CX300926

Overview
NameCX300926
Unique NameCX300926
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length394
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300926 vs. ExPASy Swiss-Prot
Match: NVL_DICDI (Putative ribosome biogenesis ATPase nvl OS=Dictyostelium discoideum GN=nvl PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.181e-24
Identity = 57/128 (44.53%), Postives = 79/128 (61.72%), Query Frame = 2
Query:    2 LFFDELDSIXXXXXXXXXXXXXXXXXVMNQLLTEMDGVGAKKNVFVIGATNRPDIIDPALMRPGRLDQLIYIPMPDYESRLSILKAVLRKTPVSKDVDLSYLAA--QTEKFTGADLTEICQRAAKLAI 379
            +FFDE D++                 V+NQLLTEMDG+  +  VF+I ATNRPDIID A+ RPGRLD+++Y+P+P  E R  ILK +  K P+ +DVDL  +    +   F+GADL+ + + AA  AI
Sbjct:  663 IFFDEFDALAPKRGGGDGGGNQATERVVNQLLTEMDGLEKRSEVFIIAATNRPDIIDAAMCRPGRLDKMVYVPLPSPEERCEILKTLTHKIPIHQDVDLIKVGTDLRCHSFSGADLSLLVKEAANHAI 790          
BLAST of CX300926 vs. ExPASy Swiss-Prot
Match: PSMR_METJA (Proteasome-activating nucleotidase OS=Methanocaldococcus jannaschii GN=pan PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.542e-24
Identity = 58/128 (45.31%), Postives = 78/128 (60.94%), Query Frame = 2
Query:    2 LFFDELDSIXXXXXXXXXXXXXXXXXVMNQLLTEMDGVGAKKNVFVIGATNRPDIIDPALMRPGRLDQLIYIPMPDYESRLSILKAVLRKTPVSKDVDLSYLAAQTEKFTGADLTEICQRAAKLAIRE 385
            +F DE+D+I                  + QLL EMDG  A+ +V +IGATNRPDI+DPA++RPGR D++I +P PD + RL ILK   RK  +++DV+L  +A  TE   GA+L  IC  A   AIRE
Sbjct:  267 IFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRE 394          
BLAST of CX300926 vs. ExPASy Swiss-Prot
Match: PSMR_METAC (Proteasome-activating nucleotidase OS=Methanosarcina acetivorans GN=pan PE=3 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 2.014e-24
Identity = 56/129 (43.41%), Postives = 76/129 (58.91%), Query Frame = 2
Query:    2 LFFDELDSIXXXXXXXXXXXXXXXXXVMNQLLTEMDGVGAKKNVFVIGATNRPDIIDPALMRPGRLDQLIYIPMPDYESRLSILKAVLRKTPVSKDVDLSYLAAQTEKFTGADLTEICQRAAKLAIRED 388
            +F DELDSI                  + QLL EMDG   +KN+ +I ATNRPD++DPA++RPGR D+L+++PMP  E+R  ILK    K  ++ D+D   LA  TE  +GADL  I   A   A+R+D
Sbjct:  256 IFIDELDSIAARRLNETTGADREVQRTLMQLLAEMDGFDKRKNIRIIAATNRPDVLDPAILRPGRFDRLVHVPMPGIEARGKILKIHCGKMTLAGDIDFKKLAKVTEGMSGADLKAIATEAGMFAVRKD 384          
BLAST of CX300926 vs. ExPASy Swiss-Prot
Match: PSMR_PYRHO (Proteasome-activating nucleotidase OS=Pyrococcus horikoshii GN=pan PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.435e-24
Identity = 61/128 (47.66%), Postives = 76/128 (59.38%), Query Frame = 2
Query:    2 LFFDELDSIXXXXXXXXXXXXXXXXXVMNQLLTEMDGVGAKKNVFVIGATNRPDIIDPALMRPGRLDQLIYIPMPDYESRLSILKAVLRKTPVSKDVDLSYLAAQTEKFTGADLTEICQRAAKLAIRE 385
            +F DE+D+I                  + QLL EMDG   + NV VI ATNRPDI+DPAL+RPGR D+LI +P+PD+E RL ILK   R+  + K VDL  +A  TE  +GADL  I   A   AIRE
Sbjct:  237 IFIDEIDAIGAKRMDETTGGEREVNRTLMQLLAEMDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRLIEVPLPDFEGRLEILKVHTRRMKL-KGVDLRAIAEMTEGASGADLKAIATEAGMFAIRE 363          
BLAST of CX300926 vs. ExPASy Swiss-Prot
Match: PSMR_PYRAB (Proteasome-activating nucleotidase OS=Pyrococcus abyssi GN=pan PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.435e-24
Identity = 61/128 (47.66%), Postives = 77/128 (60.16%), Query Frame = 2
Query:    2 LFFDELDSIXXXXXXXXXXXXXXXXXVMNQLLTEMDGVGAKKNVFVIGATNRPDIIDPALMRPGRLDQLIYIPMPDYESRLSILKAVLRKTPVSKDVDLSYLAAQTEKFTGADLTEICQRAAKLAIRE 385
            +F DE+D+I                  + QLL EMDG   + NV VI ATNRPDI+DPAL+RPGR D+LI +P+PD+E RL ILK   R+  + K+VDL  +A  TE  +GADL  I   A   AIRE
Sbjct:  237 IFIDEIDAIGAKRMDETTGGEREVNRTLMQLLAEMDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRLIEVPLPDFEGRLEILKVHTRRMKL-KNVDLRVIAEITEGASGADLKAIATEAGMFAIRE 363          
BLAST of CX300926 vs. ExPASy Swiss-Prot
Match: SAV_SULAC (Protein SAV OS=Sulfolobus acidocaldarius GN=sav PE=3 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 4.486e-24
Identity = 57/127 (44.88%), Postives = 78/127 (61.42%), Query Frame = 2
Query:    2 LFFDELDSIXXXXXXXXXXXXXXXXXVMNQLLTEMDGVGAKKNVFVIGATNRPDIIDPALMRPGRLDQLIYIPMPDYESRLSILKAVLRKTPVSKDVDLSYLAAQTEKFTGADLTEICQRAAKLAIR 382
            +FFDE+DSI                 ++NQLL EMDG+     V +I ATNRPDI+DPAL+RPGR D+LIY+P PD  +R  ILK   +  P+++DV L  +A + E +TGADL  + + A   A+R
Sbjct:  584 IFFDEIDSIAPIRGLSTDSGVTER--IVNQLLAEMDGIVPLNKVVIIAATNRPDILDPALLRPGRFDRLIYVPPPDKTARFEILKVHTKNVPLAEDVSLEDIAEKAEGYTGADLEALVREATINAMR 708          

HSP 2 Score: 100.138 bits (248), Expect = 3.555e-21
Identity = 58/127 (45.67%), Postives = 73/127 (57.48%), Query Frame = 2
Query:    2 LFFDELDSIXXXXXXXXXXXXXXXXXVMNQLLTEMDGVGAKKNVFVIGATNRPDIIDPALMRPGRLDQLIYIPMPDYESRLSILKAVLRKTPVSKDVDLSYLAAQTEKFTGADLTEICQRAAKLAIR 382
            +F DE+D+I                 V+ QLLT MDG+  +  V VIGATNRPD IDPAL RPGR D+ I I  PD + R  IL+   R  P++ DVDL  LA  T  +TGADL  + + AA  A+R
Sbjct:  309 IFIDEIDAIAPKREDVTGEVEKR---VVAQLLTLMDGIKGRGRVIVIGATNRPDAIDPALRRPGRFDREIEIRPPDTKGRKDILQVHTRNMPITDDVDLDKLAEMTYGYTGADLAALAKEAAIYALR 432          
BLAST of CX300926 vs. ExPASy Swiss-Prot
Match: PSMR_ARCFU (Proteasome-activating nucleotidase OS=Archaeoglobus fulgidus GN=pan PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 4.486e-24
Identity = 57/129 (44.19%), Postives = 77/129 (59.69%), Query Frame = 2
Query:    2 LFFDELDSIXXXXXXXXXXXXXXXXXVMNQLLTEMDGVGAKKNVFVIGATNRPDIIDPALMRPGRLDQLIYIPMPDYESRLSILKAVLRKTPVSKDVDLSYLAAQTEKFTGADLTEICQRAAKLAIRED 388
            +F DELD+I                  M QLL E+DG   + +V VIGATNR DI+DPA++RPGR D++I +P+P +E R+ I K   RK  +++DVD   LA  TE  +GAD+  IC  A   AIRE+
Sbjct:  238 IFIDELDAIAARRTNSDTSGDREVQRTMMQLLAELDGFDPRGDVKVIGATNRIDILDPAILRPGRFDRIIEVPLPTFEGRIQIFKIHTRKMKLAEDVDFKELARITEGASGADIKAICTEAGMFAIREE 366          
BLAST of CX300926 vs. ExPASy Swiss-Prot
Match: PEX1_HUMAN (Peroxisome biogenesis factor 1 OS=Homo sapiens GN=PEX1 PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 4.486e-24
Identity = 57/121 (47.11%), Postives = 77/121 (63.64%), Query Frame = 2
Query:    2 LFFDELDSIXXXXXXXXXXXXXXXXXVMNQLLTEMDGVGAKKNVFVIGATNRPDIIDPALMRPGRLDQLIYIPMPDYESRLSILKAVLRKTPVSKDVDLSYLAAQTEKFTGADLTEICQRA 364
            LFFDE +SI                 V+NQLLT++DGV   + V+V+ AT+RPD+IDPAL+RPGRLD+ +Y P PD  SRL IL  +    P++ DVDL ++A+ T+ FTGADL  +   A
Sbjct:  937 LFFDEFESIAPRRGHDNTGVTDR---VVNQLLTQLDGVEGLQGVYVLAATSRPDLIDPALLRPGRLDKCVYCPPPDQVSRLEILNVLSDSLPLADDVDLQHVASVTDSFTGADLKALLYNA 1054          
BLAST of CX300926 vs. ExPASy Swiss-Prot
Match: FTSH_AQUAE (Cell division protease ftsH homolog OS=Aquifex aeolicus GN=ftsH PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 4.486e-24
Identity = 58/129 (44.96%), Postives = 74/129 (57.36%), Query Frame = 2
Query:    2 LFFDELDSIXXXXXXXXXXXXXXXXX-VMNQLLTEMDGVGAKKNVFVIGATNRPDIIDPALMRPGRLDQLIYIPMPDYESRLSILKAVLRKTPVSKDVDLSYLAAQTEKFTGADLTEICQRAAKLAIRE 385
            +F DE+D++                   +NQLL EMDG      + VI ATNRPDI+DPAL+RPGR D+ I+IP PD   R  ILK   R   ++KDVDL ++A  T  FTGADL  +   AA LA R+
Sbjct:  251 IFIDEIDAVGRARGAIPVGGGHDEREQTLNQLLVEMDGFDTSDGIIVIAATNRPDILDPALLRPGRFDRQIFIPKPDVRGRYEILKVHARNKKLAKDVDLEFVARATPGFTGADLENLLNEAALLAARK 379          
BLAST of CX300926 vs. ExPASy Swiss-Prot
Match: PSMR_PYRKO (Proteasome-activating nucleotidase OS=Pyrococcus kodakaraensis GN=pan PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 5.859e-24
Identity = 61/128 (47.66%), Postives = 76/128 (59.38%), Query Frame = 2
Query:    2 LFFDELDSIXXXXXXXXXXXXXXXXXVMNQLLTEMDGVGAKKNVFVIGATNRPDIIDPALMRPGRLDQLIYIPMPDYESRLSILKAVLRKTPVSKDVDLSYLAAQTEKFTGADLTEICQRAAKLAIRE 385
            +F DE+D+I                  + QLL EMDG   + NV VI ATNRPDI+DPAL+RPGR D+LI +P+PDY+ RL ILK   RK  + K VDL  +A  TE  +GADL  I   A   AIR+
Sbjct:  235 IFIDEIDAIGAKRMDETTGGEREVNRTLMQLLAEMDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRLIEVPLPDYQGRLEILKVHTRKMNL-KGVDLRVIAEITEGASGADLKAIATEAGMFAIRD 361          
The following BLAST results are available for this feature:
BLAST of CX300926 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 323
Match NameE-valueIdentityDescription
NVL_DICDI1.181e-2444.53Putative ribosome biogenesis ATPase nvl OS=Dictyos... [more]
PSMR_METJA1.542e-2445.31Proteasome-activating nucleotidase OS=Methanocaldo... [more]
PSMR_METAC2.014e-2443.41Proteasome-activating nucleotidase OS=Methanosarci... [more]
PSMR_PYRHO3.435e-2447.66Proteasome-activating nucleotidase OS=Pyrococcus h... [more]
PSMR_PYRAB3.435e-2447.66Proteasome-activating nucleotidase OS=Pyrococcus a... [more]
SAV_SULAC4.486e-2444.88Protein SAV OS=Sulfolobus acidocaldarius GN=sav PE... [more]
PSMR_ARCFU4.486e-2444.19Proteasome-activating nucleotidase OS=Archaeoglobu... [more]
PEX1_HUMAN4.486e-2447.11Peroxisome biogenesis factor 1 OS=Homo sapiens GN=... [more]
FTSH_AQUAE4.486e-2444.96Cell division protease ftsH homolog OS=Aquifex aeo... [more]
PSMR_PYRKO5.859e-2447.66Proteasome-activating nucleotidase OS=Pyrococcus k... [more]

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Properties
Property NameValue
Genbank descriptionC08003G07SK PhyRootSw1 Citrus sinensis cDNA clone C08003G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300926 ID=CX300926; Name=CX300926; organism=Citrus sinensis; type=EST; length=394bp
GTTGTTCTTTGATGAGTTAGATTCTATCGCTCAACAGCGTGGTGGAAGTC
AAGGAGATGGTGGAGGAGCTGGCGATCGTGTAATGAATCAGCTTCTTACT
GAAATGGACGGTGTTGGTGCCAAGAAGAATGTGTTCGTGATTGGAGCCAC
CAATAGACCTGACATCATTGACCCTGCTTTGATGAGACCTGGACGTTTAG
ATCAATTAATTTACATTCCTATGCCAGACTACGAATCAAGATTGTCAATT
TTAAAGGCTGTTTTAAGAAAGACTCCTGTGAGTAAGGACGTTGATCTTTC
CTACTTGGCTGCTCAAACCGAGAAGTTTACTGGTGCTGATTTGACTGAGA
TCTGCCAGCGTGCTGCTAAACTCGCTATTCGAGAAGATATCATG
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