CV884240

Overview
NameCV884240
Unique NameCV884240
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length773
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884240 vs. ExPASy Swiss-Prot
Match: MYBA_DICDI (Myb-like protein A OS=Dictyostelium discoideum GN=mybA PE=4 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 4.428e-27
Identity = 53/101 (52.48%), Postives = 71/101 (70.30%), Query Frame = 1
Query:  172 IKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKR 474
            +KG W+ +ED+ +  LV+ YGP+ WS I+  + GR GK CR RW N L+P ++   ++ EED+ I   HA  GNKWA IA+ L GRTDNAIKNHWNS++KR
Sbjct:  200 VKGAWTKDEDDKVIELVKTYGPKKWSDIALHLKGRMGKQCRERWHNHLNPNIKKEAWSDEEDQIIRDQHAIHGNKWAEIAKFLPGRTDNAIKNHWNSSMKR 300          
BLAST of CV884240 vs. ExPASy Swiss-Prot
Match: MYB40_ANTMA (Myb-related protein 340 OS=Antirrhinum majus GN=MYB340 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.430e-25
Identity = 60/141 (42.55%), Postives = 84/141 (59.57%), Query Frame = 1
Query:  160 DVDRIKGPWSPEEDEALQRLVQNYGPRNWSLISKSIP-GRSGKSCRLRWCNQLSPQVEHRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCSSMSDESQVDAINPLPLKRANSVGPSNNISGLC 579
            DV+  KGPW+ EED  L   + N+G   W+ I++S    R+GKSCRLRW N L P V     TPEE   I+  HA++GN+W+ IA+ L GRTDN IKN+WN T  +K    ++ S +  INP   + +N    ++ +S  C
Sbjct:   10 DVEVRKGPWTMEEDLILINFISNHGEGVWNTIARSAGLKRTGKSCRLRWLNYLRPDVRRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNYWNRTRIQKHIKQAEASFIGHINP---EHSNEQASTSLLSSSC 147          
BLAST of CV884240 vs. ExPASy Swiss-Prot
Match: LAF1_ARATH (Transcription factor LAF1 OS=Arabidopsis thaliana GN=LAF1 PE=1 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 2.430e-25
Identity = 59/128 (46.09%), Postives = 78/128 (60.94%), Query Frame = 1
Query:  142 MASTKKDVDRIKGPWSPEEDEALQRLVQNYGPRNWSLIS-KSIPGRSGKSCRLRWCNQLSPQVEHRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCSSMSDESQVDAINP 522
            MA TK      KG WSPEEDE L+  + +YG   W+ +  K+   R+GKSCRLRW N L P ++    + EE+ETIL  H+  GNKW+ IA+ L GRTDN IKN+W+S LK+K           +I+P
Sbjct:    1 MAKTKYGERHRKGLWSPEEDEKLRSFILSYGHSCWTTVPIKAGLQRNGKSCRLRWINYLRPGLKRDMISAEEEETILTFHSSLGNKWSQIAKFLPGRTDNEIKNYWHSHLKKKWLKSQSLQDAKSISP 128          
BLAST of CV884240 vs. ExPASy Swiss-Prot
Match: MYB46_ARATH (Transcription factor MYB46 OS=Arabidopsis thaliana GN=MYB46 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.174e-25
Identity = 57/122 (46.72%), Postives = 78/122 (63.93%), Query Frame = 1
Query:  145 ASTKKDVDRIKGPWSPEEDEALQRLVQNYGPRNWSLISKSIP-GRSGKSCRLRWCNQLSPQVEHRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCSSMSDESQV 507
            AST +     KG WSPEED  L + + + G   WS ++K+    R GKSCRLRW N L P ++   F+P+E++ I+R H+  GN+W+ IA  L GRTDN IKN WNST+K++   MSD S +
Sbjct:   10 ASTHQVKKMKKGLWSPEEDSKLMQYMLSNGQGCWSDVAKNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEDLIIRFHSILGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKKMSDTSNL 131          
BLAST of CV884240 vs. ExPASy Swiss-Prot
Match: MYB1_MAIZE (Myb-related protein Zm1 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.021e-23
Identity = 61/140 (43.57%), Postives = 78/140 (55.71%), Query Frame = 1
Query:  175 KGPWSPEEDEALQRLVQNYGPRNWSLISKSIPG-RSGKSCRLRWCNQLSPQVEHRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCSSMSDE----SQVDAINP--LPLKRANSVGPSNNISG 573
            +G W+P+ED  L   +Q +G  NW  + K     R GKSCRLRW N L P ++   FT EE+E I+R H   GNKW+ IA  L GRTDN IKN WN+ LK+K +    +       DA  P   PL  A S   ++N SG
Sbjct:   16 RGSWTPQEDMRLIAYIQKHGHTNWRALPKQAGLLRCGKSCRLRWINYLRPDLKRGNFTDEEEEAIIRLHGLLGNKWSKIAACLPGRTDNEIKNVWNTHLKKKVAQREKKKAGAGSGDAGTPATAPLSSATSSTTTHNSSG 155          
BLAST of CV884240 vs. ExPASy Swiss-Prot
Match: MYB39_ARATH (Transcription factor MYB39 OS=Arabidopsis thaliana GN=MYB39 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.741e-23
Identity = 57/133 (42.86%), Postives = 75/133 (56.39%), Query Frame = 1
Query:  175 KGPWSPEEDEALQRLVQNYGPRNWSLISKSIP-GRSGKSCRLRWCNQLSPQVEHRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCSSMSDESQVDAINPLPLKRANSVGPSNNIS 570
            KGPW PEED+ L   +   G  NW  + K     R GKSCRLRW N L P +    F+  E+ TI+R HA  GNKW+ IA  L GRTDN IKN+WN+ +++K   M     +D +   P  R N + P  ++S
Sbjct:   15 KGPWLPEEDDKLTAYINENGYGNWRSLPKLAGLNRCGKSCRLRWMNYLRPDIRRGKFSDGEESTIVRLHALLGNKWSKIAGHLPGRTDNEIKNYWNTHMRKKLLQMG----IDPVTHEP--RTNDLSPILDVS 141          
BLAST of CV884240 vs. ExPASy Swiss-Prot
Match: RAX1_ARATH (Transcription factor RAX1 OS=Arabidopsis thaliana GN=RAX1 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.970e-23
Identity = 55/116 (47.41%), Postives = 72/116 (62.07%), Query Frame = 1
Query:  175 KGPWSPEEDEALQRLVQNYGPR-NW-SLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCSSMSDESQVDAI 516
            +GPWSPEED  L+  ++ YG   NW S   K+   R GKSCRLRW N L P ++H  F+ EED  I    A  G++W+ IA  L GRTDN IKN+WN+ L++K  S S +S   A+
Sbjct:   14 RGPWSPEEDSKLRDYIEKYGNGGNWISFPLKAGLRRCGKSCRLRWLNYLRPNIKHGDFSEEEDRIIFSLFAAIGSRWSIIAAHLPGRTDNDIKNYWNTKLRKKLLSSSSDSSSSAM 129          
BLAST of CV884240 vs. ExPASy Swiss-Prot
Match: MYBA1_ORYSJ (Myb-related protein MYBAS1 OS=Oryza sativa subsp. japonica GN=MYBAS1 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.970e-23
Identity = 49/102 (48.04%), Postives = 70/102 (68.63%), Query Frame = 1
Query:  175 KGPWSPEEDEALQRLVQNYGPRNWSLISK-SIPGRSGKSCRLRWCNQLSPQVEHRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRK 477
            KGPW+ +ED  L   V+ +G R W  ++K S   R+GKSCRLRW N L P ++H   +P+E+  I+  HAR+GN+W+ IAR L GRTDN IKN+W + +++K
Sbjct:   10 KGPWTEQEDLQLVCTVRLFGDRRWDFVAKVSGLNRTGKSCRLRWVNYLHPGLKHGRMSPKEEHLIIELHARWGNRWSRIARRLPGRTDNEIKNYWRTHMRKK 111          
BLAST of CV884240 vs. ExPASy Swiss-Prot
Match: MYB48_ARATH (Transcription factor MYB48 OS=Arabidopsis thaliana GN=MYB48 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.970e-23
Identity = 49/102 (48.04%), Postives = 68/102 (66.67%), Query Frame = 1
Query:  175 KGPWSPEEDEALQRLVQNYGPRNWSLISK-SIPGRSGKSCRLRWCNQLSPQVEHRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRK 477
            KGPW+ +ED  L   V  +G R W  I+K S   R+GKSCRLRW N L P ++    TP+E+  +L  HA++GN+W+ IAR L GRTDN IKN+W + +++K
Sbjct:    9 KGPWTEQEDILLVNFVHLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYLHPGLKRGKMTPQEERLVLELHAKWGNRWSKIARKLPGRTDNEIKNYWRTHMRKK 110          
BLAST of CV884240 vs. ExPASy Swiss-Prot
Match: MYB59_ARATH (Transcription factor MYB59 OS=Arabidopsis thaliana GN=MYB59 PE=2 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 3.879e-23
Identity = 48/102 (47.06%), Postives = 68/102 (66.67%), Query Frame = 1
Query:  175 KGPWSPEEDEALQRLVQNYGPRNWSLISK-SIPGRSGKSCRLRWCNQLSPQVEHRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRK 477
            KGPW+ +ED  L   V  +G R W  ++K S   R+GKSCRLRW N L P ++    TP+E+  +L  HA++GN+W+ IAR L GRTDN IKN+W + +++K
Sbjct:   10 KGPWTEQEDILLVNFVHLFGDRRWDFVAKVSGLNRTGKSCRLRWVNYLHPGLKRGKMTPQEERLVLELHAKWGNRWSKIARKLPGRTDNEIKNYWRTHMRKK 111          
The following BLAST results are available for this feature:
BLAST of CV884240 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
MYBA_DICDI4.428e-2752.48Myb-like protein A OS=Dictyostelium discoideum GN=... [more]
MYB40_ANTMA2.430e-2542.55Myb-related protein 340 OS=Antirrhinum majus GN=MY... [more]
LAF1_ARATH2.430e-2546.09Transcription factor LAF1 OS=Arabidopsis thaliana ... [more]
MYB46_ARATH3.174e-2546.72Transcription factor MYB46 OS=Arabidopsis thaliana... [more]
MYB1_MAIZE1.021e-2343.57Myb-related protein Zm1 OS=Zea mays PE=2 SV=1[more]
MYB39_ARATH1.741e-2342.86Transcription factor MYB39 OS=Arabidopsis thaliana... [more]
RAX1_ARATH2.970e-2347.41Transcription factor RAX1 OS=Arabidopsis thaliana ... [more]
MYBA1_ORYSJ2.970e-2348.04Myb-related protein MYBAS1 OS=Oryza sativa subsp. ... [more]
MYB48_ARATH2.970e-2348.04Transcription factor MYB48 OS=Arabidopsis thaliana... [more]
MYB59_ARATH3.879e-2347.06Transcription factor MYB59 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_002B08_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_002_T3_B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884240 ID=CV884240; Name=CV884240; organism=Citrus sinensis; type=EST; length=773bp
GACGCTCAAGCCTCCACCATCACCACCTTCTAAACGAAATCAAAACCTCT
CTGCTATAACAGCACTGAGATAGTTAGATTCTTATCCTTGTTTTATTTTT
TTTTTGAAAAAAAAAAATTAGATTTTCCTTGTTCTTAAACCATGGCTTCG
ACCAAAAAAGATGTGGATCGGATCAAGGGTCCGTGGAGTCCAGAAGAAGA
TGAGGCGTTACAGAGGCTGGTACAAAACTACGGCCCTAGAAACTGGTCTT
TGATCAGTAAGTCGATCCCTGGCCGATCGGGCAAATCATGCCGGTTACGC
TGGTGTAACCAGCTGTCACCTCAGGTAGAACACAGACCGTTCACTCCTGA
AGAGGACGAGACTATACTTCGGGCCCACGCTCGGTTCGGTAACAAATGGG
CCACCATCGCTCGCCTCCTTAGCGGCCGGACCGATAACGCTATCAAAAAC
CACTGGAACTCCACTTTGAAGAGGAAATGCTCTTCCATGAGTGATGAGTC
GCAGGTAGATGCGATTAACCCGCTCCCGTTGAAAAGAGCGAACAGTGTGG
GGCCGAGCAATAATATTTCCGGGTTGTGTTTGAACCCGGGTAGTCCATCT
GGATCCGATTTGAGTGATTCAAGCTTACCCGGTGTGGCTCAGTCTCCAGT
TTGCCACCCCTTGTTTCGAACCGGATCGCTTGTTCCTGTCGAGACCTCAT
CTTCAACAACGGATCCACCAACGTCACTCAGCCTCTCGCTGCCCGGATCC
GAATCTTGTGAGGTCTCAAATCA
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