CV884240

Overview
NameCV884240
Unique NameCV884240
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length773
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884240 vs. ExPASy Swiss-Prot
Match: MYBB_XENLA (Myb-related protein B OS=Xenopus laevis GN=mybl2 PE=2 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 7.799e-32
Identity = 60/104 (57.69%), Postives = 78/104 (75.00%), Query Frame = 1
Query:  166 DRIKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRK 477
            D +KGPW+ EEDE +  LV+ YG ++W+LI+K + GR GK CR RW N L+P+V+   +T EED  I +AH   GN+WA IA+LL GRTDNA+KNHWNST+KRK
Sbjct:   80 DLVKGPWTKEEDEKVIELVKKYGTKHWTLIAKQLRGRMGKQCRERWHNHLNPEVKKSSWTEEEDRIICQAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRK 183          
BLAST of CV884240 vs. ExPASy Swiss-Prot
Match: MYBB_CHICK (Myb-related protein B OS=Gallus gallus GN=MYBL2 PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.737e-31
Identity = 62/122 (50.82%), Postives = 82/122 (67.21%), Query Frame = 1
Query:  166 DRIKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCSSMSDESQVDAINPLPL 531
            D +KGPW+ EED+ +  LV+ YG + W+LI+K + GR GK CR RW N L+P+V+   +T EED  I  AH   GN+WA IA+LL GRTDNA+KNHWNST+KRK  +    ++     PL L
Sbjct:   80 DLVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNHLNPEVKKSSWTEEEDRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRKVDTGGFLNETKESQPLYL 201          
BLAST of CV884240 vs. ExPASy Swiss-Prot
Match: MB3R1_ARATH (Myb-related protein 3R-1 OS=Arabidopsis thaliana GN=MYB3R-1 PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.963e-31
Identity = 59/120 (49.17%), Postives = 80/120 (66.67%), Query Frame = 1
Query:  172 IKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCSSMSDESQVDAINPLPL 531
            +KGPWS EED  +  LV+ YGP+ WS IS+ +PGR GK CR RW N L+P +    +T EE+ T++RAH  +GNKWA + + L GR+DN+IKNHWNS++K+K  S      +D     PL
Sbjct:   86 VKGPWSKEEDNTIIDLVEKYGPKKWSTISQHLPGRIGKQCRERWHNHLNPGINKNAWTQEEELTLIRAHQIYGNKWAELMKFLPGRSDNSIKNHWNSSVKKKLDSYYASGLLDQCQSSPL 205          
BLAST of CV884240 vs. ExPASy Swiss-Prot
Match: MYB_AVIMB (Transforming protein Myb OS=Avian myeloblastosis virus GN=V-MYB PE=1 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 5.055e-31
Identity = 59/101 (58.42%), Postives = 75/101 (74.26%), Query Frame = 1
Query:  175 KGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRK 477
            KGPW+ EED+ +   VQ YGP+ WS I+K + GR GK CR RW N L+P+V+   +T EED  I +AH R GN+WA IA+LL GRTDNA+KNHWNST++RK
Sbjct:   21 KGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRK 121          
BLAST of CV884240 vs. ExPASy Swiss-Prot
Match: MYBB_MOUSE (Myb-related protein B OS=Mus musculus GN=Mybl2 PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.126e-30
Identity = 58/104 (55.77%), Postives = 76/104 (73.08%), Query Frame = 1
Query:  166 DRIKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRK 477
            D +KGPW+ EED+ +  LV+ YG + W+LI+K + GR GK CR RW N L+P+V+   +T EED  I  AH   GN+WA IA++L GRTDNA+KNHWNST+KRK
Sbjct:   80 DLVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNHLNPEVKKSCWTEEEDRIICEAHKVLGNRWAEIAKMLPGRTDNAVKNHWNSTIKRK 183          
BLAST of CV884240 vs. ExPASy Swiss-Prot
Match: MYBB_HUMAN (Myb-related protein B OS=Homo sapiens GN=MYBL2 PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.126e-30
Identity = 58/104 (55.77%), Postives = 76/104 (73.08%), Query Frame = 1
Query:  166 DRIKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRK 477
            D +KGPW+ EED+ +  LV+ YG + W+LI+K + GR GK CR RW N L+P+V+   +T EED  I  AH   GN+WA IA++L GRTDNA+KNHWNST+KRK
Sbjct:   80 DLVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNHLNPEVKKSCWTEEEDRIICEAHKVLGNRWAEIAKMLPGRTDNAVKNHWNSTIKRK 183          
BLAST of CV884240 vs. ExPASy Swiss-Prot
Match: MYB_DROME (Myb protein OS=Drosophila melanogaster GN=Myb PE=1 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 2.509e-30
Identity = 56/102 (54.90%), Postives = 78/102 (76.47%), Query Frame = 1
Query:  172 IKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRK 477
            IKGPW+ +ED+ + +LV+N+GP+ W+LI++ + GR GK CR RW N L+P ++   +T +EDE I +AH   GN+WA IA+ L GRTDNAIKNHWNST++RK
Sbjct:  135 IKGPWTRDEDDMVIKLVRNFGPKKWTLIARYLNGRIGKQCRERWHNHLNPNIKKTAWTEKEDEIIYQAHLELGNQWAKIAKRLPGRTDNAIKNHWNSTMRRK 236          
BLAST of CV884240 vs. ExPASy Swiss-Prot
Match: MYBQ_DICDI (Myb-like protein Q OS=Dictyostelium discoideum GN=mybQ PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 5.589e-30
Identity = 59/102 (57.84%), Postives = 70/102 (68.63%), Query Frame = 1
Query:  172 IKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRK 477
            +KGPW  EED  L  LV   GP+ WS I+  IPGR GK CR RW N LSP+V    +TPEED+ I+ AHA  GNKW  I+++L GR  NAIKNHWNSTL +K
Sbjct:  276 VKGPWKDEEDAKLVELVNKCGPKEWSSIAAKIPGRIGKQCRERWFNHLSPEVRKTNWTPEEDKIIIDAHASLGNKWTAISKMLDGRPANAIKNHWNSTLLKK 377          
BLAST of CV884240 vs. ExPASy Swiss-Prot
Match: MYB98_ARATH (Transcription factor MYB98 OS=Arabidopsis thaliana GN=MYB98 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.988e-27
Identity = 64/150 (42.67%), Postives = 85/150 (56.67%), Query Frame = 1
Query:   52 CYNSTEIVRFLSLFYFFFEKKKLDFPCS*TMASTKKDVDRIKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNST-----LKRKCSS 486
            CY +T   +       F  +K      S +   TKK    +KG W+ EED  L +LV+ YG R WS I++ +PGR GK CR RW N L P ++   ++ EED  ++  H   GNKWA IA+ L GRT+N+IKNHWN+T      KRKC S
Sbjct:  181 CYRATSFNKTKP----FLTRKLSSSSSSSSWKETKKST-LVKGQWTAEEDRVLIQLVEKYGLRKWSHIAQVLPGRIGKQCRERWHNHLRPDIKKETWSEEEDRVLIEFHKEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQFSKRKCRS 325          
BLAST of CV884240 vs. ExPASy Swiss-Prot
Match: MYBAA_DICDI (Myb-like protein AA OS=Dictyostelium discoideum GN=mybAA PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.391e-27
Identity = 55/113 (48.67%), Postives = 77/113 (68.14%), Query Frame = 1
Query:  145 ASTKKDVDRIKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCS 483
            + +  +  + KG W+ EEDE L+ LV  +G + W  I+  +  R+G+ CR RW NQL P ++   +T EED  IL AH+++GNKWA I++LL GRT+ AIKNHWNST+KRK S
Sbjct:  747 SKSSSNESKAKGHWTKEEDEKLRSLVDLHGTKRWKYIASLLCLRNGRQCRERWSNQLDPSIKRDAWTLEEDRIILDAHSKYGNKWAEISKLLPGRTNCAIKNHWNSTMKRKLS 859          
The following BLAST results are available for this feature:
BLAST of CV884240 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
MYBB_XENLA7.799e-3257.69Myb-related protein B OS=Xenopus laevis GN=mybl2 P... [more]
MYBB_CHICK1.737e-3150.82Myb-related protein B OS=Gallus gallus GN=MYBL2 PE... [more]
MB3R1_ARATH2.963e-3149.17Myb-related protein 3R-1 OS=Arabidopsis thaliana G... [more]
MYB_AVIMB5.055e-3158.42Transforming protein Myb OS=Avian myeloblastosis v... [more]
MYBB_MOUSE1.126e-3055.77Myb-related protein B OS=Mus musculus GN=Mybl2 PE=... [more]
MYBB_HUMAN1.126e-3055.77Myb-related protein B OS=Homo sapiens GN=MYBL2 PE=... [more]
MYB_DROME2.509e-3054.90Myb protein OS=Drosophila melanogaster GN=Myb PE=1... [more]
MYBQ_DICDI5.589e-3057.84Myb-like protein Q OS=Dictyostelium discoideum GN=... [more]
MYB98_ARATH1.988e-2742.67Transcription factor MYB98 OS=Arabidopsis thaliana... [more]
MYBAA_DICDI3.391e-2748.67Myb-like protein AA OS=Dictyostelium discoideum GN... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_2_002B08_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_002_T3_B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884240 ID=CV884240; Name=CV884240; organism=Citrus sinensis; type=EST; length=773bp
GACGCTCAAGCCTCCACCATCACCACCTTCTAAACGAAATCAAAACCTCT
CTGCTATAACAGCACTGAGATAGTTAGATTCTTATCCTTGTTTTATTTTT
TTTTTGAAAAAAAAAAATTAGATTTTCCTTGTTCTTAAACCATGGCTTCG
ACCAAAAAAGATGTGGATCGGATCAAGGGTCCGTGGAGTCCAGAAGAAGA
TGAGGCGTTACAGAGGCTGGTACAAAACTACGGCCCTAGAAACTGGTCTT
TGATCAGTAAGTCGATCCCTGGCCGATCGGGCAAATCATGCCGGTTACGC
TGGTGTAACCAGCTGTCACCTCAGGTAGAACACAGACCGTTCACTCCTGA
AGAGGACGAGACTATACTTCGGGCCCACGCTCGGTTCGGTAACAAATGGG
CCACCATCGCTCGCCTCCTTAGCGGCCGGACCGATAACGCTATCAAAAAC
CACTGGAACTCCACTTTGAAGAGGAAATGCTCTTCCATGAGTGATGAGTC
GCAGGTAGATGCGATTAACCCGCTCCCGTTGAAAAGAGCGAACAGTGTGG
GGCCGAGCAATAATATTTCCGGGTTGTGTTTGAACCCGGGTAGTCCATCT
GGATCCGATTTGAGTGATTCAAGCTTACCCGGTGTGGCTCAGTCTCCAGT
TTGCCACCCCTTGTTTCGAACCGGATCGCTTGTTCCTGTCGAGACCTCAT
CTTCAACAACGGATCCACCAACGTCACTCAGCCTCTCGCTGCCCGGATCC
GAATCTTGTGAGGTCTCAAATCA
back to top