S ribosomal protein L14-2 OS=Arabidopsis thaliana GN=RPL14B PE=2 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 3.161e-58
Identity = 114/134 (85.07%), Postives = 124/134 (92.54%), Query Frame = 1
Query:   46 MPFKRYVEIGRVALVNYGKEYGRLVVIVDVLDQNRALVDAPDMVRGQMNFKRLSLTDIKIDIPRVPKKKTLIDAMEKADVKNKWESSSWGRKLIVQKKRASLNDFDRFKLMLAKIKKGGLVRQELAKLKKENAA 447
            M FKRYVEIGRVALVNYG+++G+LVVIVDV+DQNRALVDAPDM R QMNFKRLSLTDI IDI RVPKKK LI+AMEKADVKNKWE SSWGRKLIVQK+RA+LNDFDRFK+MLAKIKK G+VRQELAKLKKE  A
Sbjct:    1 MGFKRYVEIGRVALVNYGEDHGKLVVIVDVVDQNRALVDAPDMERIQMNFKRLSLTDIVIDINRVPKKKALIEAMEKADVKNKWEKSSWGRKLIVQKRRANLNDFDRFKIMLAKIKKAGVVRQELAKLKKEITA 134          
BLAST of CV884252 vs. ExPASy Swiss-Prot
Match: RL141_ARATH (60S ribosomal protein L14-1 OS=Arabidopsis thaliana GN=RPL14A PE=2 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 1.569e-57
Identity = 112/134 (83.58%), Postives = 124/134 (92.54%), Query Frame = 1
Query:   46 MPFKRYVEIGRVALVNYGKEYGRLVVIVDVLDQNRALVDAPDMVRGQMNFKRLSLTDIKIDIPRVPKKKTLIDAMEKADVKNKWESSSWGRKLIVQKKRASLNDFDRFKLMLAKIKKGGLVRQELAKLKKENAA 447
            M FKR+VEIGRVALVNYG++YG+LVVIVDV+DQNRALVDAPDM R QMN KRLSLTDI IDI RVPKKK LI+AMEKADVKNKWE SSWGRKLIVQK+RA+LNDFDRFK+MLAKIK+ G+VRQELAKLK+E AA
Sbjct:    1 MGFKRFVEIGRVALVNYGEDYGKLVVIVDVVDQNRALVDAPDMERIQMNLKRLSLTDIVIDINRVPKKKVLIEAMEKADVKNKWEKSSWGRKLIVQKRRAALNDFDRFKIMLAKIKRAGIVRQELAKLKREIAA 134          
BLAST of CV884252 vs. ExPASy Swiss-Prot
Match: RL14_PEA (Probable 60S ribosomal protein L14 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 2.769e-54
Identity = 106/133 (79.70%), Postives = 117/133 (87.97%), Query Frame = 1
Query:   46 MPFKRYVEIGRVALVNYGKEYGRLVVIVDVLDQNRALVDAPDMVRGQMNFKRLSLTDIKIDIPRVPKKKTLIDAMEKADVKNKWESSSWGRKLIVQKKRASLNDFDRFKLMLAKIKKGGLVRQELAKLKKENA 444
            MPFKR+VEIGRVAL+NYGK+YGRLVVIVDV+DQ RALVDAPDM R  +NFKRLSLTD+KIDI RVPKKK LI A+E ADVKNKW  SSWGRKLIV+K RA+LNDFDRFK+MLAKIK+   VRQELAKLKK  A
Sbjct:    1 MPFKRFVEIGRVALINYGKDYGRLVVIVDVIDQTRALVDAPDMERSPINFKRLSLTDLKIDIKRVPKKKDLIKALEAADVKNKWAKSSWGRKLIVKKTRAALNDFDRFKIMLAKIKRAAGVRQELAKLKKTAA 133          
BLAST of CV884252 vs. ExPASy Swiss-Prot
Match: RL14_LUMRU (60S ribosomal protein L14 OS=Lumbricus rubellus GN=RPL14 PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 9.918e-28
Identity = 64/132 (48.48%), Postives = 85/132 (64.39%), Query Frame = 1
Query:   46 MPFKRYVEIGRVALVNYGKEYGRLVVIVDVLDQNRALVDAP--DMVRGQMNFKRLSLTDIKIDIPRVPKKKTLIDAMEKADVKNKWESSSWGRKLIVQKKRASLNDFDRFKLMLAKIKKGGLVRQELAKLKK 435
            M F+R+VEIGRVA   YG + G+LV IVDV+DQNRALVD P   + R  MNFK L LT++K   P   K   +  A EK ++  KWE S   +K+  ++KR +L DF+RFKLM AK  +  L++ E  KL+K
Sbjct:    1 MSFRRFVEIGRVARAVYGPDQGKLVAIVDVIDQNRALVDGPCTHVARKSMNFKELELTNLKAKFPHSAKTGVVKKAWEKDEISKKWEESHLAKKIAAKEKRKTLTDFERFKLMKAKQARNRLIKIEFGKLRK 132          
BLAST of CV884252 vs. ExPASy Swiss-Prot
Match: RL14_MOUSE (60S ribosomal protein L14 OS=Mus musculus GN=Rpl14 PE=2 SV=3)

HSP 1 Score: 120.939 bits (302), Expect = 4.922e-27
Identity = 60/132 (45.45%), Postives = 90/132 (68.18%), Query Frame = 1
Query:   46 MPFKRYVEIGRVALVNYGKEYGRLVVIVDVLDQNRALVDAP-DMVRGQ-MNFKRLSLTDIKIDIPRVPKKKTLIDAMEKADVKNKWESSSWGRKLIVQKKRASLNDFDRFKLMLAKIKKGGLVRQELAKLKK 435
            M F+RYVE+GRVA +++G   G+LV IVDV+DQNRALVD P   VR Q M FK + LTD  +  P   ++K +  A EKAD+  KW ++ W +K+  ++++A + DFDRFK+M AK  +  +++ E+ KL++
Sbjct:    1 MVFRRYVEVGRVAYISFGPHAGKLVAIVDVIDQNRALVDGPCTRVRRQAMPFKCMQLTDFILKFPHSARQKYVRKAWEKADINTKWAATRWAKKIDARERKAKMTDFDRFKVMKAKKMRNRIIKTEVKKLQR 132          
BLAST of CV884252 vs. ExPASy Swiss-Prot
Match: RL14_PIG (60S ribosomal protein L14 OS=Sus scrofa GN=RPL14 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.097e-26
Identity = 59/132 (44.70%), Postives = 89/132 (67.42%), Query Frame = 1
Query:   46 MPFKRYVEIGRVALVNYGKEYGRLVVIVDVLDQNRALVDAP--DMVRGQMNFKRLSLTDIKIDIPRVPKKKTLIDAMEKADVKNKWESSSWGRKLIVQKKRASLNDFDRFKLMLAKIKKGGLVRQELAKLKK 435
            M F+R+VE+GRVA V++G   G+LV IVDV+DQNRALVD P   + R  M FK + LTD  +  P   ++K +  A EKAD+  KW ++ W +K+  ++K+A + DFDR+K+M A+  +  L++ E+ KL+K
Sbjct:    1 MVFRRFVEVGRVAYVSFGPHAGKLVAIVDVIDQNRALVDGPCTQVRRQAMPFKCMQLTDFILKFPHSARQKYVRKAWEKADINAKWAATRWAKKIEAREKKAKMTDFDRYKVMKARKMRNRLIKLEVKKLQK 132          
BLAST of CV884252 vs. ExPASy Swiss-Prot
Match: RL14_HUMAN (60S ribosomal protein L14 OS=Homo sapiens GN=RPL14 PE=1 SV=4)

HSP 1 Score: 119.783 bits (299), Expect = 1.097e-26
Identity = 58/132 (43.94%), Postives = 88/132 (66.67%), Query Frame = 1
Query:   46 MPFKRYVEIGRVALVNYGKEYGRLVVIVDVLDQNRALVDAP--DMVRGQMNFKRLSLTDIKIDIPRVPKKKTLIDAMEKADVKNKWESSSWGRKLIVQKKRASLNDFDRFKLMLAKIKKGGLVRQELAKLKK 435
            M F+R+VE+GRVA V++G   G+LV IVDV+DQNRALVD P   + R  M FK + LTD  +  P    +K +  A +KAD+  KW ++ W +K+  ++++A + DFDRFK+M AK  +  +++ E+ KL+K
Sbjct:    1 MVFRRFVEVGRVAYVSFGPHAGKLVAIVDVIDQNRALVDGPCTQVRRQAMPFKCMQLTDFILKFPHSAHQKYVRQAWQKADINTKWAATRWAKKIEARERKAKMTDFDRFKVMKAKKMRNRIIKNEVKKLQK 132          
BLAST of CV884252 vs. ExPASy Swiss-Prot
Match: RL14_RAT (60S ribosomal protein L14 OS=Rattus norvegicus GN=Rpl14 PE=1 SV=3)

HSP 1 Score: 119.398 bits (298), Expect = 1.432e-26
Identity = 59/132 (44.70%), Postives = 90/132 (68.18%), Query Frame = 1
Query:   46 MPFKRYVEIGRVALVNYGKEYGRLVVIVDVLDQNRALVDAP-DMVRGQ-MNFKRLSLTDIKIDIPRVPKKKTLIDAMEKADVKNKWESSSWGRKLIVQKKRASLNDFDRFKLMLAKIKKGGLVRQELAKLKK 435
            M F+R+VE+GRVA +++G   G+LV IVDV+DQNRALVD P   VR Q M FK + LTD  +  P   ++K +  A EKAD+  KW ++ W +K+  ++++A + DFDRFK+M AK  +  +++ E+ KL++
Sbjct:    1 MVFRRFVEVGRVAYISFGPHAGKLVAIVDVIDQNRALVDGPCTRVRRQAMPFKCMQLTDFILKFPHSARQKYVRKAWEKADINTKWAATRWAKKIDARERKAKMTDFDRFKVMKAKKMRNRIIKTEVKKLQR 132          
BLAST of CV884252 vs. ExPASy Swiss-Prot
Match: RL14_BOVIN (60S ribosomal protein L14 OS=Bos taurus GN=RPL14 PE=2 SV=3)

HSP 1 Score: 119.398 bits (298), Expect = 1.432e-26
Identity = 59/132 (44.70%), Postives = 89/132 (67.42%), Query Frame = 1
Query:   46 MPFKRYVEIGRVALVNYGKEYGRLVVIVDVLDQNRALVDAP--DMVRGQMNFKRLSLTDIKIDIPRVPKKKTLIDAMEKADVKNKWESSSWGRKLIVQKKRASLNDFDRFKLMLAKIKKGGLVRQELAKLKK 435
            M F+R+VE+GRVA V++G   G+LV IVDV+DQNRALVD P   + R  M FK + LTD  +  P   ++K +  A EKAD+  KW ++ W +K+  ++K+A + DFDR+K+M A+  +  L++ E+ KL+K
Sbjct:    1 MVFRRFVEVGRVAYVSFGPHAGKLVAIVDVIDQNRALVDGPCTQVRRQAMPFKCMQLTDFILKFPHSARQKYVRKAWEKADINAKWAATRWAKKIEAREKKAKMTDFDRYKVMKARKMRNRLIKIEVKKLQK 132          
BLAST of CV884252 vs. ExPASy Swiss-Prot
Match: RL14_GRIJA (60S ribosomal protein L14 OS=Griffithsia japonica GN=RPL14 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 5.442e-26
Identity = 65/132 (49.24%), Postives = 89/132 (67.42%), Query Frame = 1
Query:   46 MPFKRYVEIGRVALVNYGKEYGRLVVIVDVLDQNRALVDAPD--MVRGQMNFKRLSLTDIKI-DIPRVPKKKTLIDAMEKADVKNKWESSSWGRKLIVQKKRASLNDFDRFKLMLAKIKKGGLVRQELAKLK 432
            M F R+VE GRVALV+YG+   +LVVIVD+LDQNR LVD+P   + R  +N KR++LT IK+ DI R      +      A V   + +S WG+KL  ++KRA+L+DF RFK+M+A++KK   +  ELAKLK
Sbjct:    1 MTFTRFVEAGRVALVSYGEHLNKLVVIVDILDQNRILVDSPSHGLKRKVINVKRIALTSIKVDDIARGAPVAEVKSKYTAAKVDETFAASGWGKKLAKREKRAALDDFGRFKVMVARMKKSKAINAELAKLK 132          
The following BLAST results are available for this feature:
BLAST of CV884252 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
RL142_ARATH3.161e-5885.0760S ribosomal protein L14-2 OS=Arabidopsis thalian... [more]
RL141_ARATH1.569e-5783.5860S ribosomal protein L14-1 OS=Arabidopsis thalian... [more]
RL14_PEA2.769e-5479.70Probable 60S ribosomal protein L14 OS=Pisum sativu... [more]
RL14_LUMRU9.918e-2848.4860S ribosomal protein L14 OS=Lumbricus rubellus GN... [more]
RL14_MOUSE4.922e-2745.4560S ribosomal protein L14 OS=Mus musculus GN=Rpl14... [more]
RL14_PIG1.097e-2644.7060S ribosomal protein L14 OS=Sus scrofa GN=RPL14 P... [more]
RL14_HUMAN1.097e-2643.9460S ribosomal protein L14 OS=Homo sapiens GN=RPL14... [more]
RL14_RAT1.432e-2644.7060S ribosomal protein L14 OS=Rattus norvegicus GN=... [more]
RL14_BOVIN1.432e-2644.7060S ribosomal protein L14 OS=Bos taurus GN=RPL14 P... [more]
RL14_GRIJA5.442e-2649.2460S ribosomal protein L14 OS=Griffithsia japonica ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_002C03_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_002_T3_C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884252 ID=CV884252; Name=CV884252; organism=Citrus sinensis; type=EST; length=606bp
CTTCCTCACACAGCCACACACCATCACCAACCAGAATCCCCAAAAATGCC
GTTCAAGAGGTACGTGGAGATCGGGAGGGTCGCCCTCGTCAACTACGGCA
AAGAATACGGCAGGCTCGTCGTCATCGTAGATGTCTTAGATCAGAACAGA
GCTCTAGTTGATGCCCCTGATATGGTGAGAGGCCAAATGAACTTCAAGAG
GCTTTCACTGACTGATATCAAAATTGACATTCCCCGTGTACCGAAGAAGA
AGACATTGATTGATGCTATGGAGAAGGCTGATGTTAAGAACAAGTGGGAA
AGTAGCTCTTGGGGAAGAAAGCTGATTGTTCAGAAGAAGAGAGCATCACT
TAATGACTTTGACAGGTTCAAGCTTATGTTGGCCAAGATCAAGAAGGGAG
GTTTGGTCAGGCAGGAGCTTGCTAAGCTGAAGAAGGAGAATGCAGCCTAA
TGTTATCCGATGTGTAGCTTCCAATTTTGTTGTGATGATGGCTAAATTTT
CTTCAAGAACGTTTTACATTTATTTTTGTGTCAGTTCTGAGATTAAGACC
AATTTAAGGAGATGCTTTTTATATTATGATACTGTAGTCAGTGTTACCTG
CAAAAA
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