CV884240

Overview
NameCV884240
Unique NameCV884240
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length773
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884240 vs. ExPASy Swiss-Prot
Match: MYBA2_ORYSJ (Myb-related protein MYBAS2 OS=Oryza sativa subsp. japonica GN=MYBAS2 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.617e-23
Identity = 54/119 (45.38%), Postives = 75/119 (63.03%), Query Frame = 1
Query:  175 KGPWSPEEDEALQRLVQNYGPRNWSLISK-SIPGRSGKSCRLRWCNQLSPQVEHRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKC----SSMSDESQVDAI 516
            KGPW+ +ED  L   V+ +G R W  I+K S   R+GKSCRLRW N L P ++    +P E+  IL  HAR+GN+W+ IAR L GRTDN IKN+W + +++K     S+MS  S   ++
Sbjct:   10 KGPWTEQEDLQLVCTVRLFGERRWDFIAKVSGLNRTGKSCRLRWVNYLHPGLKRGRMSPHEERLILELHARWGNRWSRIARRLPGRTDNEIKNYWRTHMRKKAQERKSNMSPSSSSSSL 128          
BLAST of CV884240 vs. ExPASy Swiss-Prot
Match: MYB4_ORYSJ (Myb-related protein Myb4 OS=Oryza sativa subsp. japonica GN=MYB4 PE=2 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 6.617e-23
Identity = 51/114 (44.74%), Postives = 70/114 (61.40%), Query Frame = 1
Query:  175 KGPWSPEEDEALQRLVQNYGPRNWSLISKSIPG-RSGKSCRLRWCNQLSPQVEHRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCSSMSDESQVDA 513
            KGPW+PEED+ L   +Q +G  NW  + K     R GKSCRLRW N L P ++   F+ EE++TI+  H   GN+W+ IA  L GRTDN IKN W++ LK++  + +    V A
Sbjct:   14 KGPWTPEEDKVLVAHIQRHGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFSKEEEDTIIHLHELLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRLDAPAQGGHVAA 127          
BLAST of CV884240 vs. ExPASy Swiss-Prot
Match: GAM1_ORYSJ (Transcription factor GAMYB OS=Oryza sativa subsp. japonica GN=GAM1 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 8.642e-23
Identity = 49/101 (48.51%), Postives = 66/101 (65.35%), Query Frame = 1
Query:  175 KGPWSPEEDEALQRLVQNYGPRNWSLISKSIP-GRSGKSCRLRWCNQLSPQVEHRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKR 474
            KGPW+  ED  L   V+ +G  NW+ + K+    R GKSCRLRW N L P ++   FT EE+  I++ H++ GNKWA +A  L GRTDN IKN+WN+ +KR
Sbjct:   42 KGPWTSAEDAILVDYVKKHGEGNWNAVQKNTGLFRCGKSCRLRWANHLRPNLKKGAFTAEEERLIIQLHSKMGNKWARMAAHLPGRTDNEIKNYWNTRIKR 142          
BLAST of CV884240 vs. ExPASy Swiss-Prot
Match: GAM1_ORYSI (Transcription factor GAMYB OS=Oryza sativa subsp. indica GN=GAM1 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 8.642e-23
Identity = 49/101 (48.51%), Postives = 66/101 (65.35%), Query Frame = 1
Query:  175 KGPWSPEEDEALQRLVQNYGPRNWSLISKSIP-GRSGKSCRLRWCNQLSPQVEHRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKR 474
            KGPW+  ED  L   V+ +G  NW+ + K+    R GKSCRLRW N L P ++   FT EE+  I++ H++ GNKWA +A  L GRTDN IKN+WN+ +KR
Sbjct:   42 KGPWTSAEDAILVDYVKKHGEGNWNAVQKNTGLFRCGKSCRLRWANHLRPNLKKGAFTAEEERLIIQLHSKMGNKWARMAAHLPGRTDNEIKNYWNTRIKR 142          
BLAST of CV884240 vs. ExPASy Swiss-Prot
Match: MYB6_ARATH (Transcription repressor MYB6 OS=Arabidopsis thaliana GN=MYB6 PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.474e-22
Identity = 52/111 (46.85%), Postives = 70/111 (63.06%), Query Frame = 1
Query:  175 KGPWSPEEDEALQRLVQNYGPRNWSLISKSIPG-RSGKSCRLRWCNQLSPQVEHRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCSSMSDESQ 504
            KG W+ EED+ L   ++N+G   W  + KS    R GKSCRLRW N L P ++   FT +ED+ I++ H+  GNKW+ IA  L GRTDN IKN+WN+ +KRK  S   + Q
Sbjct:   14 KGAWTKEEDQRLVDYIRNHGEGCWRSLPKSAGLLRCGKSCRLRWINYLRPDLKRGNFTDDEDQIIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKLLSHGIDPQ 124          
BLAST of CV884240 vs. ExPASy Swiss-Prot
Match: MYB05_ANTMA (Myb-related protein 305 OS=Antirrhinum majus GN=MYB305 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.474e-22
Identity = 53/122 (43.44%), Postives = 74/122 (60.66%), Query Frame = 1
Query:  157 KDVDRIKGPWSPEEDEALQRLVQNYGPRNWSLISKSIP-GRSGKSCRLRWCNQLSPQVEHRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCSSMSDESQVDAIN 519
            +DV+  KGPW+ EED  L   + N+G   W+ +++S    R+GKSCRLRW N L P V     TPEE   I+  HA++GN+W+ IA+ L GRTDN IKN+W + + +K     D+S     N
Sbjct:    9 QDVEVRKGPWTMEEDLILINYIANHGEGVWNSLARSAGLKRTGKSCRLRWLNYLRPDVRRGNITPEEQLLIMELHAKWGNRWSKIAKTLPGRTDNEIKNYWRTRI-QKHMEQGDQSSSTTFN 129          
BLAST of CV884240 vs. ExPASy Swiss-Prot
Match: MYB30_ANTMA (Myb-related protein 330 OS=Antirrhinum majus GN=MYB330 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.515e-22
Identity = 52/111 (46.85%), Postives = 69/111 (62.16%), Query Frame = 1
Query:  175 KGPWSPEEDEALQRLVQNYGPRNWSLISKSIPG-RSGKSCRLRWCNQLSPQVEHRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCSSMSDESQ 504
            KG W+ EED+ L   ++ +G   W  + K+    R GKSCRLRW N L P ++   FT EEDE I++ H+  GNKW+ IA  L GRTDN IKN+WN+ +KRK  S   + Q
Sbjct:   14 KGAWTKEEDQRLINYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDEIIIKLHSLLGNKWSLIAGALPGRTDNEIKNYWNTHIKRKLVSRGIDPQ 124          
BLAST of CV884240 vs. ExPASy Swiss-Prot
Match: MYB1_HORVU (Myb-related protein Hv1 OS=Hordeum vulgare GN=MYB1 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.515e-22
Identity = 55/133 (41.35%), Postives = 80/133 (60.15%), Query Frame = 1
Query:  175 KGPWSPEEDEALQRLVQNYGPRNWSLISKSIPG-RSGKSCRLRWCNQLSPQVEHRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCSSMSDESQVDAINPLPLKRANSVGPSNNIS 570
            KG W+ EED+ L   ++ +G   W  + K+    R GKSCRLRW N L P ++   F+ EEDE I++ H+  GNKW+ IA  L GRTDN IKN+WN+ ++RK +S         I+P+  +  NS   ++NI+
Sbjct:   14 KGAWTKEEDDRLTAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFSHEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLTSR-------GIDPVTHRAINSDHAASNIT 139          
BLAST of CV884240 vs. ExPASy Swiss-Prot
Match: MYB06_ANTMA (Myb-related protein 306 OS=Antirrhinum majus GN=MYB306 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.515e-22
Identity = 51/110 (46.36%), Postives = 67/110 (60.91%), Query Frame = 1
Query:  175 KGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSG-----KSCRLRWCNQLSPQVEHRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCSSM 489
            KGPW+PEED  L   +Q +GP NW    ++IP  +G     KSCRLRW N L P ++   FT  E++ I+   A  GN+WA IA  L  RTDN IKN+WN+ LK+K   +
Sbjct:   14 KGPWTPEEDIILVSYIQEHGPGNW----RAIPSNTGLLRCSKSCRLRWTNYLRPGIKRGDFTEHEEKMIIHLQALLGNRWAAIASYLPHRTDNDIKNYWNTHLKKKLEKL 119          
BLAST of CV884240 vs. ExPASy Swiss-Prot
Match: WER_ARATH (Transcription factor WER OS=Arabidopsis thaliana GN=WER PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.284e-22
Identity = 54/141 (38.30%), Postives = 79/141 (56.03%), Query Frame = 1
Query:  175 KGPWSPEEDEALQRLVQNYGPRNWSLISKSIP-GRSGKSCRLRWCNQLSPQVEHRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKC---SSMSDESQVDAINPLPLKRANSVGPSNNISGLCLN 585
            KG W+ EED+ L   V+ +G  +W+ I+K     R GKSCRLRW N LSP V+   FT +E++ I+R H   GN+W+ IA+ + GRTDN +KN+WN+ L +K       + +S  D +  + L           IS +  N
Sbjct:   18 KGLWTVEEDKILMDYVKAHGKGHWNRIAKKTGLKRCGKSCRLRWMNYLSPNVKRGNFTEQEEDLIIRLHKLLGNRWSLIAKRVPGRTDNQVKNYWNTHLSKKLGIKDQKTKQSNGDIVYQINLPNPTETSEETKISNIVDN 158          
The following BLAST results are available for this feature:
BLAST of CV884240 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
MYBA2_ORYSJ6.617e-2345.38Myb-related protein MYBAS2 OS=Oryza sativa subsp. ... [more]
MYB4_ORYSJ6.617e-2344.74Myb-related protein Myb4 OS=Oryza sativa subsp. ja... [more]
GAM1_ORYSJ8.642e-2348.51Transcription factor GAMYB OS=Oryza sativa subsp. ... [more]
GAM1_ORYSI8.642e-2348.51Transcription factor GAMYB OS=Oryza sativa subsp. ... [more]
MYB6_ARATH1.474e-2246.85Transcription repressor MYB6 OS=Arabidopsis thalia... [more]
MYB05_ANTMA1.474e-2243.44Myb-related protein 305 OS=Antirrhinum majus GN=MY... [more]
MYB30_ANTMA2.515e-2246.85Myb-related protein 330 OS=Antirrhinum majus GN=MY... [more]
MYB1_HORVU2.515e-2241.35Myb-related protein Hv1 OS=Hordeum vulgare GN=MYB1... [more]
MYB06_ANTMA2.515e-2246.36Myb-related protein 306 OS=Antirrhinum majus GN=MY... [more]
WER_ARATH3.284e-2238.30Transcription factor WER OS=Arabidopsis thaliana G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_002B08_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_002_T3_B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884240 ID=CV884240; Name=CV884240; organism=Citrus sinensis; type=EST; length=773bp
GACGCTCAAGCCTCCACCATCACCACCTTCTAAACGAAATCAAAACCTCT
CTGCTATAACAGCACTGAGATAGTTAGATTCTTATCCTTGTTTTATTTTT
TTTTTGAAAAAAAAAAATTAGATTTTCCTTGTTCTTAAACCATGGCTTCG
ACCAAAAAAGATGTGGATCGGATCAAGGGTCCGTGGAGTCCAGAAGAAGA
TGAGGCGTTACAGAGGCTGGTACAAAACTACGGCCCTAGAAACTGGTCTT
TGATCAGTAAGTCGATCCCTGGCCGATCGGGCAAATCATGCCGGTTACGC
TGGTGTAACCAGCTGTCACCTCAGGTAGAACACAGACCGTTCACTCCTGA
AGAGGACGAGACTATACTTCGGGCCCACGCTCGGTTCGGTAACAAATGGG
CCACCATCGCTCGCCTCCTTAGCGGCCGGACCGATAACGCTATCAAAAAC
CACTGGAACTCCACTTTGAAGAGGAAATGCTCTTCCATGAGTGATGAGTC
GCAGGTAGATGCGATTAACCCGCTCCCGTTGAAAAGAGCGAACAGTGTGG
GGCCGAGCAATAATATTTCCGGGTTGTGTTTGAACCCGGGTAGTCCATCT
GGATCCGATTTGAGTGATTCAAGCTTACCCGGTGTGGCTCAGTCTCCAGT
TTGCCACCCCTTGTTTCGAACCGGATCGCTTGTTCCTGTCGAGACCTCAT
CTTCAACAACGGATCCACCAACGTCACTCAGCCTCTCGCTGCCCGGATCC
GAATCTTGTGAGGTCTCAAATCA
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