CX300926

Overview
NameCX300926
Unique NameCX300926
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length394
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300926 vs. ExPASy Swiss-Prot
Match: FTSH_BACSU (Cell division protease ftsH homolog OS=Bacillus subtilis GN=ftsH PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.555e-21
Identity = 50/129 (38.76%), Postives = 74/129 (57.36%), Query Frame = 2
Query:    2 LFFDELDSIXXXXXXXXXXXXXXXXXVMNQLLTEMDGVGAKKNVFVIGATNRPDIIDPALMRPGRLDQLIYIPMPDYESRLSILKAVLRKTPVSKDVDLSYLAAQTEKFTGADLTEICQRAAKLAIRED 388
            +F DE+D++                  +NQLL EMDG  A + + +I ATNR DI+DPAL+RPGR D+ I +  PD   R ++LK   R  P+ + V+L  +A +T  F+GADL  +   AA +A R++
Sbjct:  257 IFIDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFSANEGIIIIAATNRADILDPALLRPGRFDRQITVDRPDVIGREAVLKVHARNKPLDETVNLKSIAMRTPGFSGADLENLLNEAALVAARQN 385          
BLAST of CX300926 vs. ExPASy Swiss-Prot
Match: PSMR_METMJ (Proteasome-activating nucleotidase OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=pan PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.643e-21
Identity = 53/127 (41.73%), Postives = 75/127 (59.06%), Query Frame = 2
Query:    2 LFFDELDSIXXXXXXXXXXXXXXXXXVMNQLLTEMDGVGAKKNVFVIGATNRPDIIDPALMRPGRLDQLIYIPMPDYESRLSILKAVLRKTPVSKDVDLSYLAAQTEKFTGADLTEICQRAAKLAIR 382
            +F DE+D+I                  + QLL EMDG   + +V ++ ATNR DI+D AL+RPGR D++I IP+PD++ RL+ILK   +   + +DV+LS ++  TE   GADL  IC  A   AIR
Sbjct:  250 IFIDEIDAIGAHRNDSTTSGDREVQRTLMQLLAEMDGFDNRGDVKIVAATNRIDILDRALLRPGRFDRMIEIPLPDHQGRLAILKIHTQYMNIGEDVNLSEVSRLTEGKNGADLRAICMEAGMFAIR 376          
BLAST of CX300926 vs. ExPASy Swiss-Prot
Match: PSMR_AERPE (Proteasome-activating nucleotidase OS=Aeropyrum pernix GN=pan PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.643e-21
Identity = 56/127 (44.09%), Postives = 71/127 (55.91%), Query Frame = 2
Query:    2 LFFDELDSIXXXXXXXXXXXXXXXXXVMNQLLTEMDGVGAKKNVFVIGATNRPDIIDPALMRPGRLDQLIYIPMPDYESRLSILKAVLRKTPVSKDVDLSYLAAQTEKFTGADLTEICQRAAKLAIR 382
            LF DE+D+I                  M QLL E+DG     NV VI ATNR D+IDPA++RPGR D++I +P+P    RL IL    RK  ++ DVDL  +A  TE F+GADL  +   A   AIR
Sbjct:  236 LFIDEIDAIASKRVDIGTSGDREVQRTMLQLLAELDGFDPLDNVKVIAATNRLDLIDPAVLRPGRFDRIIEVPLPSLRGRLEILGIHTRKAKMAPDVDLEAIAKLTEGFSGADLKAVVVEAGYNAIR 362          
BLAST of CX300926 vs. ExPASy Swiss-Prot
Match: PSMR_SULTO (Proteasome-activating nucleotidase OS=Sulfolobus tokodaii GN=pan PE=3 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 6.063e-21
Identity = 50/127 (39.37%), Postives = 73/127 (57.48%), Query Frame = 2
Query:    2 LFFDELDSIXXXXXXXXXXXXXXXXXVMNQLLTEMDGVGAKKNVFVIGATNRPDIIDPALMRPGRLDQLIYIPMPDYESRLSILKAVLRKTPVSKDVDLSYLAAQTEKFTGADLTEICQRAAKLAIR 382
            +F DE+D+I                  + QLL E+DG     NV +I ATNR DI+DPAL+RPGR D+LI +P+P++E R  I +  L+K     ++    LA+ TE F+GA++  +C  A  +AIR
Sbjct:  231 VFIDEIDAIGAKRVDMGTSGEREIQRTLMQLLAEIDGFKPLDNVKIIAATNRLDILDPALLRPGRFDRLIEVPLPNFEGRKEIFRIYLQKMKTDGNIRYDILASMTEGFSGAEIKNVCTEAGYIAIR 357          
BLAST of CX300926 vs. ExPASy Swiss-Prot
Match: FTSH_CYACA (Cell division protease ftsH homolog OS=Cyanidium caldarium GN=ftsH PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.063e-21
Identity = 51/127 (40.16%), Postives = 72/127 (56.69%), Query Frame = 2
Query:    2 LFFDELDSIXXXXXXXXXXXXXXXXXVMNQLLTEMDGVGAKKNVFVIGATNRPDIIDPALMRPGRLDQLIYIPMPDYESRLSILKAVLRKTPVSKDVDLSYLAAQTEKFTGADLTEICQRAAKLAIR 382
            +F DE+D++                  +NQLLTEMDG      V V+ ATNR D++D AL+RPGR D+ I + +P+   RL+ILK   +K  + KDV L  +A +T  F+GADL  +   AA L +R
Sbjct:  267 VFIDEIDAVGRQRGVGIGGGNDEREQTLNQLLTEMDGFSGDTGVIVVAATNRIDVLDSALLRPGRFDRQIMVSLPNINGRLAILKVHSKKKKIHKDVLLEVIARRTPGFSGADLANLLNEAAILTVR 393          
BLAST of CX300926 vs. ExPASy Swiss-Prot
Match: AFG32_MOUSE (AFG3-like protein 2 OS=Mus musculus GN=Afg3l2 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.063e-21
Identity = 54/131 (41.22%), Postives = 72/131 (54.96%), Query Frame = 2
Query:    2 LFFDELDSIXXXXXXXXXXXXXXXXXVMNQLLTEMDGVGAKKNVFVIGATNRPDIIDPALMRPGRLDQLIYIPMPDYESRLSILKAVLR----KTPVSKDVDLSYLAAQTEKFTGADLTEICQRAAKLAIR 382
            LF DE+D++                  +NQLL EMDG     NV ++  TNRPDI+DPAL+RPGR D+ I+I  PD + R SI K  LR     + + KD     LA+ T  F+GAD+  +C  AA +A R
Sbjct:  403 LFIDEIDAVGRKRGRGNFGGQSEQENTLNQLLVEMDGFNTTTNVVILAGTNRPDILDPALLRPGRFDRQIFIGPPDIKGRASIFKVHLRPLKLDSALEKDKLARKLASLTPGFSGADVANVCNEAALIAAR 533          
BLAST of CX300926 vs. ExPASy Swiss-Prot
Match: AFG32_HUMAN (AFG3-like protein 2 OS=Homo sapiens GN=AFG3L2 PE=1 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 6.063e-21
Identity = 54/131 (41.22%), Postives = 72/131 (54.96%), Query Frame = 2
Query:    2 LFFDELDSIXXXXXXXXXXXXXXXXXVMNQLLTEMDGVGAKKNVFVIGATNRPDIIDPALMRPGRLDQLIYIPMPDYESRLSILKAVLR----KTPVSKDVDLSYLAAQTEKFTGADLTEICQRAAKLAIR 382
            LF DE+D++                  +NQLL EMDG     NV ++  TNRPDI+DPAL+RPGR D+ I+I  PD + R SI K  LR     + + KD     LA+ T  F+GAD+  +C  AA +A R
Sbjct:  404 LFIDEIDAVGRKRGRGNFGGQSEQENTLNQLLVEMDGFNTTTNVVILAGTNRPDILDPALLRPGRFDRQIFIGPPDIKGRASIFKVHLRPLKLDSTLEKDKLARKLASLTPGFSGADVANVCNEAALIAAR 534          
BLAST of CX300926 vs. ExPASy Swiss-Prot
Match: PRS6B_MOUSE (26S protease regulatory subunit 6B OS=Mus musculus GN=Psmc4 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 7.919e-21
Identity = 51/128 (39.84%), Postives = 72/128 (56.25%), Query Frame = 2
Query:    2 LFFDELDSIXXXXXXXXXXXXXXXXXVMNQLLTEMDGVGAKKNVFVIGATNRPDIIDPALMRPGRLDQLIYIPMPDYESRLSILKAVLRKTPVSKDVDLSYLAAQTEKFTGADLTEICQRAAKLAIRE 385
            +F DE+D+I                 ++ +LL +MDG     NV VI ATNR D +DPAL+RPGRLD+ I  P+PD   +  I   +  K  +S++VDL    A+ +K +GAD+  ICQ    LA+RE
Sbjct:  262 IFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQNVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQARGMLAVRE 389          
BLAST of CX300926 vs. ExPASy Swiss-Prot
Match: PRS6B_CAEEL (Probable 26S protease regulatory subunit 6B OS=Caenorhabditis elegans GN=rpt-3 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 7.919e-21
Identity = 51/129 (39.53%), Postives = 72/129 (55.81%), Query Frame = 2
Query:    2 LFFDELDSIXXXXXXXXXXXXXXXXXVMNQLLTEMDGVGAKKNVFVIGATNRPDIIDPALMRPGRLDQLIYIPMPDYESRLSILKAVLRKTPVSKDVDLSYLAAQTEKFTGADLTEICQRAAKLAIRED 388
            +F DE+D+I                 ++ +LL +MDG     NV VI ATNR D +DPAL+RPGRLD+ I  P+PD   +  +   V  +  +S DVDL    A+ +K +GAD+  ICQ A   A+RE+
Sbjct:  258 IFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQSTNVKVIMATNRQDTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTVCSRMNLSDDVDLEDWVARPDKISGADINSICQEAGMQAVREN 386          
BLAST of CX300926 vs. ExPASy Swiss-Prot
Match: PEX1_DICDI (Peroxisome biogenesis factor 1 OS=Dictyostelium discoideum GN=pex1 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 7.919e-21
Identity = 53/128 (41.41%), Postives = 74/128 (57.81%), Query Frame = 2
Query:    2 LFFDELDSIXXXXXXXXXXXXXXXXXVMNQLLTEMDGVGAKKNVFVIGATNRPDIIDPALMRPGRLDQLIYIPMPDYESRLSILKAVLRKTPVSKDVDLSYLAAQTEKFTGADLTEICQRAAKLAIRE 385
            LFFDE DSI                 V+NQ LT++DGV     V+V+ AT+RPD+IDPAL+RPGRLD+ +Y  +P++  RL IL  +  K  +S  + L  L+  T+ +TGADL  +   A   +I E
Sbjct:  963 LFFDEFDSIAPRRGHDNSGVTDR---VVNQFLTQLDGVEGLTGVYVLAATSRPDLIDPALLRPGRLDKSLYCNIPEFNERLDILTCLKSKMNLSPSISLEQLSTNTQYYTGADLRALMYNAQLKSIHE 1087          
The following BLAST results are available for this feature:
BLAST of CX300926 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 323
Match NameE-valueIdentityDescription
FTSH_BACSU3.555e-2138.76Cell division protease ftsH homolog OS=Bacillus su... [more]
PSMR_METMJ4.643e-2141.73Proteasome-activating nucleotidase OS=Methanoculle... [more]
PSMR_AERPE4.643e-2144.09Proteasome-activating nucleotidase OS=Aeropyrum pe... [more]
PSMR_SULTO6.063e-2139.37Proteasome-activating nucleotidase OS=Sulfolobus t... [more]
FTSH_CYACA6.063e-2140.16Cell division protease ftsH homolog OS=Cyanidium c... [more]
AFG32_MOUSE6.063e-2141.22AFG3-like protein 2 OS=Mus musculus GN=Afg3l2 PE=1... [more]
AFG32_HUMAN6.063e-2141.22AFG3-like protein 2 OS=Homo sapiens GN=AFG3L2 PE=1... [more]
PRS6B_MOUSE7.919e-2139.8426S protease regulatory subunit 6B OS=Mus musculus... [more]
PRS6B_CAEEL7.919e-2139.53Probable 26S protease regulatory subunit 6B OS=Cae... [more]
PEX1_DICDI7.919e-2141.41Peroxisome biogenesis factor 1 OS=Dictyostelium di... [more]

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Properties
Property NameValue
Genbank descriptionC08003G07SK PhyRootSw1 Citrus sinensis cDNA clone C08003G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300926 ID=CX300926; Name=CX300926; organism=Citrus sinensis; type=EST; length=394bp
GTTGTTCTTTGATGAGTTAGATTCTATCGCTCAACAGCGTGGTGGAAGTC
AAGGAGATGGTGGAGGAGCTGGCGATCGTGTAATGAATCAGCTTCTTACT
GAAATGGACGGTGTTGGTGCCAAGAAGAATGTGTTCGTGATTGGAGCCAC
CAATAGACCTGACATCATTGACCCTGCTTTGATGAGACCTGGACGTTTAG
ATCAATTAATTTACATTCCTATGCCAGACTACGAATCAAGATTGTCAATT
TTAAAGGCTGTTTTAAGAAAGACTCCTGTGAGTAAGGACGTTGATCTTTC
CTACTTGGCTGCTCAAACCGAGAAGTTTACTGGTGCTGATTTGACTGAGA
TCTGCCAGCGTGCTGCTAAACTCGCTATTCGAGAAGATATCATG
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