CX300926

Overview
NameCX300926
Unique NameCX300926
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length394
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300926 vs. ExPASy Swiss-Prot
Match: FTSH_CYAME (Cell division protease ftsH homolog OS=Cyanidioschyzon merolae GN=ftsH PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 7.919e-21
Identity = 52/130 (40.00%), Postives = 72/130 (55.38%), Query Frame = 2
Query:    2 LFFDELDSIXXXXXXXXXXXXXXXXXVMNQLLTEMDGVGAKKNVFVIGATNRPDIIDPALMRPGRLDQLIYIPMPDYESRLSILKAVLRKTPVSKDVDLSYLAAQTEKFTGADLTEICQRAAKLAIREDI 391
            +F DE+D++                  +NQLLTEMDG      V VI ATNR D++D AL+RPGR D+ I + MPD +SR++ILK    +  +   V L  +A +T  F GADL  +   AA LA+R  +
Sbjct:  250 VFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFEGNTGVIVIAATNRVDVLDAALLRPGRFDRQIMVSMPDVKSRIAILKVHANQKKLHPQVSLEAVARRTAGFAGADLANLLNEAAILAVRRGL 379          
BLAST of CX300926 vs. ExPASy Swiss-Prot
Match: AFG32_BOVIN (AFG3-like protein 2 OS=Bos taurus GN=AFG3L2 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 7.919e-21
Identity = 54/131 (41.22%), Postives = 72/131 (54.96%), Query Frame = 2
Query:    2 LFFDELDSIXXXXXXXXXXXXXXXXXVMNQLLTEMDGVGAKKNVFVIGATNRPDIIDPALMRPGRLDQLIYIPMPDYESRLSILKAVLR----KTPVSKDVDLSYLAAQTEKFTGADLTEICQRAAKLAIR 382
            LF DE+D++                  +NQLL EMDG     NV ++  TNRPDI+DPALMRPGR D+ I+I  PD + R SI K  LR     + + K+     LA+ T  F+GAD+  +C  AA +A R
Sbjct:  405 LFIDEIDAVGRKRGRGNFGGQSEQENTLNQLLVEMDGFNTTTNVVILAGTNRPDILDPALMRPGRFDRQIFIGPPDIKGRASIFKVHLRPLKLDSTLEKEKLARKLASLTPGFSGADVANVCNEAALIAAR 535          
BLAST of CX300926 vs. ExPASy Swiss-Prot
Match: PSMR_METVS (Proteasome-activating nucleotidase OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=pan PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.034e-20
Identity = 52/128 (40.62%), Postives = 71/128 (55.47%), Query Frame = 2
Query:    2 LFFDELDSIXXXXXXXXXXXXXXXXXVMNQLLTEMDGVGAKKNVFVIGATNRPDIIDPALMRPGRLDQLIYIPMPDYESRLSILKAVLRKTPVSKDVDLSYLAAQTEKFTGADLTEICQRAAKLAIRE 385
            +F DE+D++                  + QLL EMDG  ++ +V +I ATNRPDI+DPA++RPGR D++I I  PD + RL I K    K  + K VDL  +A   E   GAD+  +C  A   AIRE
Sbjct:  245 IFIDEIDAVASKRTESLTGGDREVQRTLMQLLAEMDGFDSRGDVKIIAATNRPDILDPAILRPGRFDRIIEIAAPDEDGRLEIFKIHTDKMNI-KSVDLREIAKMAENMVGADIKAVCTEAGMFAIRE 371          
BLAST of CX300926 vs. ExPASy Swiss-Prot
Match: AFG2_YEAST (ATPase family gene 2 protein OS=Saccharomyces cerevisiae GN=AFG2 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.034e-20
Identity = 56/131 (42.75%), Postives = 77/131 (58.78%), Query Frame = 2
Query:    2 LFFDELDSIXXXXXXXXXXXXXXXXXVMNQLLTEMDGVGAKKNVFVIGATNRPDIIDPALMRPGRLDQLIYIPMPDYESRLSILKAVLRKTPVSKD-VDLSYLAAQTEKFTGADLTEICQRAAKLAIREDI 391
            +FFDE+D++                 V+  LL E+DGV   K V ++ ATNRPD ID AL+RPGRLD+ IY+  PD  +RL ILK   +K    +  VDL  LA +TE ++GA++  +CQ A   AI ED+
Sbjct:  613 IFFDEIDALSPDRDGSSTSAANH---VLTSLLNEIDGVEELKGVVIVAATNRPDEIDAALLRPGRLDRHIYVGPPDVNARLEILKKCTKKFNTEESGVDLHELADRTEGYSGAEVVLLCQEAGLAAIMEDL 740          

HSP 2 Score: 85.8853 bits (211), Expect = 6.937e-17
Identity = 50/134 (37.31%), Postives = 72/134 (53.73%), Query Frame = 2
Query:    2 LFFDELDSIXXXXXXXXXXXXXXXXXVMNQLLTEMDGVGAKKNVFVIGATNRPDIIDPALMRPGRLDQLIYIPMPDYESRLSILKAVLRKTPVSKDV----DLSYLAAQTEKFTGADLTEICQRAAKLAIREDI 391
            +F DE+DSI                 V+  LLT MDG+GA   V VI ATNRP+ +DPAL RPGR DQ + I +PD ++R  IL     +    + V     + Y+A++T  + GADLT +C+ +    I+  +
Sbjct:  342 IFIDEIDSIAPNRANDDSGEVESR--VVATLLTLMDGMGAAGKVVVIAATNRPNSVDPALRRPGRFDQEVEIGIPDVDARFDILTKQFSRMSSDRHVLDSEAIKYIASKTHGYVGADLTALCRESVMKTIQRGL 473          
BLAST of CX300926 vs. ExPASy Swiss-Prot
Match: FTSH_LACLA (Cell division protease ftsH homolog OS=Lactococcus lactis subsp. lactis GN=ftsH PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.351e-20
Identity = 51/130 (39.23%), Postives = 74/130 (56.92%), Query Frame = 2
Query:    2 LFFDELDSIXXXXXXXXXXXXXXXXXVMNQLLTEMDGVGAKKN-VFVIGATNRPDIIDPALMRPGRLDQLIYIPMPDYESRLSILKAVLRKTPVSKDVDLSYLAAQTEKFTGADLTEICQRAAKLAIRED 388
            +F DE+D++                  +NQLL EMDG     N V VI ATNR D++DPAL+RPGR D+ + +  PD + R ++LK   +  P++ DVDL  +A QT  + GADL  +   AA +A R++
Sbjct:  289 IFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFQDDGNSVIVIAATNRSDVLDPALLRPGRFDRKVLVGAPDVKGREAVLKVHAKNKPLASDVDLHNVATQTPGYVGADLENVLNEAALVAARQN 418          
BLAST of CX300926 vs. ExPASy Swiss-Prot
Match: PRS6B_MANSE (26S protease regulatory subunit 6B OS=Manduca sexta PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.764e-20
Identity = 50/129 (38.76%), Postives = 73/129 (56.59%), Query Frame = 2
Query:    2 LFFDELDSIXXXXXXXXXXXXXXXXXVMNQLLTEMDGVGAKKNVFVIGATNRPDIIDPALMRPGRLDQLIYIPMPDYESRLSILKAVLRKTPVSKDVDLSYLAAQTEKFTGADLTEICQRAAKLAIRED 388
            +F DE+D+I                 ++ +LL +MDG     NV VI ATNR D +DPAL+RPGRLD+ I  P+PD   +  I   +  K  +S++VDL    A+ ++ +GAD+  ICQ A   A+RE+
Sbjct:  259 IFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITAKMNLSEEVDLEEFVARPDRVSGADINAICQEAGMNAVREN 387          
BLAST of CX300926 vs. ExPASy Swiss-Prot
Match: FTSH9_ARATH (Cell division protease ftsH homolog 9, chloroplastic OS=Arabidopsis thaliana GN=FTSH9 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.764e-20
Identity = 56/134 (41.79%), Postives = 77/134 (57.46%), Query Frame = 2
Query:    2 LFFDELDSIXXXXXXXXXXXXXXXXX-VMNQLLTEMDGVGAKKNVFVIGATNRPDIIDPALMRPGRLDQLIYIPMPDYESRLSILKAVLRK--TPVSKDVDLSYLAAQTEKFTGADLTEICQRAAKLAIREDIM 394
            +F DE+D++                   +NQLLTEMDG  +   V V+GATNR D++DPAL RPGR D+++ +  PD   R SILK  + K   P+  DV+L+ +A+ T  FTGADL  +   AA LA R+  M
Sbjct:  425 IFIDEIDAVAKSRDGKFRMVSNDEREQTLNQLLTEMDGFDSSSAVIVLGATNRADVLDPALRRPGRFDRVVTVESPDKVGRESILKVHVSKKELPLGDDVNLASIASMTTGFTGADLANLVNEAALLAGRKSKM 558          
BLAST of CX300926 vs. ExPASy Swiss-Prot
Match: FTSH2_HAEIN (Cell division protease ftsH homolog 2 OS=Haemophilus influenzae GN=ftsH-B PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.764e-20
Identity = 48/100 (48.00%), Postives = 63/100 (63.00%), Query Frame = 2
Query:   83 MNQLLTEMDGVGAKKNVFVIGATNRPDIIDPALMRPGRLDQLIYIPMPDYESRLSILKAVLRKTPVSKDVDLSYLAAQTEKFTGADLTEICQRAAKLAIR 382
            +NQ+L EMDG      V VI ATNRPD++DPAL RPGR D+ + + +PD + R  ILK  +RK  V++DVD   LA  T  ++GADL  +   AA  A R
Sbjct:   20 LNQMLVEMDGFSGNDGVIVIAATNRPDVLDPALTRPGRFDRQVVVGLPDVKGREQILKVHMRKVSVAQDVDAMTLARGTPGYSGADLANLVNEAALFAAR 119          
BLAST of CX300926 vs. ExPASy Swiss-Prot
Match: FTSH1_SYNY3 (Cell division protease ftsH homolog 1 OS=Synechocystis sp. (strain PCC 6803) GN=slr0228 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.764e-20
Identity = 48/127 (37.80%), Postives = 69/127 (54.33%), Query Frame = 2
Query:    2 LFFDELDSIXXXXXXXXXXXXXXXXXVMNQLLTEMDGVGAKKNVFVIGATNRPDIIDPALMRPGRLDQLIYIPMPDYESRLSILKAVLRKTPVSKDVDLSYLAAQTEKFTGADLTEICQRAAKLAIR 382
            +F DE+D++                  +NQLLTEMDG      + +I ATNRPD++D ALMRPGR D+ + +  PDY  R  IL+   R   ++ +V +  +A +T  F+GADL  +   AA L  R
Sbjct:  268 IFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFEGNTGIIIIAATNRPDVLDSALMRPGRFDRQVMVDAPDYSGRKEILEVHARNKKLAPEVSIDSIARRTPGFSGADLANLLNEAAILTAR 394          
BLAST of CX300926 vs. ExPASy Swiss-Prot
Match: PRS6B_ENCCU (26S protease regulatory subunit 6B homolog OS=Encephalitozoon cuniculi GN=ECU08_1970 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.304e-20
Identity = 52/127 (40.94%), Postives = 70/127 (55.12%), Query Frame = 2
Query:    2 LFFDELDSIXXXXXXXXXXXXXXXXXVMNQLLTEMDGVGAKKNVFVIGATNRPDIIDPALMRPGRLDQLIYIPMPDYESRLSILKAVLRKTPVSKDVDLSYLAAQTEKFTGADLTEICQRAAKLAIR 382
            +F DE+DSI                 V+ +LL +MDG     NV VI ATNR D IDPAL+RPGRLD+ I  P+PD   +  +  A+  K  ++  VD+  L  + EK + AD+  ICQ A  LA+R
Sbjct:  231 VFIDEVDSIATKRFDASTSADREVQRVLIELLNQMDGFDPAANVKVIMATNRADTIDPALLRPGRLDRKIEFPLPDRRQKRLVFNAITSKMSLNDSVDIESLVCRPEKISCADINSICQEAGMLAVR 357          
The following BLAST results are available for this feature:
BLAST of CX300926 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 323
Match NameE-valueIdentityDescription
FTSH_CYAME7.919e-2140.00Cell division protease ftsH homolog OS=Cyanidiosch... [more]
AFG32_BOVIN7.919e-2141.22AFG3-like protein 2 OS=Bos taurus GN=AFG3L2 PE=2 S... [more]
PSMR_METVS1.034e-2040.63Proteasome-activating nucleotidase OS=Methanococcu... [more]
AFG2_YEAST1.034e-2042.75ATPase family gene 2 protein OS=Saccharomyces cere... [more]
FTSH_LACLA1.351e-2039.23Cell division protease ftsH homolog OS=Lactococcus... [more]
PRS6B_MANSE1.764e-2038.7626S protease regulatory subunit 6B OS=Manduca sext... [more]
FTSH9_ARATH1.764e-2041.79Cell division protease ftsH homolog 9, chloroplast... [more]
FTSH2_HAEIN1.764e-2048.00Cell division protease ftsH homolog 2 OS=Haemophil... [more]
FTSH1_SYNY31.764e-2037.80Cell division protease ftsH homolog 1 OS=Synechocy... [more]
PRS6B_ENCCU2.304e-2040.9426S protease regulatory subunit 6B homolog OS=Ence... [more]

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Properties
Property NameValue
Genbank descriptionC08003G07SK PhyRootSw1 Citrus sinensis cDNA clone C08003G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300926 ID=CX300926; Name=CX300926; organism=Citrus sinensis; type=EST; length=394bp
GTTGTTCTTTGATGAGTTAGATTCTATCGCTCAACAGCGTGGTGGAAGTC
AAGGAGATGGTGGAGGAGCTGGCGATCGTGTAATGAATCAGCTTCTTACT
GAAATGGACGGTGTTGGTGCCAAGAAGAATGTGTTCGTGATTGGAGCCAC
CAATAGACCTGACATCATTGACCCTGCTTTGATGAGACCTGGACGTTTAG
ATCAATTAATTTACATTCCTATGCCAGACTACGAATCAAGATTGTCAATT
TTAAAGGCTGTTTTAAGAAAGACTCCTGTGAGTAAGGACGTTGATCTTTC
CTACTTGGCTGCTCAAACCGAGAAGTTTACTGGTGCTGATTTGACTGAGA
TCTGCCAGCGTGCTGCTAAACTCGCTATTCGAGAAGATATCATG
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