CV884240

Overview
NameCV884240
Unique NameCV884240
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length773
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884240 vs. ExPASy Swiss-Prot
Match: MYB08_ANTMA (Myb-related protein 308 OS=Antirrhinum majus GN=MYB308 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.248e-21
Identity = 50/105 (47.62%), Postives = 67/105 (63.81%), Query Frame = 1
Query:  175 KGPWSPEEDEALQRLVQNYGPRNWSLISKSIPG-RSGKSCRLRWCNQLSPQVEHRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCSS 486
            KG W+ EED+ L   ++ +G   W  + K+    R GKSCRLRW N L P ++   FT EEDE I++ H+  GNKW+ IA  L GRTDN IKN+WN+ ++RK  S
Sbjct:   14 KGAWTKEEDDRLVAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLS 118          
BLAST of CV884240 vs. ExPASy Swiss-Prot
Match: MYB21_ARATH (Transcription factor MYB21 OS=Arabidopsis thaliana GN=MYB21 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.630e-21
Identity = 54/134 (40.30%), Postives = 79/134 (58.96%), Query Frame = 1
Query:  175 KGPWSPEEDEALQRLVQNYGPRNWSLISKSIP-GRSGKSCRLRWCNQLSPQVEHRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKR--KCSSMSDESQVDAINPLPLKRANSVGPSNNI 567
            KGPW+ EED  L   + N+G   W+ ++KS    R+GKSCRLRW N L P V     TPEE   I+  HA++GN+W+ IA+ L GRTDN IKN W + +++  K S ++  S V + +   +    +   S+N+
Sbjct:   22 KGPWTMEEDLILINYIANHGDGVWNSLAKSAGLKRTGKSCRLRWLNYLRPDVRRGNITPEEQLIIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKYIKQSDVTTTSSVGSHHSSEINDQAASTSSHNV 155          
BLAST of CV884240 vs. ExPASy Swiss-Prot
Match: MYB32_ARATH (Transcription factor MYB32 OS=Arabidopsis thaliana GN=MYB32 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.129e-21
Identity = 49/102 (48.04%), Postives = 66/102 (64.71%), Query Frame = 1
Query:  175 KGPWSPEEDEALQRLVQNYGPRNWSLISKSIP-GRSGKSCRLRWCNQLSPQVEHRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRK 477
            KG W+ EED+ L   ++ +G   W  + +S    R GKSCRLRW N L P ++   FT EED+ I++ H+  GNKW+ IA  L GRTDN IKN+WN+ +KRK
Sbjct:   14 KGAWTKEEDDKLISYIKAHGEGCWRSLPRSAGLQRCGKSCRLRWINYLRPDLKRGNFTLEEDDLIIKLHSLLGNKWSLIATRLPGRTDNEIKNYWNTHVKRK 115          
BLAST of CV884240 vs. ExPASy Swiss-Prot
Match: MYB15_ANTMA (Myb-related protein 315 OS=Antirrhinum majus GN=MYB315 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.780e-21
Identity = 51/126 (40.48%), Postives = 71/126 (56.35%), Query Frame = 1
Query:  175 KGPWSPEEDEALQRLVQNYGPRNWSLISKSIP-GRSGKSCRLRWCNQLSPQVEHRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCSSMSDESQVDAINPLPLKRANSV 549
            +GPW+ EED+ L   V   G + W +I K     R GKSCRLRW N L P ++  P T  E+  I+  HA  GN+W+ IA  + GRTDN IKN+WN+ +K+K   +     +D  N  P +   +V
Sbjct:   14 RGPWTEEEDQKLTSYVLKNGIQGWRVIPKLAGLSRCGKSCRLRWMNYLRPDLKKGPLTEMEENQIIELHAHLGNRWSKIALHIPGRTDNEIKNYWNTHIKKKLKLLG----IDPNNHQPFEHKGNV 135          
BLAST of CV884240 vs. ExPASy Swiss-Prot
Match: MYB12_ARATH (Transcription factor MYB12 OS=Arabidopsis thaliana GN=MYB12 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.631e-21
Identity = 50/129 (38.76%), Postives = 76/129 (58.91%), Query Frame = 1
Query:  175 KGPWSPEEDEALQRLVQNYGPRNWSLISKSIP-GRSGKSCRLRWCNQLSPQVEHRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCSSMSDESQVDA-INPLPLKRANSVGP 555
            +G W+ EED+ L   +Q+ G  +W  + K+    R GKSCRLRW N L   ++    TPEE+E +++ H+  GN+W+ IA  L GRTDN IKN+WNS L RK  +   +  +   ++ + +  A+S  P
Sbjct:   14 RGRWTAEEDQILSNYIQSNGEGSWRSLPKNAGLKRCGKSCRLRWINYLRSDLKRGNITPEEEELVVKLHSTLGNRWSLIAGHLPGRTDNEIKNYWNSHLSRKLHNFIRKPSISQDVSAVIMTNASSAPP 142          
BLAST of CV884240 vs. ExPASy Swiss-Prot
Match: ODO1_PETHY (Protein ODORANT1 OS=Petunia hybrida GN=ODO1 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 6.194e-21
Identity = 51/123 (41.46%), Postives = 72/123 (58.54%), Query Frame = 1
Query:  175 KGPWSPEEDEALQRLVQNYGPRNWSLISKSIPG--RSGKSCRLRWCNQLSPQVEHRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCSSMSDESQVDAINPLPLKR 537
            KGPW+ EED+ L   +   G   W  + K + G  R GKSCRLRW N L P ++    +  E++ ++  H+R GN+W+ IA  L GRTDN IKNHWN+ +K+K   M     +D +   PLK+
Sbjct:   14 KGPWTAEEDKKLISFILTNGQCCWRAVPK-LAGLKRCGKSCRLRWTNYLRPDLKRGLLSDAEEKLVIDLHSRLGNRWSKIAARLPGRTDNEIKNHWNTHIKKKLLKMG----IDPVTHEPLKK 131          
BLAST of CV884240 vs. ExPASy Swiss-Prot
Match: MYB1_NEUCR (Myb-like DNA-binding protein myb-1 OS=Neurospora crassa GN=rca-1 PE=3 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 8.089e-21
Identity = 48/112 (42.86%), Postives = 68/112 (60.71%), Query Frame = 1
Query:  166 DRIKGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCSSMSDES 501
            D+ +GPWS  ED+ L +LV++ GP NW  +++ +  R+ K CR RW   L P + H P T EE   I+R     G +WA IAR L GR+DNA+KN+WN    RK + +  +S
Sbjct:    6 DQRRGPWSAGEDQRLIKLVKDLGPGNWVNVARILGTRTPKQCRERWHQNLKPGLNHGPMTQEEAAIIVREVDLKGPRWADIARKLQGRSDNAVKNYWNGLNNRKKNQLRRQS 117          
BLAST of CV884240 vs. ExPASy Swiss-Prot
Match: MYB38_MAIZE (Myb-related protein Zm38 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.056e-20
Identity = 47/102 (46.08%), Postives = 66/102 (64.71%), Query Frame = 1
Query:  175 KGPWSPEEDEALQRLVQNYGPRNWSLISKSIPG-RSGKSCRLRWCNQLSPQVEHRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRK 477
            +G W+ EEDE L   ++ +G   W  + K+    R GKSCRLRW N L P ++   FT +ED+ I++ H+  GNKW+ IA  L GRTDN IKN+WN+ ++RK
Sbjct:   14 RGAWTKEEDERLVAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTADEDDLIVKLHSLLGNKWSLIAARLPGRTDNEIKNYWNTHVRRK 115          
BLAST of CV884240 vs. ExPASy Swiss-Prot
Match: MYB2_PHYPA (Myb-related protein Pp2 OS=Physcomitrella patens GN=PP2 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.802e-20
Identity = 54/122 (44.26%), Postives = 71/122 (58.20%), Query Frame = 1
Query:  175 KGPWSPEEDEALQRLVQNYGPRNWSLISKSIPG--RSGKSCRLRWCNQLSPQVEHRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCSSMSDESQVDAINPLPLK 534
            +GPW+ EED+ L   + N G   W  I K + G  R GKSCRLRW N L P ++   F+  E+  IL  HA  GN+W+ IA  L GRTDN IKN+WN+ LK++  S      +D    LPL+
Sbjct:   14 RGPWTSEEDQKLVSHITNNGLSCWRAIPK-LAGLLRCGKSCRLRWTNYLRPDLKRGIFSEAEENLILDLHATLGNRWSRIAAQLPGRTDNEIKNYWNTRLKKRLRSQG----LDPNTHLPLE 130          
BLAST of CV884240 vs. ExPASy Swiss-Prot
Match: MYB3_HORVU (Myb-related protein Hv33 OS=Hordeum vulgare GN=MYB2 PE=2 SV=3)

HSP 1 Score: 99.3673 bits (246), Expect = 2.354e-20
Identity = 48/102 (47.06%), Postives = 64/102 (62.75%), Query Frame = 1
Query:  175 KGPWSPEEDEALQRLVQNYGPRNWSLISK-SIPGRSGKSCRLRWCNQLSPQVEHRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRK 477
            KG WSPEEDE L   +  +G   WS + + +   R GKSCRLRW N L P ++   F+ +E++ I+  H   GN+W+ IA  L GRTDN IKN WNS +K+K
Sbjct:   16 KGLWSPEEDEKLYNHIIRHGVGCWSSVPRLAALNRCGKSCRLRWINYLRPDLKRGCFSQQEEDHIVALHQILGNRWSQIASHLPGRTDNEIKNFWNSCIKKK 117          
The following BLAST results are available for this feature:
BLAST of CV884240 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
MYB08_ANTMA1.248e-2147.62Myb-related protein 308 OS=Antirrhinum majus GN=MY... [more]
MYB21_ARATH1.630e-2140.30Transcription factor MYB21 OS=Arabidopsis thaliana... [more]
MYB32_ARATH2.129e-2148.04Transcription factor MYB32 OS=Arabidopsis thaliana... [more]
MYB15_ANTMA2.780e-2140.48Myb-related protein 315 OS=Antirrhinum majus GN=MY... [more]
MYB12_ARATH3.631e-2138.76Transcription factor MYB12 OS=Arabidopsis thaliana... [more]
ODO1_PETHY6.194e-2141.46Protein ODORANT1 OS=Petunia hybrida GN=ODO1 PE=2 S... [more]
MYB1_NEUCR8.089e-2142.86Myb-like DNA-binding protein myb-1 OS=Neurospora c... [more]
MYB38_MAIZE1.056e-2046.08Myb-related protein Zm38 OS=Zea mays PE=2 SV=1[more]
MYB2_PHYPA1.802e-2044.26Myb-related protein Pp2 OS=Physcomitrella patens G... [more]
MYB3_HORVU2.354e-2047.06Myb-related protein Hv33 OS=Hordeum vulgare GN=MYB... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_002B08_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_002_T3_B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884240 ID=CV884240; Name=CV884240; organism=Citrus sinensis; type=EST; length=773bp
GACGCTCAAGCCTCCACCATCACCACCTTCTAAACGAAATCAAAACCTCT
CTGCTATAACAGCACTGAGATAGTTAGATTCTTATCCTTGTTTTATTTTT
TTTTTGAAAAAAAAAAATTAGATTTTCCTTGTTCTTAAACCATGGCTTCG
ACCAAAAAAGATGTGGATCGGATCAAGGGTCCGTGGAGTCCAGAAGAAGA
TGAGGCGTTACAGAGGCTGGTACAAAACTACGGCCCTAGAAACTGGTCTT
TGATCAGTAAGTCGATCCCTGGCCGATCGGGCAAATCATGCCGGTTACGC
TGGTGTAACCAGCTGTCACCTCAGGTAGAACACAGACCGTTCACTCCTGA
AGAGGACGAGACTATACTTCGGGCCCACGCTCGGTTCGGTAACAAATGGG
CCACCATCGCTCGCCTCCTTAGCGGCCGGACCGATAACGCTATCAAAAAC
CACTGGAACTCCACTTTGAAGAGGAAATGCTCTTCCATGAGTGATGAGTC
GCAGGTAGATGCGATTAACCCGCTCCCGTTGAAAAGAGCGAACAGTGTGG
GGCCGAGCAATAATATTTCCGGGTTGTGTTTGAACCCGGGTAGTCCATCT
GGATCCGATTTGAGTGATTCAAGCTTACCCGGTGTGGCTCAGTCTCCAGT
TTGCCACCCCTTGTTTCGAACCGGATCGCTTGTTCCTGTCGAGACCTCAT
CTTCAACAACGGATCCACCAACGTCACTCAGCCTCTCGCTGCCCGGATCC
GAATCTTGTGAGGTCTCAAATCA
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