CX300926
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX300926 vs. ExPASy Swiss-Prot
Match: PRS6A_ORYSJ (26S protease regulatory subunit 6A homolog OS=Oryza sativa subsp. japonica GN=TBP1 PE=2 SV=2) HSP 1 Score: 97.4413 bits (241), Expect = 2.304e-20 Identity = 53/129 (41.09%), Postives = 71/129 (55.04%), Query Frame = 2 Query: 2 LFFDELDSIXXXXXXXXXXXXXXXXXVMNQLLTEMDGVGAKKNVFVIGATNRPDIIDPALMRPGRLDQLIYIPMPDYESRLSILKAVLRKTPVSKDVDLSYLAAQTEKFTGADLTEICQRAAKLAIRED 388 +F DE+D+I M +LL ++DG + + + VI ATNR DI+DPALMR GRLD+ I P P E+R IL+ RK V+ DV+ LA T+ F GA L +C A LA+R D Sbjct: 273 IFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDERIKVIAATNRADILDPALMRSGRLDRKIEFPHPSEEARARILQIHSRKMNVNPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRD 401
BLAST of CX300926 vs. ExPASy Swiss-Prot
Match: PRS6A_DICDI (26S protease regulatory subunit 6A homolog OS=Dictyostelium discoideum GN=psmC3 PE=1 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 2.304e-20 Identity = 53/127 (41.73%), Postives = 72/127 (56.69%), Query Frame = 2 Query: 2 LFFDELDSIXXXXXXXXXXXXXXXXXVMNQLLTEMDGVGAKKNVFVIGATNRPDIIDPALMRPGRLDQLIYIPMPDYESRLSILKAVLRKTPVSKDVDLSYLAAQTEKFTGADLTEICQRAAKLAIR 382 +F DELD+I M +LL ++DG + N+ VI ATNR DI+DPAL+R GRLD+ I P+P+ E+R IL+ RK VS DV+ LA +E F GA L +C A +A+R Sbjct: 265 IFIDELDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDANIKVIAATNRIDILDPALLRSGRLDRKIEFPLPNEEARAHILQIHSRKMNVSADVNFDELARSSEDFNGAQLKAVCVEAGMIALR 391
BLAST of CX300926 vs. ExPASy Swiss-Prot
Match: FTSH_MYCPU (Cell division protease ftsH homolog OS=Mycoplasma pulmonis GN=ftsH PE=3 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 3.009e-20 Identity = 45/128 (35.16%), Postives = 74/128 (57.81%), Query Frame = 2 Query: 2 LFFDELDSIXXXXXXXXXXXXXXXXXVMNQLLTEMDGVGAKKNVFVIGATNRPDIIDPALMRPGRLDQLIYIPMPDYESRLSILKAVLRKTPVSKDVDLSYLAAQTEKFTGADLTEICQRAAKLAIRE 385 +F DELD++ +NQ+L EMDG+ + ++GATNR D++DPAL+RPGR D++I + +PD + R ILK + +SK++ +A +T ++GA L + A+ L++RE Sbjct: 308 IFIDELDAVGRSRGSGIGGGNDEREQTLNQILVEMDGINENAGILIMGATNRTDVLDPALLRPGRFDRIITVGLPDIKEREEILKLHSKGKRLSKEIKFDKIAKRTPGYSGAQLENVINEASLLSVRE 435
BLAST of CX300926 vs. ExPASy Swiss-Prot
Match: PS6AA_ARATH (26S protease regulatory subunit 6A homolog A OS=Arabidopsis thaliana GN=RPT5A PE=2 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 5.133e-20 Identity = 53/129 (41.09%), Postives = 70/129 (54.26%), Query Frame = 2 Query: 2 LFFDELDSIXXXXXXXXXXXXXXXXXVMNQLLTEMDGVGAKKNVFVIGATNRPDIIDPALMRPGRLDQLIYIPMPDYESRLSILKAVLRKTPVSKDVDLSYLAAQTEKFTGADLTEICQRAAKLAIRED 388 +F DE+D+I M +LL ++DG + + + VI ATNR DI+DPALMR GRLD+ I P P E+R IL+ RK V DV+ LA T+ F GA L +C A LA+R D Sbjct: 268 IFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDERIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRD 396
BLAST of CX300926 vs. ExPASy Swiss-Prot
Match: PRS6A_SOLLC (26S protease regulatory subunit 6A homolog OS=Solanum lycopersicum GN=TBP1 PE=2 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 5.133e-20 Identity = 53/129 (41.09%), Postives = 70/129 (54.26%), Query Frame = 2 Query: 2 LFFDELDSIXXXXXXXXXXXXXXXXXVMNQLLTEMDGVGAKKNVFVIGATNRPDIIDPALMRPGRLDQLIYIPMPDYESRLSILKAVLRKTPVSKDVDLSYLAAQTEKFTGADLTEICQRAAKLAIRED 388 +F DE+D+I M +LL ++DG + + VI ATNR DI+DPALMR GRLD+ I P P E+R IL+ RK V+ DV+ LA T+ F GA L +C A LA+R D Sbjct: 267 IFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVNPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRD 395
BLAST of CX300926 vs. ExPASy Swiss-Prot
Match: PRS6A_BRACM (26S protease regulatory subunit 6A homolog OS=Brassica campestris GN=TBP1 PE=2 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 5.133e-20 Identity = 53/129 (41.09%), Postives = 70/129 (54.26%), Query Frame = 2 Query: 2 LFFDELDSIXXXXXXXXXXXXXXXXXVMNQLLTEMDGVGAKKNVFVIGATNRPDIIDPALMRPGRLDQLIYIPMPDYESRLSILKAVLRKTPVSKDVDLSYLAAQTEKFTGADLTEICQRAAKLAIRED 388 +F DE+D+I M +LL ++DG + + + VI ATNR DI+DPALMR GRLD+ I P P E+R IL+ RK V DV+ LA T+ F GA L +C A LA+R D Sbjct: 268 IFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDERIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRD 396
BLAST of CX300926 vs. ExPASy Swiss-Prot
Match: PRS7_PONAB (26S protease regulatory subunit 7 OS=Pongo abelii GN=PSMC2 PE=2 SV=3) HSP 1 Score: 95.9005 bits (237), Expect = 6.704e-20 Identity = 50/127 (39.37%), Postives = 68/127 (53.54%), Query Frame = 2 Query: 2 LFFDELDSIXXXXXXXXXXXXXXXXXVMNQLLTEMDGVGAKKNVFVIGATNRPDIIDPALMRPGRLDQLIYIPMPDYESRLSILKAVLRKTPVSKDVDLSYLAAQTEKFTGADLTEICQRAAKLAIR 382 +FFDE+D+I M +L+ ++DG + N+ V+ ATNRPD +DPALMRPGRLD+ I +PD E R ILK R V +D+ LA TGA++ +C A AIR Sbjct: 272 IFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHILKIHARSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIR 398
BLAST of CX300926 vs. ExPASy Swiss-Prot
Match: FTSH_HELFE (Cell division protease ftsH homolog OS=Helicobacter felis GN=ftsH PE=3 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 6.704e-20 Identity = 53/131 (40.46%), Postives = 75/131 (57.25%), Query Frame = 2 Query: 2 LFFDELDSIXXXXXXXXXXXXXXXXX-VMNQLLTEMDGVGAKKN-VFVIGATNRPDIIDPALMRPGRLDQLIYIPMPDYESRLSILKAVLRKTPVSKDVDLSYLAAQTEKFTGADLTEICQRAAKLAIRED 388 +F DE+D+I +NQLL EMDG G++ V V+ ATNRP+I+DPAL+RPGR D+ + + PD++ R+ ILK ++ ++ DVDL +A T GADL I AA LA R + Sbjct: 272 IFIDEIDAIGKSRAAGGMISGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALLRPGRFDRQVLVDKPDFKGRVEILKVHIKPVKLANDVDLQEIAKLTAGLAGADLANIINEAALLAGRNN 402
BLAST of CX300926 vs. ExPASy Swiss-Prot
Match: FTSH7_ARATH (Cell division protease ftsH homolog 7, chloroplastic OS=Arabidopsis thaliana GN=FTSH7 PE=2 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 8.756e-20 Identity = 54/132 (40.91%), Postives = 76/132 (57.58%), Query Frame = 2 Query: 2 LFFDELDSIXXXXXXXXXXXXXXXXX-VMNQLLTEMDGVGAKKNVFVIGATNRPDIIDPALMRPGRLDQLIYIPMPDYESRLSILKAVLRK--TPVSKDVDLSYLAAQTEKFTGADLTEICQRAAKLAIRED 388 +F DE+D++ +NQLLTEMDG + V V+GATNR D++DPAL RPGR D+++ + PD R SIL+ + K P+ DV+L +A+ T FTGADL + AA LA R++ Sbjct: 421 IFIDEIDAVAKSRDGKFRMGSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRADVLDPALRRPGRFDRVVTVETPDKIGRESILRVHVSKKELPLGDDVNLGSIASMTTGFTGADLANLVNEAALLAGRKN 552
BLAST of CX300926 vs. ExPASy Swiss-Prot
Match: FTSH3_SYNY3 (Cell division protease ftsH homolog 3 OS=Synechocystis sp. (strain PCC 6803) GN=sll1463 PE=3 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 8.756e-20 Identity = 54/129 (41.86%), Postives = 72/129 (55.81%), Query Frame = 2 Query: 2 LFFDELDSIXXXXXXXXXXXXXXXXX-VMNQLLTEMDGVGAK-KNVFVIGATNRPDIIDPALMRPGRLDQLIYIPMPDYESRLSILKAVLRKTPVSKDVDLSYLAAQTEKFTGADLTEICQRAAKLAIR 382 +F DELD+I +NQLLTEMDG A V V+ ATNRP+ +DPAL+RPGR D+ + + PD RL IL+ +K + K+V+L +A +T F GADL + AA LA R Sbjct: 270 VFIDELDAIGKSRASGAFMGGNDEREQTLNQLLTEMDGFSAAGATVIVLAATNRPETLDPALLRPGRFDRQVLVDRPDLAGRLKILEIYAKKIKLDKEVELKNIATRTPGFAGADLANLVNEAALLAAR 398 The following BLAST results are available for this feature:
BLAST of CX300926 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 323
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX300926 ID=CX300926; Name=CX300926; organism=Citrus sinensis; type=EST; length=394bpback to top |