CV884240

Overview
NameCV884240
Unique NameCV884240
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length773
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884240 vs. ExPASy Swiss-Prot
Match: MY104_ARATH (Transcription factor MYB104 OS=Arabidopsis thaliana GN=MYB104 PE=2 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 4.015e-20
Identity = 48/105 (45.71%), Postives = 61/105 (58.10%), Query Frame = 1
Query:  175 KGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSG-----KSCRLRWCNQLSPQVEHRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKR 474
            K  W PEED  L+  V  YG R W+     +P R+G      SCR RW N L P ++  PFT EE++ +L+ HA  GNKW+ +AR   GRTDN IKN WN+   R
Sbjct:   18 KSKWKPEEDRILKDYVIQYGDRTWT----HVPKRTGLPHNPASCRFRWMNHLKPSLKKGPFTDEEEKRVLQLHAVLGNKWSQMAREFPGRTDNEIKNFWNARRMR 118          
BLAST of CV884240 vs. ExPASy Swiss-Prot
Match: MYBC_MAIZE (Anthocyanin regulatory C1 protein OS=Zea mays GN=C1 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.944e-20
Identity = 46/105 (43.81%), Postives = 65/105 (61.90%), Query Frame = 1
Query:  175 KGPWSPEEDEALQRLVQNYGPRNWSLI-SKSIPGRSGKSCRLRWCNQLSPQVEHRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCSS 486
            +G W+ +ED+AL   V+ +G   W  +  K+   R GKSCRLRW N L P +     + +E++ I+R H   GN+W+ IA  L GRTDN IKN+WNSTL R+  +
Sbjct:   14 RGAWTSKEDDALAAYVKAHGEGKWREVPQKAGLRRCGKSCRLRWLNYLRPNIRRGNISYDEEDLIIRLHRLLGNRWSLIAGRLPGRTDNEIKNYWNSTLGRRAGA 118          
BLAST of CV884240 vs. ExPASy Swiss-Prot
Match: TT2_ARATH (Transcription factor TT2 OS=Arabidopsis thaliana GN=TT2 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.526e-19
Identity = 44/102 (43.14%), Postives = 62/102 (60.78%), Query Frame = 1
Query:  175 KGPWSPEEDEALQRLVQNYGPRNWSLISKSIP-GRSGKSCRLRWCNQLSPQVEHRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRK 477
            +G W+  ED+ L+  +  +G   WS +       R GKSCRLRW N L P ++    + +E+E I+R H   GN+W+ IA  L GRTDN IKNHWNS L+++
Sbjct:   16 RGAWTDHEDKILRDYITTHGEGKWSTLPNQAGLKRCGKSCRLRWKNYLRPGIKRGNISSDEEELIIRLHNLLGNRWSLIAGRLPGRTDNEIKNHWNSNLRKR 117          
BLAST of CV884240 vs. ExPASy Swiss-Prot
Match: MYBP_MAIZE (Myb-related protein P OS=Zea mays GN=P PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.399e-19
Identity = 45/102 (44.12%), Postives = 63/102 (61.76%), Query Frame = 1
Query:  175 KGPWSPEEDEALQRLVQNYGPRNWSLISKSIPG-RSGKSCRLRWCNQLSPQVEHRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRK 477
            +G W+ EED+ L   +  +G  +W  + K+    R GKSCRLRW N L   V+    + EE++ I++ HA  GN+W+ IA  L GRTDN IKN+WNS L R+
Sbjct:   14 RGRWTAEEDQLLANYIAEHGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADVKRGNISKEEEDIIIKLHATLGNRWSLIASHLPGRTDNEIKNYWNSHLSRQ 115          
BLAST of CV884240 vs. ExPASy Swiss-Prot
Match: MY114_ARATH (Transcription factor MYB114 OS=Arabidopsis thaliana GN=MYB114 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.758e-18
Identity = 44/106 (41.51%), Postives = 62/106 (58.49%), Query Frame = 1
Query:  175 KGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSG-----KSCRLRWCNQLSPQVEHRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRK 477
            KG W+ EED  L++ +  YG   W      +P R+G     KSCRLRW N L P ++   F+ +E + +LR H   GN+W+ IA  L GRT N +KN+WN+ L +K
Sbjct:   10 KGAWTAEEDSLLRQCIGKYGEGKWH----QVPLRAGLNRCRKSCRLRWLNYLKPSIKRGKFSSDEVDLLLRLHKLLGNRWSLIAGRLPGRTANDVKNYWNTHLSKK 111          
BLAST of CV884240 vs. ExPASy Swiss-Prot
Match: MYB75_ARATH (Transcription factor MYB75 OS=Arabidopsis thaliana GN=MYB75 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.908e-18
Identity = 48/136 (35.29%), Postives = 69/136 (50.74%), Query Frame = 1
Query:  175 KGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSG-----KSCRLRWCNQLSPQVEHRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRK----CSSMSDESQVDAINPLPLKRANSVGP 555
            KG W+ EED  L++ +  YG   W      +P R+G     KSCRLRW N L P ++    + +E + +LR H   GN+W+ IA  L GRT N +KN+WN+ L +K    C     +  +  I   P  + N   P
Sbjct:   10 KGAWTTEEDSLLRQCINKYGEGKWH----QVPVRAGLNRCRKSCRLRWLNYLKPSIKRGKLSSDEVDLLLRLHRLLGNRWSLIAGRLPGRTANDVKNYWNTHLSKKHEPCCKIKMKKRDITPIPTTPALKNNVYKP 141          
BLAST of CV884240 vs. ExPASy Swiss-Prot
Match: MYB90_ARATH (Transcription factor MYB90 OS=Arabidopsis thaliana GN=MYB90 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.093e-17
Identity = 48/132 (36.36%), Postives = 70/132 (53.03%), Query Frame = 1
Query:  175 KGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSG-----KSCRLRWCNQLSPQVEHRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCSSMSDESQVDAINPLPLKRANSVGP 555
            KG W+ EED  L+  +  YG   W      +P R+G     KSCRLRW N L P ++    + +E + +LR H   GN+W+ IA  L GRT N +KN+WN+ L +K  S   +S+        +K+ N + P
Sbjct:   10 KGAWTAEEDSLLRLCIDKYGEGKWH----QVPLRAGLNRCRKSCRLRWLNYLKPSIKRGRLSNDEVDLLLRLHKLLGNRWSLIAGRLPGRTANDVKNYWNTHLSKKHESSCCKSK--------MKKKNIISP 129          
BLAST of CV884240 vs. ExPASy Swiss-Prot
Match: MY113_ARATH (Transcription factor MYB113 OS=Arabidopsis thaliana GN=MYB113 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.154e-17
Identity = 41/102 (40.20%), Postives = 59/102 (57.84%), Query Frame = 1
Query:  175 KGPWSPEEDEALQRLVQNYGPRNWSLIS-KSIPGRSGKSCRLRWCNQLSPQVEHRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRK 477
            KG W+ EED  L++ +  YG   W  +  ++   R  KSCRLRW N L P ++      +E + +LR H   GN+W+ IA  L GRT N +KN+WN+ L +K
Sbjct:   10 KGTWTTEEDILLRQCIDKYGEGKWHRVPLRTGLNRCRKSCRLRWLNYLKPSIKRGKLCSDEVDLVLRLHKLLGNRWSLIAGRLPGRTANDVKNYWNTHLSKK 111          
BLAST of CV884240 vs. ExPASy Swiss-Prot
Match: MYBL_DICDI (Myb-like protein L OS=Dictyostelium discoideum GN=mybL PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.693e-16
Identity = 41/100 (41.00%), Postives = 55/100 (55.00%), Query Frame = 1
Query:  175 KGPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFTPEEDETILRAHARFG-NKWATIARLLSGRTDNAIKNHWNSTLK 471
            KG WSPEED+ L   V  YG  NW LI   + GR+   CR R+CN L PQ+    +TP+ED+ +     + G  KW+ +A+L+  RTDN     W    K
Sbjct:  652 KGRWSPEEDQCLINAVNAYGKGNWILIKNHVKGRTDVQCRERYCNVLDPQLTKIRWTPQEDKRLFDITNKVGIGKWSDVAKLMENRTDNQCWRRWKQLNK 751          
BLAST of CV884240 vs. ExPASy Swiss-Prot
Match: RS2_MAIZE (Protein rough sheath 2 OS=Zea mays GN=RS2 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.520e-14
Identity = 39/107 (36.45%), Postives = 55/107 (51.40%), Query Frame = 1
Query:  184 WSPEEDEALQRLVQNYGPRNWSLISKSIP---GRSGKSCRLRWCNQLSPQVEHRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCSSMSD 495
            W PEED  L+  V+ YGPR W L+S+ +     R  KSC  RW N L P ++    T EE   ++R  A+ GNKW  IA  + GRT   +   W    +++   + D
Sbjct:    7 WRPEEDAVLRAYVRQYGPREWHLVSQRMNVALDRDAKSCLERWKNYLRPGIKKGSLTEEEQRLVIRLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQRELRD 113          
The following BLAST results are available for this feature:
BLAST of CV884240 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
MY104_ARATH4.015e-2045.71Transcription factor MYB104 OS=Arabidopsis thalian... [more]
MYBC_MAIZE8.944e-2043.81Anthocyanin regulatory C1 protein OS=Zea mays GN=C... [more]
TT2_ARATH1.526e-1943.14Transcription factor TT2 OS=Arabidopsis thaliana G... [more]
MYBP_MAIZE3.399e-1944.12Myb-related protein P OS=Zea mays GN=P PE=2 SV=1[more]
MY114_ARATH3.758e-1841.51Transcription factor MYB114 OS=Arabidopsis thalian... [more]
MYB75_ARATH4.908e-1835.29Transcription factor MYB75 OS=Arabidopsis thaliana... [more]
MYB90_ARATH1.093e-1736.36Transcription factor MYB90 OS=Arabidopsis thaliana... [more]
MY113_ARATH4.154e-1740.20Transcription factor MYB113 OS=Arabidopsis thalian... [more]
MYBL_DICDI2.693e-1641.00Myb-like protein L OS=Dictyostelium discoideum GN=... [more]
RS2_MAIZE2.520e-1436.45Protein rough sheath 2 OS=Zea mays GN=RS2 PE=1 SV=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_002B08_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_002_T3_B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884240 ID=CV884240; Name=CV884240; organism=Citrus sinensis; type=EST; length=773bp
GACGCTCAAGCCTCCACCATCACCACCTTCTAAACGAAATCAAAACCTCT
CTGCTATAACAGCACTGAGATAGTTAGATTCTTATCCTTGTTTTATTTTT
TTTTTGAAAAAAAAAAATTAGATTTTCCTTGTTCTTAAACCATGGCTTCG
ACCAAAAAAGATGTGGATCGGATCAAGGGTCCGTGGAGTCCAGAAGAAGA
TGAGGCGTTACAGAGGCTGGTACAAAACTACGGCCCTAGAAACTGGTCTT
TGATCAGTAAGTCGATCCCTGGCCGATCGGGCAAATCATGCCGGTTACGC
TGGTGTAACCAGCTGTCACCTCAGGTAGAACACAGACCGTTCACTCCTGA
AGAGGACGAGACTATACTTCGGGCCCACGCTCGGTTCGGTAACAAATGGG
CCACCATCGCTCGCCTCCTTAGCGGCCGGACCGATAACGCTATCAAAAAC
CACTGGAACTCCACTTTGAAGAGGAAATGCTCTTCCATGAGTGATGAGTC
GCAGGTAGATGCGATTAACCCGCTCCCGTTGAAAAGAGCGAACAGTGTGG
GGCCGAGCAATAATATTTCCGGGTTGTGTTTGAACCCGGGTAGTCCATCT
GGATCCGATTTGAGTGATTCAAGCTTACCCGGTGTGGCTCAGTCTCCAGT
TTGCCACCCCTTGTTTCGAACCGGATCGCTTGTTCCTGTCGAGACCTCAT
CTTCAACAACGGATCCACCAACGTCACTCAGCCTCTCGCTGCCCGGATCC
GAATCTTGTGAGGTCTCAAATCA
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