CV884240

Overview
NameCV884240
Unique NameCV884240
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length773
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884240 vs. ExPASy Swiss-Prot
Match: RS2_ORYSJ (Protein rough sheath 2 homolog OS=Oryza sativa subsp. japonica GN=RS2 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.299e-14
Identity = 39/110 (35.45%), Postives = 56/110 (50.91%), Query Frame = 1
Query:  184 WSPEEDEALQRLVQNYGPRNWSLISKSIPG---RSGKSCRLRWCNQLSPQVEHRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCSSMSDESQ 504
            W PEED  L   V+ YGPR WSL+S+ +     R  KSC  RW N L P ++    T +E   ++R  A+ GNKW  IA  + GRT   +   W    +++   + D  +
Sbjct:   12 WRPEEDAILLAYVRQYGPREWSLVSQRMNRPLHRDAKSCLERWKNYLRPGIKKGSLTDDEQRLVIRLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQRELRDRDR 121          
BLAST of CV884240 vs. ExPASy Swiss-Prot
Match: AS1_ARATH (Transcription factor AS1 OS=Arabidopsis thaliana GN=AS1 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.108e-13
Identity = 36/94 (38.30%), Postives = 49/94 (52.13%), Query Frame = 1
Query:  184 WSPEEDEALQRLVQNYGPRNWSLISKSIP---GRSGKSCRLRWCNQLSPQVEHRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHW 456
            WS EED  L+  V+ +GPR W L+S+ +     R  KSC  RW N L P ++    T EE   ++R   + GNKW  IA  + GRT   +   W
Sbjct:    7 WSGEEDALLRAYVRQFGPREWHLVSERMNKPLNRDAKSCLERWKNYLKPGIKKGSLTEEEQRLVIRLQEKHGNKWKKIAAEVPGRTAKRLGKWW 100          
BLAST of CV884240 vs. ExPASy Swiss-Prot
Match: CEF1_CANAL (Pre-mRNA-splicing factor CEF1 OS=Candida albicans GN=CEF1 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.964e-12
Identity = 32/82 (39.02%), Postives = 46/82 (56.10%), Query Frame = 1
Query:  178 GPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFTPEEDETILRAHARFGNKWATIARLLS 423
            G W+  EDE L+  +Q YG   W  IS  +P +S K  + RW   LSP +    +T EEDE +L  H  F N+W +I+ +L+
Sbjct:   10 GVWTNVEDEILKAAIQKYGIYQWERISSLLPKKSAKQVKARWVEYLSPLLNKTDWTKEEDEKLLNLHKIFPNQWRSISNILN 91          
BLAST of CV884240 vs. ExPASy Swiss-Prot
Match: CEF1_CANGA (Pre-mRNA-splicing factor CEF1 OS=Candida glabrata GN=CEF1 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.529e-11
Identity = 38/130 (29.23%), Postives = 62/130 (47.69%), Query Frame = 1
Query:  178 GPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCSSMSDESQVDAINPLPLK---RANSVGPS 558
            G W+  ED+ L+  VQ YG   WS I+  +  ++ + C +RW   L+P +    FT EED+ +L       N+W TI+ L+ GR        +N  L+ + S    E+   A + +      + N + PS
Sbjct:   10 GLWTNIEDQILKAAVQKYGVHQWSKIASLLQKKNARQCEIRWNEYLNPTLNFEEFTKEEDKKLLELVRTLPNQWRTISELM-GRPSQQCIERYNILLETELSKTDGEATTSANSAISTSFGFKPNEIHPS 138          
BLAST of CV884240 vs. ExPASy Swiss-Prot
Match: CDC5L_ARATH (Cell division cycle 5-like protein OS=Arabidopsis thaliana GN=CDC5 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.997e-11
Identity = 39/119 (32.77%), Postives = 57/119 (47.90%), Query Frame = 1
Query:  178 GPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCSSMSDESQVDAINPLPLK 534
            G W   EDE L+  V  YG   W+ IS  +  +S K C+ RW   L P ++   +T EEDE +L        +W TIA ++ GRT +     +   L   C+   DE+   A +P  L+
Sbjct:    8 GVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLLPTQWRTIAPIV-GRTPSQCLERYEKLLDAACT--KDENYDAADDPRKLR 123          
The following BLAST results are available for this feature:
BLAST of CV884240 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
RS2_ORYSJ4.299e-1435.45Protein rough sheath 2 homolog OS=Oryza sativa sub... [more]
AS1_ARATH8.108e-1338.30Transcription factor AS1 OS=Arabidopsis thaliana G... [more]
CEF1_CANAL8.964e-1239.02Pre-mRNA-splicing factor CEF1 OS=Candida albicans ... [more]
CEF1_CANGA1.529e-1129.23Pre-mRNA-splicing factor CEF1 OS=Candida glabrata ... [more]
CDC5L_ARATH1.997e-1132.77Cell division cycle 5-like protein OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_002B08_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_002_T3_B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884240 ID=CV884240; Name=CV884240; organism=Citrus sinensis; type=EST; length=773bp
GACGCTCAAGCCTCCACCATCACCACCTTCTAAACGAAATCAAAACCTCT
CTGCTATAACAGCACTGAGATAGTTAGATTCTTATCCTTGTTTTATTTTT
TTTTTGAAAAAAAAAAATTAGATTTTCCTTGTTCTTAAACCATGGCTTCG
ACCAAAAAAGATGTGGATCGGATCAAGGGTCCGTGGAGTCCAGAAGAAGA
TGAGGCGTTACAGAGGCTGGTACAAAACTACGGCCCTAGAAACTGGTCTT
TGATCAGTAAGTCGATCCCTGGCCGATCGGGCAAATCATGCCGGTTACGC
TGGTGTAACCAGCTGTCACCTCAGGTAGAACACAGACCGTTCACTCCTGA
AGAGGACGAGACTATACTTCGGGCCCACGCTCGGTTCGGTAACAAATGGG
CCACCATCGCTCGCCTCCTTAGCGGCCGGACCGATAACGCTATCAAAAAC
CACTGGAACTCCACTTTGAAGAGGAAATGCTCTTCCATGAGTGATGAGTC
GCAGGTAGATGCGATTAACCCGCTCCCGTTGAAAAGAGCGAACAGTGTGG
GGCCGAGCAATAATATTTCCGGGTTGTGTTTGAACCCGGGTAGTCCATCT
GGATCCGATTTGAGTGATTCAAGCTTACCCGGTGTGGCTCAGTCTCCAGT
TTGCCACCCCTTGTTTCGAACCGGATCGCTTGTTCCTGTCGAGACCTCAT
CTTCAACAACGGATCCACCAACGTCACTCAGCCTCTCGCTGCCCGGATCC
GAATCTTGTGAGGTCTCAAATCA
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