CV884240

Overview
NameCV884240
Unique NameCV884240
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length773
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884240 vs. ExPASy Swiss-Prot
Match: MYB86_ARATH (Transcription factor MYB86 OS=Arabidopsis thaliana GN=MYB86 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.284e-22
Identity = 52/103 (50.49%), Postives = 65/103 (63.11%), Query Frame = 1
Query:  175 KGPWSPEEDEALQRLVQNYGPRNWSLISKSIPG--RSGKSCRLRWCNQLSPQVEHRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRK 477
            KG WSPEEDE L   +  +G   WS + K + G  R GKSCRLRW N L P ++   F+ +E+  I+  HA  GN+W+ IA  L GRTDN IKN WNS LK+K
Sbjct:   14 KGLWSPEEDEKLLNYITRHGHGCWSSVPK-LAGLQRCGKSCRLRWINYLRPDLKRGAFSQDEESLIIELHAALGNRWSQIATRLPGRTDNEIKNFWNSCLKKK 115          
BLAST of CV884240 vs. ExPASy Swiss-Prot
Match: MYB82_ARATH (Transcription factor MYB82 OS=Arabidopsis thaliana GN=MYB82 PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.284e-22
Identity = 50/119 (42.02%), Postives = 71/119 (59.66%), Query Frame = 1
Query:  175 KGPWSPEEDEALQRLVQNYGPRNWSLISK-SIPGRSGKSCRLRWCNQLSPQVEHRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCSSMSDESQVDAINPLP 528
            +G W PEED  L+  V+ +G  NW+ IS+ S   R GKSCRLRW N L P ++    +P+E + I+R H   GN+W+ IA  L GRTDN +KN+WN+ L +K +S    +    +   P
Sbjct:   14 RGLWKPEEDMILKSYVETHGEGNWADISRRSGLKRGGKSCRLRWKNYLRPNIKRGSMSPQEQDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNKKPNSRRQNAPESIVGATP 132          
BLAST of CV884240 vs. ExPASy Swiss-Prot
Match: MYB23_ARATH (Transcription factor MYB23 OS=Arabidopsis thaliana GN=MYB23 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.289e-22
Identity = 50/113 (44.25%), Postives = 71/113 (62.83%), Query Frame = 1
Query:  142 MASTKKDVDRIKGPWSPEEDEALQRLVQNYGPRNWSLISKSIP-GRSGKSCRLRWCNQLSPQVEHRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRK 477
            M    K+ +  KG W+ EED+ L   V+ +G  +W+ I+K     R GKSCRLRW N LSP V    FT +E++ I+R H   GN+W+ IA+ + GRTDN +KN+WN+ L +K
Sbjct:    3 MTRDGKEHEYKKGLWTVEEDKILMDYVRTHGQGHWNRIAKKTGLKRCGKSCRLRWMNYLSPNVNRGNFTDQEEDLIIRLHKLLGNRWSLIAKRVPGRTDNQVKNYWNTHLSKK 115          
BLAST of CV884240 vs. ExPASy Swiss-Prot
Match: MYB3_ARATH (Transcription factor MYB3 OS=Arabidopsis thaliana GN=MYB3 PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.602e-22
Identity = 50/105 (47.62%), Postives = 67/105 (63.81%), Query Frame = 1
Query:  175 KGPWSPEEDEALQRLVQNYGPRNWSLISKSIP-GRSGKSCRLRWCNQLSPQVEHRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCSS 486
            KG W+ EED+ L   ++ +G   W  + ++    R GKSCRLRW N L P ++   FT EEDE I++ H+  GNKW+ IA  L GRTDN IKN+WN+ +KRK  S
Sbjct:   14 KGAWTKEEDQLLVDYIRKHGEGCWRSLPRAAGLQRCGKSCRLRWMNYLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKLLS 118          
BLAST of CV884240 vs. ExPASy Swiss-Prot
Match: RAX2_ARATH (Transcription factor RAX2 OS=Arabidopsis thaliana GN=RAX2 PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 7.316e-22
Identity = 52/103 (50.49%), Postives = 65/103 (63.11%), Query Frame = 1
Query:  175 KGPWSPEEDEALQRLVQNYGPR-NW-SLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRK 477
            +GPWSPEED  L+  ++  G   NW +L  K+   R GKSCRLRW N L P + H  FT EED  I    A  G++W+ IA  L GRTDN IKN+WN+ LK+K
Sbjct:   14 RGPWSPEEDAKLKDYIEKQGTGGNWIALPHKAGLRRCGKSCRLRWLNYLRPNIRHGDFTEEEDNIIYSLFASIGSRWSVIAAHLQGRTDNDIKNYWNTKLKKK 116          
BLAST of CV884240 vs. ExPASy Swiss-Prot
Match: MYB4_ARATH (Transcription repressor MYB4 OS=Arabidopsis thaliana GN=MYB4 PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 7.316e-22
Identity = 50/102 (49.02%), Postives = 66/102 (64.71%), Query Frame = 1
Query:  175 KGPWSPEEDEALQRLVQNYGPRNWSLISKSIPG-RSGKSCRLRWCNQLSPQVEHRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRK 477
            KG W+ EEDE L   ++ +G   W  + K+    R GKSCRLRW N L P ++   FT EEDE I++ H+  GNKW+ IA  L GRTDN IKN+WN+ ++RK
Sbjct:   14 KGAWTKEEDERLVAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRK 115          
BLAST of CV884240 vs. ExPASy Swiss-Prot
Match: GL1_ARATH (Trichome differentiation protein GL1 OS=Arabidopsis thaliana GN=GL1 PE=1 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 7.316e-22
Identity = 49/109 (44.95%), Postives = 70/109 (64.22%), Query Frame = 1
Query:  154 KKDVDRIKGPWSPEEDEALQRLVQNYGPRNWS-LISKSIPGRSGKSCRLRWCNQLSPQVEHRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRK 477
            K++ +  KG W+ EED  L   V N+G   W+ ++ K+   R GKSCRLRW N LSP V    FT +E++ I+R H   GN+W+ IA+ + GRTDN +KN+WN+ L +K
Sbjct:    9 KENQEYKKGLWTVEEDNILMDYVLNHGTGQWNRIVRKTGLKRCGKSCRLRWMNYLSPNVNKGNFTEQEEDLIIRLHKLLGNRWSLIAKRVPGRTDNQVKNYWNTHLSKK 117          
BLAST of CV884240 vs. ExPASy Swiss-Prot
Match: GL1_ARALY (Trichome differentiation protein GL1 OS=Arabidopsis lyrata GN=GL1 PE=3 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 7.316e-22
Identity = 49/109 (44.95%), Postives = 70/109 (64.22%), Query Frame = 1
Query:  154 KKDVDRIKGPWSPEEDEALQRLVQNYGPRNWS-LISKSIPGRSGKSCRLRWCNQLSPQVEHRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRK 477
            K++ +  KG W+ EED  L   V N+G   W+ ++ K+   R GKSCRLRW N LSP V    FT +E++ I+R H   GN+W+ IA+ + GRTDN +KN+WN+ L +K
Sbjct:    9 KENQEYKKGLWTVEEDNILMDYVLNHGTGQWNRIVRKTGLKRCGKSCRLRWMNYLSPNVNKGNFTEQEEDLIIRLHKLLGNRWSLIAKRVPGRTDNQVKNYWNTHLSKK 117          
BLAST of CV884240 vs. ExPASy Swiss-Prot
Match: RAX3_ARATH (Transcription factor RAX3 OS=Arabidopsis thaliana GN=RAX3 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 9.555e-22
Identity = 50/103 (48.54%), Postives = 66/103 (64.08%), Query Frame = 1
Query:  175 KGPWSPEEDEALQRLVQNYGPR-NWSLISKSIP-GRSGKSCRLRWCNQLSPQVEHRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRK 477
            KGPWSPEED  L+  ++N G   NW  + + I   R GKSCRLRW N L P ++H  F+ EE+  I   +   G++W+ IA  L GRTDN IKN+WN+ LK+K
Sbjct:   14 KGPWSPEEDAKLKSYIENSGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEENIICSLYLTIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKK 116          
BLAST of CV884240 vs. ExPASy Swiss-Prot
Match: MYB5_ARATH (Transcription repressor MYB5 OS=Arabidopsis thaliana GN=MYB5 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.248e-21
Identity = 55/134 (41.04%), Postives = 74/134 (55.22%), Query Frame = 1
Query:  175 KGPWSPEEDEALQRLVQNYGPRNW-SLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCSSMSDESQVDAINPLPLKRANSVGPSNNISG 573
            +GPW+ EEDE L   ++  G   W SL  ++   R GKSCRLRW N L P V+    T +E++ ILR H   GN+W+ IA  + GRTDN IKN+WN+ L++K         +D     PL   N   P   +SG
Sbjct:   25 RGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQG----IDPQTHKPLDANNIHKPEEEVSG 154          
The following BLAST results are available for this feature:
BLAST of CV884240 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
MYB86_ARATH3.284e-2250.49Transcription factor MYB86 OS=Arabidopsis thaliana... [more]
MYB82_ARATH3.284e-2242.02Transcription factor MYB82 OS=Arabidopsis thaliana... [more]
MYB23_ARATH4.289e-2244.25Transcription factor MYB23 OS=Arabidopsis thaliana... [more]
MYB3_ARATH5.602e-2247.62Transcription factor MYB3 OS=Arabidopsis thaliana ... [more]
RAX2_ARATH7.316e-2250.49Transcription factor RAX2 OS=Arabidopsis thaliana ... [more]
MYB4_ARATH7.316e-2249.02Transcription repressor MYB4 OS=Arabidopsis thalia... [more]
GL1_ARATH7.316e-2244.95Trichome differentiation protein GL1 OS=Arabidopsi... [more]
GL1_ARALY7.316e-2244.95Trichome differentiation protein GL1 OS=Arabidopsi... [more]
RAX3_ARATH9.555e-2248.54Transcription factor RAX3 OS=Arabidopsis thaliana ... [more]
MYB5_ARATH1.248e-2141.04Transcription repressor MYB5 OS=Arabidopsis thalia... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_002B08_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_002_T3_B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884240 ID=CV884240; Name=CV884240; organism=Citrus sinensis; type=EST; length=773bp
GACGCTCAAGCCTCCACCATCACCACCTTCTAAACGAAATCAAAACCTCT
CTGCTATAACAGCACTGAGATAGTTAGATTCTTATCCTTGTTTTATTTTT
TTTTTGAAAAAAAAAAATTAGATTTTCCTTGTTCTTAAACCATGGCTTCG
ACCAAAAAAGATGTGGATCGGATCAAGGGTCCGTGGAGTCCAGAAGAAGA
TGAGGCGTTACAGAGGCTGGTACAAAACTACGGCCCTAGAAACTGGTCTT
TGATCAGTAAGTCGATCCCTGGCCGATCGGGCAAATCATGCCGGTTACGC
TGGTGTAACCAGCTGTCACCTCAGGTAGAACACAGACCGTTCACTCCTGA
AGAGGACGAGACTATACTTCGGGCCCACGCTCGGTTCGGTAACAAATGGG
CCACCATCGCTCGCCTCCTTAGCGGCCGGACCGATAACGCTATCAAAAAC
CACTGGAACTCCACTTTGAAGAGGAAATGCTCTTCCATGAGTGATGAGTC
GCAGGTAGATGCGATTAACCCGCTCCCGTTGAAAAGAGCGAACAGTGTGG
GGCCGAGCAATAATATTTCCGGGTTGTGTTTGAACCCGGGTAGTCCATCT
GGATCCGATTTGAGTGATTCAAGCTTACCCGGTGTGGCTCAGTCTCCAGT
TTGCCACCCCTTGTTTCGAACCGGATCGCTTGTTCCTGTCGAGACCTCAT
CTTCAACAACGGATCCACCAACGTCACTCAGCCTCTCGCTGCCCGGATCC
GAATCTTGTGAGGTCTCAAATCA
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