CV884240
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CV884240 vs. ExPASy Swiss-Prot
Match: RS2_ORYSJ (Protein rough sheath 2 homolog OS=Oryza sativa subsp. japonica GN=RS2 PE=2 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 4.299e-14 Identity = 39/110 (35.45%), Postives = 56/110 (50.91%), Query Frame = 1 Query: 184 WSPEEDEALQRLVQNYGPRNWSLISKSIPG---RSGKSCRLRWCNQLSPQVEHRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCSSMSDESQ 504 W PEED L V+ YGPR WSL+S+ + R KSC RW N L P ++ T +E ++R A+ GNKW IA + GRT + W +++ + D + Sbjct: 12 WRPEEDAILLAYVRQYGPREWSLVSQRMNRPLHRDAKSCLERWKNYLRPGIKKGSLTDDEQRLVIRLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQRELRDRDR 121
BLAST of CV884240 vs. ExPASy Swiss-Prot
Match: AS1_ARATH (Transcription factor AS1 OS=Arabidopsis thaliana GN=AS1 PE=1 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 8.108e-13 Identity = 36/94 (38.30%), Postives = 49/94 (52.13%), Query Frame = 1 Query: 184 WSPEEDEALQRLVQNYGPRNWSLISKSIP---GRSGKSCRLRWCNQLSPQVEHRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHW 456 WS EED L+ V+ +GPR W L+S+ + R KSC RW N L P ++ T EE ++R + GNKW IA + GRT + W Sbjct: 7 WSGEEDALLRAYVRQFGPREWHLVSERMNKPLNRDAKSCLERWKNYLKPGIKKGSLTEEEQRLVIRLQEKHGNKWKKIAAEVPGRTAKRLGKWW 100
BLAST of CV884240 vs. ExPASy Swiss-Prot
Match: CEF1_CANAL (Pre-mRNA-splicing factor CEF1 OS=Candida albicans GN=CEF1 PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 8.964e-12 Identity = 32/82 (39.02%), Postives = 46/82 (56.10%), Query Frame = 1 Query: 178 GPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFTPEEDETILRAHARFGNKWATIARLLS 423 G W+ EDE L+ +Q YG W IS +P +S K + RW LSP + +T EEDE +L H F N+W +I+ +L+ Sbjct: 10 GVWTNVEDEILKAAIQKYGIYQWERISSLLPKKSAKQVKARWVEYLSPLLNKTDWTKEEDEKLLNLHKIFPNQWRSISNILN 91
BLAST of CV884240 vs. ExPASy Swiss-Prot
Match: CEF1_CANGA (Pre-mRNA-splicing factor CEF1 OS=Candida glabrata GN=CEF1 PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.529e-11 Identity = 38/130 (29.23%), Postives = 62/130 (47.69%), Query Frame = 1 Query: 178 GPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCSSMSDESQVDAINPLPLK---RANSVGPS 558 G W+ ED+ L+ VQ YG WS I+ + ++ + C +RW L+P + FT EED+ +L N+W TI+ L+ GR +N L+ + S E+ A + + + N + PS Sbjct: 10 GLWTNIEDQILKAAVQKYGVHQWSKIASLLQKKNARQCEIRWNEYLNPTLNFEEFTKEEDKKLLELVRTLPNQWRTISELM-GRPSQQCIERYNILLETELSKTDGEATTSANSAISTSFGFKPNEIHPS 138
BLAST of CV884240 vs. ExPASy Swiss-Prot
Match: CDC5L_ARATH (Cell division cycle 5-like protein OS=Arabidopsis thaliana GN=CDC5 PE=1 SV=2) HSP 1 Score: 69.707 bits (169), Expect = 1.997e-11 Identity = 39/119 (32.77%), Postives = 57/119 (47.90%), Query Frame = 1 Query: 178 GPWSPEEDEALQRLVQNYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFTPEEDETILRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCSSMSDESQVDAINPLPLK 534 G W EDE L+ V YG W+ IS + +S K C+ RW L P ++ +T EEDE +L +W TIA ++ GRT + + L C+ DE+ A +P L+ Sbjct: 8 GVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLLPTQWRTIAPIV-GRTPSQCLERYEKLLDAACT--KDENYDAADDPRKLR 123 The following BLAST results are available for this feature:
BLAST of CV884240 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 75
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Sequences
The
following sequences are available for this feature:
EST sequence >CV884240 ID=CV884240; Name=CV884240; organism=Citrus sinensis; type=EST; length=773bpback to top |