CV884240

Overview
NameCV884240
Unique NameCV884240
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length773
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884240 vs. ExPASy Swiss-Prot
Match: MYB44_ARATH (Transcription factor MYB44 OS=Arabidopsis thaliana GN=MYB44 PE=2 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 2.253e-55
Identity = 100/140 (71.43%), Postives = 115/140 (82.14%), Query Frame = 1
Query:  166 DRIKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCSSMSDESQVDAINPLPLKRANSVGPSNNISGLCLN 585
            DRIKGPWSPEEDE L+RLV  YGPRNW++ISKSIPGRSGKSCRLRWCNQLSPQVEHRPF+ EEDETI RAHA+FGNKWATIARLL+GRTDNA+KNHWNSTLKRKC          + +  P+KR+ S G    ++GL ++
Sbjct:    3 DRIKGPWSPEEDEQLRRLVVKYGPRNWTVISKSIPGRSGKSCRLRWCNQLSPQVEHRPFSAEEDETIARAHAQFGNKWATIARLLNGRTDNAVKNHWNSTLKRKCGGYDHRGYDGSEDHRPVKRSVSAGSPPVVTGLYMS 142          
BLAST of CV884240 vs. ExPASy Swiss-Prot
Match: MYB_MOUSE (Myb proto-oncogene protein OS=Mus musculus GN=Myb PE=1 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.166e-33
Identity = 67/134 (50.00%), Postives = 89/134 (66.42%), Query Frame = 1
Query:  172 IKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCSSMSDESQVDAINPLPLKRANSVGPSNNISG 573
            IKGPW+ EED+ +  LVQ YGP+ WS+I+K + GR GK CR RW N L+P+V+   +T EED  I +AH R GN+WA IA+LL GRTDNAIKNHWNST++RK        +    +  P+  A S   +N++ G
Sbjct:   91 IKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKVEQEGYLQEPSKASQTPV--ATSFQKNNHLMG 222          
BLAST of CV884240 vs. ExPASy Swiss-Prot
Match: MYB_XENLA (Myb protein OS=Xenopus laevis GN=myb PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 5.401e-33
Identity = 62/102 (60.78%), Postives = 77/102 (75.49%), Query Frame = 1
Query:  172 IKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRK 477
            IKGPW+ EED+ +  LV  YGP+ WS+I+K + GR GK CR RW N L+P+V+   +T EED TI  AH R GN+WA IA+LL GRTDNAIKNHWNST++RK
Sbjct:   88 IKGPWTKEEDQRVIELVHKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKSSWTEEEDRTIYEAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 189          
BLAST of CV884240 vs. ExPASy Swiss-Prot
Match: MYB_HUMAN (Myb proto-oncogene protein OS=Homo sapiens GN=MYB PE=1 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 5.401e-33
Identity = 62/102 (60.78%), Postives = 78/102 (76.47%), Query Frame = 1
Query:  172 IKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRK 477
            IKGPW+ EED+ +  LVQ YGP+ WS+I+K + GR GK CR RW N L+P+V+   +T EED  I +AH R GN+WA IA+LL GRTDNAIKNHWNST++RK
Sbjct:   91 IKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 192          
BLAST of CV884240 vs. ExPASy Swiss-Prot
Match: MYB_CHICK (Myb proto-oncogene protein OS=Gallus gallus GN=MYB PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 5.401e-33
Identity = 62/102 (60.78%), Postives = 78/102 (76.47%), Query Frame = 1
Query:  172 IKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRK 477
            IKGPW+ EED+ +  LVQ YGP+ WS+I+K + GR GK CR RW N L+P+V+   +T EED  I +AH R GN+WA IA+LL GRTDNAIKNHWNST++RK
Sbjct:   91 IKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 192          
BLAST of CV884240 vs. ExPASy Swiss-Prot
Match: MYB_BOVIN (Myb proto-oncogene protein OS=Bos taurus GN=MYB PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 5.401e-33
Identity = 62/102 (60.78%), Postives = 78/102 (76.47%), Query Frame = 1
Query:  172 IKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRK 477
            IKGPW+ EED+ +  LVQ YGP+ WS+I+K + GR GK CR RW N L+P+V+   +T EED  I +AH R GN+WA IA+LL GRTDNAIKNHWNST++RK
Sbjct:   91 IKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 192          
BLAST of CV884240 vs. ExPASy Swiss-Prot
Match: MYBA_MOUSE (Myb-related protein A OS=Mus musculus GN=Mybl1 PE=2 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 7.054e-33
Identity = 62/102 (60.78%), Postives = 77/102 (75.49%), Query Frame = 1
Query:  172 IKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRK 477
            IKGPW+ EED+ +  LVQ YGP+ WSLI+K + GR GK CR RW N L+P+V+   +T EED  I  AH R GN+WA IA+LL GRTDN+IKNHWNST++RK
Sbjct:   86 IKGPWTKEEDQRVIELVQKYGPKRWSLIAKHLKGRIGKQCRERWHNHLNPEVKKSSWTEEEDRIIYEAHKRLGNRWAEIAKLLPGRTDNSIKNHWNSTMRRK 187          
BLAST of CV884240 vs. ExPASy Swiss-Prot
Match: MYBA_HUMAN (Myb-related protein A OS=Homo sapiens GN=MYBL1 PE=1 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 7.054e-33
Identity = 62/102 (60.78%), Postives = 77/102 (75.49%), Query Frame = 1
Query:  172 IKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRK 477
            IKGPW+ EED+ +  LVQ YGP+ WSLI+K + GR GK CR RW N L+P+V+   +T EED  I  AH R GN+WA IA+LL GRTDN+IKNHWNST++RK
Sbjct:   86 IKGPWTKEEDQRVIELVQKYGPKRWSLIAKHLKGRIGKQCRERWHNHLNPEVKKSSWTEEEDRIIYEAHKRLGNRWAEIAKLLPGRTDNSIKNHWNSTMRRK 187          
BLAST of CV884240 vs. ExPASy Swiss-Prot
Match: MYBA_CHICK (Myb-related protein A OS=Gallus gallus GN=MYBL1 PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.680e-32
Identity = 61/102 (59.80%), Postives = 76/102 (74.51%), Query Frame = 1
Query:  172 IKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRK 477
            IKGPW+ EED+ +  LVQ YGP+ WSLI+K + GR GK CR RW N L+P+V+   +T  ED  I  AH R GN+WA IA+LL GRTDN+IKNHWNST++RK
Sbjct:   86 IKGPWTKEEDQRVIELVQKYGPKRWSLIAKHLKGRIGKQCRERWHNHLNPEVKKSSWTEAEDRVIYEAHKRLGNRWAEIAKLLPGRTDNSIKNHWNSTMRRK 187          
BLAST of CV884240 vs. ExPASy Swiss-Prot
Match: MYBA_XENLA (Myb-related protein A OS=Xenopus laevis GN=mybl1 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.971e-32
Identity = 60/102 (58.82%), Postives = 75/102 (73.53%), Query Frame = 1
Query:  172 IKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRK 477
            +KGPW+ EED+ +  LV  YGP+ WS+I+K + GR GK CR RW N L+P V+   +T EED  I  AH R GN+WA IA+LL GRTDN+IKNHWNST+KRK
Sbjct:   85 VKGPWTKEEDQRVIELVHKYGPKKWSIIAKHLKGRIGKQCRERWHNHLNPDVKKSSWTEEEDRIIYSAHKRMGNRWAEIAKLLPGRTDNSIKNHWNSTMKRK 186          
The following BLAST results are available for this feature:
BLAST of CV884240 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
MYB44_ARATH2.253e-5571.43Transcription factor MYB44 OS=Arabidopsis thaliana... [more]
MYB_MOUSE3.166e-3350.00Myb proto-oncogene protein OS=Mus musculus GN=Myb ... [more]
MYB_XENLA5.401e-3360.78Myb protein OS=Xenopus laevis GN=myb PE=2 SV=1[more]
MYB_HUMAN5.401e-3360.78Myb proto-oncogene protein OS=Homo sapiens GN=MYB ... [more]
MYB_CHICK5.401e-3360.78Myb proto-oncogene protein OS=Gallus gallus GN=MYB... [more]
MYB_BOVIN5.401e-3360.78Myb proto-oncogene protein OS=Bos taurus GN=MYB PE... [more]
MYBA_MOUSE7.054e-3360.78Myb-related protein A OS=Mus musculus GN=Mybl1 PE=... [more]
MYBA_HUMAN7.054e-3360.78Myb-related protein A OS=Homo sapiens GN=MYBL1 PE=... [more]
MYBA_CHICK2.680e-3259.80Myb-related protein A OS=Gallus gallus GN=MYBL1 PE... [more]
MYBA_XENLA5.971e-3258.82Myb-related protein A OS=Xenopus laevis GN=mybl1 P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_002B08_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_002_T3_B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884240 ID=CV884240; Name=CV884240; organism=Citrus sinensis; type=EST; length=773bp
GACGCTCAAGCCTCCACCATCACCACCTTCTAAACGAAATCAAAACCTCT
CTGCTATAACAGCACTGAGATAGTTAGATTCTTATCCTTGTTTTATTTTT
TTTTTGAAAAAAAAAAATTAGATTTTCCTTGTTCTTAAACCATGGCTTCG
ACCAAAAAAGATGTGGATCGGATCAAGGGTCCGTGGAGTCCAGAAGAAGA
TGAGGCGTTACAGAGGCTGGTACAAAACTACGGCCCTAGAAACTGGTCTT
TGATCAGTAAGTCGATCCCTGGCCGATCGGGCAAATCATGCCGGTTACGC
TGGTGTAACCAGCTGTCACCTCAGGTAGAACACAGACCGTTCACTCCTGA
AGAGGACGAGACTATACTTCGGGCCCACGCTCGGTTCGGTAACAAATGGG
CCACCATCGCTCGCCTCCTTAGCGGCCGGACCGATAACGCTATCAAAAAC
CACTGGAACTCCACTTTGAAGAGGAAATGCTCTTCCATGAGTGATGAGTC
GCAGGTAGATGCGATTAACCCGCTCCCGTTGAAAAGAGCGAACAGTGTGG
GGCCGAGCAATAATATTTCCGGGTTGTGTTTGAACCCGGGTAGTCCATCT
GGATCCGATTTGAGTGATTCAAGCTTACCCGGTGTGGCTCAGTCTCCAGT
TTGCCACCCCTTGTTTCGAACCGGATCGCTTGTTCCTGTCGAGACCTCAT
CTTCAACAACGGATCCACCAACGTCACTCAGCCTCTCGCTGCCCGGATCC
GAATCTTGTGAGGTCTCAAATCA
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