CX300926

Overview
NameCX300926
Unique NameCX300926
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length394
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300926 vs. ExPASy Swiss-Prot
Match: PRS6A_ORYSJ (26S protease regulatory subunit 6A homolog OS=Oryza sativa subsp. japonica GN=TBP1 PE=2 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 2.304e-20
Identity = 53/129 (41.09%), Postives = 71/129 (55.04%), Query Frame = 2
Query:    2 LFFDELDSIXXXXXXXXXXXXXXXXXVMNQLLTEMDGVGAKKNVFVIGATNRPDIIDPALMRPGRLDQLIYIPMPDYESRLSILKAVLRKTPVSKDVDLSYLAAQTEKFTGADLTEICQRAAKLAIRED 388
            +F DE+D+I                  M +LL ++DG  + + + VI ATNR DI+DPALMR GRLD+ I  P P  E+R  IL+   RK  V+ DV+   LA  T+ F GA L  +C  A  LA+R D
Sbjct:  273 IFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDERIKVIAATNRADILDPALMRSGRLDRKIEFPHPSEEARARILQIHSRKMNVNPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRD 401          
BLAST of CX300926 vs. ExPASy Swiss-Prot
Match: PRS6A_DICDI (26S protease regulatory subunit 6A homolog OS=Dictyostelium discoideum GN=psmC3 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.304e-20
Identity = 53/127 (41.73%), Postives = 72/127 (56.69%), Query Frame = 2
Query:    2 LFFDELDSIXXXXXXXXXXXXXXXXXVMNQLLTEMDGVGAKKNVFVIGATNRPDIIDPALMRPGRLDQLIYIPMPDYESRLSILKAVLRKTPVSKDVDLSYLAAQTEKFTGADLTEICQRAAKLAIR 382
            +F DELD+I                  M +LL ++DG  +  N+ VI ATNR DI+DPAL+R GRLD+ I  P+P+ E+R  IL+   RK  VS DV+   LA  +E F GA L  +C  A  +A+R
Sbjct:  265 IFIDELDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDANIKVIAATNRIDILDPALLRSGRLDRKIEFPLPNEEARAHILQIHSRKMNVSADVNFDELARSSEDFNGAQLKAVCVEAGMIALR 391          
BLAST of CX300926 vs. ExPASy Swiss-Prot
Match: FTSH_MYCPU (Cell division protease ftsH homolog OS=Mycoplasma pulmonis GN=ftsH PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.009e-20
Identity = 45/128 (35.16%), Postives = 74/128 (57.81%), Query Frame = 2
Query:    2 LFFDELDSIXXXXXXXXXXXXXXXXXVMNQLLTEMDGVGAKKNVFVIGATNRPDIIDPALMRPGRLDQLIYIPMPDYESRLSILKAVLRKTPVSKDVDLSYLAAQTEKFTGADLTEICQRAAKLAIRE 385
            +F DELD++                  +NQ+L EMDG+     + ++GATNR D++DPAL+RPGR D++I + +PD + R  ILK   +   +SK++    +A +T  ++GA L  +   A+ L++RE
Sbjct:  308 IFIDELDAVGRSRGSGIGGGNDEREQTLNQILVEMDGINENAGILIMGATNRTDVLDPALLRPGRFDRIITVGLPDIKEREEILKLHSKGKRLSKEIKFDKIAKRTPGYSGAQLENVINEASLLSVRE 435          
BLAST of CX300926 vs. ExPASy Swiss-Prot
Match: PS6AA_ARATH (26S protease regulatory subunit 6A homolog A OS=Arabidopsis thaliana GN=RPT5A PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.133e-20
Identity = 53/129 (41.09%), Postives = 70/129 (54.26%), Query Frame = 2
Query:    2 LFFDELDSIXXXXXXXXXXXXXXXXXVMNQLLTEMDGVGAKKNVFVIGATNRPDIIDPALMRPGRLDQLIYIPMPDYESRLSILKAVLRKTPVSKDVDLSYLAAQTEKFTGADLTEICQRAAKLAIRED 388
            +F DE+D+I                  M +LL ++DG  + + + VI ATNR DI+DPALMR GRLD+ I  P P  E+R  IL+   RK  V  DV+   LA  T+ F GA L  +C  A  LA+R D
Sbjct:  268 IFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDERIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRD 396          
BLAST of CX300926 vs. ExPASy Swiss-Prot
Match: PRS6A_SOLLC (26S protease regulatory subunit 6A homolog OS=Solanum lycopersicum GN=TBP1 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.133e-20
Identity = 53/129 (41.09%), Postives = 70/129 (54.26%), Query Frame = 2
Query:    2 LFFDELDSIXXXXXXXXXXXXXXXXXVMNQLLTEMDGVGAKKNVFVIGATNRPDIIDPALMRPGRLDQLIYIPMPDYESRLSILKAVLRKTPVSKDVDLSYLAAQTEKFTGADLTEICQRAAKLAIRED 388
            +F DE+D+I                  M +LL ++DG  +   + VI ATNR DI+DPALMR GRLD+ I  P P  E+R  IL+   RK  V+ DV+   LA  T+ F GA L  +C  A  LA+R D
Sbjct:  267 IFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVNPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRD 395          
BLAST of CX300926 vs. ExPASy Swiss-Prot
Match: PRS6A_BRACM (26S protease regulatory subunit 6A homolog OS=Brassica campestris GN=TBP1 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.133e-20
Identity = 53/129 (41.09%), Postives = 70/129 (54.26%), Query Frame = 2
Query:    2 LFFDELDSIXXXXXXXXXXXXXXXXXVMNQLLTEMDGVGAKKNVFVIGATNRPDIIDPALMRPGRLDQLIYIPMPDYESRLSILKAVLRKTPVSKDVDLSYLAAQTEKFTGADLTEICQRAAKLAIRED 388
            +F DE+D+I                  M +LL ++DG  + + + VI ATNR DI+DPALMR GRLD+ I  P P  E+R  IL+   RK  V  DV+   LA  T+ F GA L  +C  A  LA+R D
Sbjct:  268 IFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDERIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRD 396          
BLAST of CX300926 vs. ExPASy Swiss-Prot
Match: PRS7_PONAB (26S protease regulatory subunit 7 OS=Pongo abelii GN=PSMC2 PE=2 SV=3)

HSP 1 Score: 95.9005 bits (237), Expect = 6.704e-20
Identity = 50/127 (39.37%), Postives = 68/127 (53.54%), Query Frame = 2
Query:    2 LFFDELDSIXXXXXXXXXXXXXXXXXVMNQLLTEMDGVGAKKNVFVIGATNRPDIIDPALMRPGRLDQLIYIPMPDYESRLSILKAVLRKTPVSKDVDLSYLAAQTEKFTGADLTEICQRAAKLAIR 382
            +FFDE+D+I                  M +L+ ++DG   + N+ V+ ATNRPD +DPALMRPGRLD+ I   +PD E R  ILK   R   V +D+    LA      TGA++  +C  A   AIR
Sbjct:  272 IFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHILKIHARSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIR 398          
BLAST of CX300926 vs. ExPASy Swiss-Prot
Match: FTSH_HELFE (Cell division protease ftsH homolog OS=Helicobacter felis GN=ftsH PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.704e-20
Identity = 53/131 (40.46%), Postives = 75/131 (57.25%), Query Frame = 2
Query:    2 LFFDELDSIXXXXXXXXXXXXXXXXX-VMNQLLTEMDGVGAKKN-VFVIGATNRPDIIDPALMRPGRLDQLIYIPMPDYESRLSILKAVLRKTPVSKDVDLSYLAAQTEKFTGADLTEICQRAAKLAIRED 388
            +F DE+D+I                   +NQLL EMDG G++   V V+ ATNRP+I+DPAL+RPGR D+ + +  PD++ R+ ILK  ++   ++ DVDL  +A  T    GADL  I   AA LA R +
Sbjct:  272 IFIDEIDAIGKSRAAGGMISGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALLRPGRFDRQVLVDKPDFKGRVEILKVHIKPVKLANDVDLQEIAKLTAGLAGADLANIINEAALLAGRNN 402          
BLAST of CX300926 vs. ExPASy Swiss-Prot
Match: FTSH7_ARATH (Cell division protease ftsH homolog 7, chloroplastic OS=Arabidopsis thaliana GN=FTSH7 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.756e-20
Identity = 54/132 (40.91%), Postives = 76/132 (57.58%), Query Frame = 2
Query:    2 LFFDELDSIXXXXXXXXXXXXXXXXX-VMNQLLTEMDGVGAKKNVFVIGATNRPDIIDPALMRPGRLDQLIYIPMPDYESRLSILKAVLRK--TPVSKDVDLSYLAAQTEKFTGADLTEICQRAAKLAIRED 388
            +F DE+D++                   +NQLLTEMDG  +   V V+GATNR D++DPAL RPGR D+++ +  PD   R SIL+  + K   P+  DV+L  +A+ T  FTGADL  +   AA LA R++
Sbjct:  421 IFIDEIDAVAKSRDGKFRMGSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRADVLDPALRRPGRFDRVVTVETPDKIGRESILRVHVSKKELPLGDDVNLGSIASMTTGFTGADLANLVNEAALLAGRKN 552          
BLAST of CX300926 vs. ExPASy Swiss-Prot
Match: FTSH3_SYNY3 (Cell division protease ftsH homolog 3 OS=Synechocystis sp. (strain PCC 6803) GN=sll1463 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.756e-20
Identity = 54/129 (41.86%), Postives = 72/129 (55.81%), Query Frame = 2
Query:    2 LFFDELDSIXXXXXXXXXXXXXXXXX-VMNQLLTEMDGVGAK-KNVFVIGATNRPDIIDPALMRPGRLDQLIYIPMPDYESRLSILKAVLRKTPVSKDVDLSYLAAQTEKFTGADLTEICQRAAKLAIR 382
            +F DELD+I                   +NQLLTEMDG  A    V V+ ATNRP+ +DPAL+RPGR D+ + +  PD   RL IL+   +K  + K+V+L  +A +T  F GADL  +   AA LA R
Sbjct:  270 VFIDELDAIGKSRASGAFMGGNDEREQTLNQLLTEMDGFSAAGATVIVLAATNRPETLDPALLRPGRFDRQVLVDRPDLAGRLKILEIYAKKIKLDKEVELKNIATRTPGFAGADLANLVNEAALLAAR 398          
The following BLAST results are available for this feature:
BLAST of CX300926 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 323
Match NameE-valueIdentityDescription
PRS6A_ORYSJ2.304e-2041.0926S protease regulatory subunit 6A homolog OS=Oryz... [more]
PRS6A_DICDI2.304e-2041.7326S protease regulatory subunit 6A homolog OS=Dict... [more]
FTSH_MYCPU3.009e-2035.16Cell division protease ftsH homolog OS=Mycoplasma ... [more]
PS6AA_ARATH5.133e-2041.0926S protease regulatory subunit 6A homolog A OS=Ar... [more]
PRS6A_SOLLC5.133e-2041.0926S protease regulatory subunit 6A homolog OS=Sola... [more]
PRS6A_BRACM5.133e-2041.0926S protease regulatory subunit 6A homolog OS=Bras... [more]
PRS7_PONAB6.704e-2039.3726S protease regulatory subunit 7 OS=Pongo abelii ... [more]
FTSH_HELFE6.704e-2040.46Cell division protease ftsH homolog OS=Helicobacte... [more]
FTSH7_ARATH8.756e-2040.91Cell division protease ftsH homolog 7, chloroplast... [more]
FTSH3_SYNY38.756e-2041.86Cell division protease ftsH homolog 3 OS=Synechocy... [more]

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Properties
Property NameValue
Genbank descriptionC08003G07SK PhyRootSw1 Citrus sinensis cDNA clone C08003G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300926 ID=CX300926; Name=CX300926; organism=Citrus sinensis; type=EST; length=394bp
GTTGTTCTTTGATGAGTTAGATTCTATCGCTCAACAGCGTGGTGGAAGTC
AAGGAGATGGTGGAGGAGCTGGCGATCGTGTAATGAATCAGCTTCTTACT
GAAATGGACGGTGTTGGTGCCAAGAAGAATGTGTTCGTGATTGGAGCCAC
CAATAGACCTGACATCATTGACCCTGCTTTGATGAGACCTGGACGTTTAG
ATCAATTAATTTACATTCCTATGCCAGACTACGAATCAAGATTGTCAATT
TTAAAGGCTGTTTTAAGAAAGACTCCTGTGAGTAAGGACGTTGATCTTTC
CTACTTGGCTGCTCAAACCGAGAAGTTTACTGGTGCTGATTTGACTGAGA
TCTGCCAGCGTGCTGCTAAACTCGCTATTCGAGAAGATATCATG
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