CX300926

Overview
NameCX300926
Unique NameCX300926
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length394
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300926 vs. ExPASy Swiss-Prot
Match: FTSH_BUCAI (Cell division protease ftsH OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=ftsH PE=3 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 7.653e-24
Identity = 53/129 (41.09%), Postives = 74/129 (57.36%), Query Frame = 2
Query:    2 LFFDELDSIXXXXXXXXXXXXXXXXXVMNQLLTEMDGVGAKKNVFVIGATNRPDIIDPALMRPGRLDQLIYIPMPDYESRLSILKAVLRKTPVSKDVDLSYLAAQTEKFTGADLTEICQRAAKLAIRED 388
            +F DE+D++                  +NQ+L EMDG    + + +I ATNRPD++DPAL+RPGR D+ + + +PD   R  ILK  +RK P+SKDVD   +A  T  F+GADL  +   AA  A R D
Sbjct:  248 IFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFDGNEGIILIAATNRPDVLDPALLRPGRFDRQVIVALPDIRGREQILKVHMRKVPLSKDVDPMIIARGTPGFSGADLANLVNEAALFAARLD 376          
BLAST of CX300926 vs. ExPASy Swiss-Prot
Match: PSMR_PYRFU (Proteasome-activating nucleotidase OS=Pyrococcus furiosus GN=pan PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 9.995e-24
Identity = 60/128 (46.88%), Postives = 76/128 (59.38%), Query Frame = 2
Query:    2 LFFDELDSIXXXXXXXXXXXXXXXXXVMNQLLTEMDGVGAKKNVFVIGATNRPDIIDPALMRPGRLDQLIYIPMPDYESRLSILKAVLRKTPVSKDVDLSYLAAQTEKFTGADLTEICQRAAKLAIRE 385
            +F DE+D+I                  + QLL EMDG   + NV VI ATNRPDI+DPAL+RPGR D+LI +P+PD+E RL ILK   R+  + + VDL  +A  TE  +GADL  I   A   AIRE
Sbjct:  234 IFIDEIDAIGAKRLDETTGGEREVNRTLMQLLAEMDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRLIEVPLPDFEGRLEILKVHTRRMKL-RGVDLRLIAELTEGASGADLKAIATEAGMFAIRE 360          
BLAST of CX300926 vs. ExPASy Swiss-Prot
Match: PSMR_THEGJ (Proteasome-activating nucleotidase OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=pan PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.305e-23
Identity = 60/128 (46.88%), Postives = 77/128 (60.16%), Query Frame = 2
Query:    2 LFFDELDSIXXXXXXXXXXXXXXXXXVMNQLLTEMDGVGAKKNVFVIGATNRPDIIDPALMRPGRLDQLIYIPMPDYESRLSILKAVLRKTPVSKDVDLSYLAAQTEKFTGADLTEICQRAAKLAIRE 385
            +F DE+D+I                  + QLL EMDG   + NV VI ATNRPDI+DPAL+RPGR D+LI +P+PD+  RL ILK   RK  + ++VDLS +A  TE  +GADL  I   A   AIR+
Sbjct:  235 IFIDEIDAIGAKRMDETTGGEREVNRTLMQLLAEMDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRLIEVPLPDFRGRLEILKVHTRKMNL-RNVDLSIIADITEGASGADLKAIATEAGMFAIRD 361          
BLAST of CX300926 vs. ExPASy Swiss-Prot
Match: PEX1_MOUSE (Peroxisome biogenesis factor 1 OS=Mus musculus GN=Pex1 PE=1 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 1.305e-23
Identity = 57/127 (44.88%), Postives = 80/127 (62.99%), Query Frame = 2
Query:    2 LFFDELDSIXXXXXXXXXXXXXXXXXVMNQLLTEMDGVGAKKNVFVIGATNRPDIIDPALMRPGRLDQLIYIPMPDYESRLSILKAVLRKTPVSKDVDLSYLAAQTEKFTGADLTEICQRAAKLAIR 382
            LFFDE +SI                 V+NQLLT++DGV   + V+V+ AT+RPD+IDPAL+RPGRLD+ +Y P PD  SRL IL  + +   ++ DVDL ++A+ T+ FTGADL  +   A   A++
Sbjct:  938 LFFDEFESIAPRRGHDNTGVTDR---VVNQLLTQLDGVEGLQGVYVLAATSRPDLIDPALLRPGRLDKCVYCPPPDQVSRLEILTVLSKSLALADDVDLQHVASVTDSFTGADLKALLYNAQLEALQ 1061          
BLAST of CX300926 vs. ExPASy Swiss-Prot
Match: SPA5L_BOVIN (Spermatogenesis-associated protein 5-like protein 1 OS=Bos taurus GN=SPATA5L1 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.227e-23
Identity = 64/160 (40.00%), Postives = 86/160 (53.75%), Query Frame = 2
Query:    2 LFFDELDSIXXXXXXXXXXXXXXXXXVMNQLLTEMDGVGAK-------------------------------KNVFVIGATNRPDIIDPALMRPGRLDQLIYIPMPDYESRLSILKAVLRKTPVSKDVDLSYLAAQTEKFTGADLTEICQRAAKLAIRED 388
            +F DE+DSI                 V++ LL E+DGVG K                                NV V+ ATNRPD++D AL+RPGRLD++IYIP PD + RLSILK   + TP+  DV L  +AA+T  F+GADL  +C+ AA LA++E+
Sbjct:  563 VFLDEIDSILGSRSISRTECNVQDR-VLSVLLNELDGVGLKTIERRGSKSDQHGKCKQLEKNEELEFQEIFNSNVIVVAATNRPDVLDDALLRPGRLDKIIYIPPPDEKGRLSILKVCTKNTPMGPDVSLEKVAAETCFFSGADLGNLCKEAALLALQEN 721          

HSP 2 Score: 98.9821 bits (245), Expect = 7.919e-21
Identity = 52/126 (41.27%), Postives = 74/126 (58.73%), Query Frame = 2
Query:    2 LFFDELDSIXXXXXXXXXXXXXXXXXVMNQLLTEMDGVGAKKNVFVIGATNRPDIIDPALMRPGRLDQLIYIPMPDYESRLSILKAVLRKTPVSKDVDLSYLAAQTEKFTGADLTEICQRAAKLAI 379
            LF DE+D++                 V+ Q+LT +DG+G  + V V+G+TNRPD +DPAL RPGR D+ + I  P    R +IL+ +  K P+S  VDL+ LA  T  + GADLT +C+ AA  A+
Sbjct:  300 LFLDEVDALCPRRGGPHQAPESR---VVAQVLTLLDGIGEDREVVVVGSTNRPDALDPALRRPGRFDREVVIGTPTLRQRKAILQVITSKMPISGQVDLNLLAEMTVGYVGADLTALCREAAMQAL 422          
BLAST of CX300926 vs. ExPASy Swiss-Prot
Match: PSMR_UNCMA (Proteasome-activating nucleotidase OS=Uncultured methanogenic archaeon RC-I GN=pan PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.908e-23
Identity = 57/129 (44.19%), Postives = 77/129 (59.69%), Query Frame = 2
Query:    2 LFFDELDSIXXXXXXXXXXXXXXXXXVMNQLLTEMDGVGAKKNVFVIGATNRPDIIDPALMRPGRLDQLIYIPMPDYESRLSILKAVLRKTPVSKDVDLSYLAAQTEKFTGADLTEICQRAAKLAIRED 388
            +F DE+DSI                  + QLL EMDG   + NV ++ ATNRPDI+DPAL+RPGR D++I +PMP  E+R  ILK   RK  ++ DVDL  +A  T++ +GADL+ I   A   AIR +
Sbjct:  256 IFIDEIDSIGAKRLDSITSGDREVQRTLVQLLAEMDGFDPRGNVRILAATNRPDILDPALLRPGRFDRMIKVPMPTAEAREQILKIHARKMNLADDVDLRKIALITDESSGADLSAIVMEAGMFAIRNN 384          
BLAST of CX300926 vs. ExPASy Swiss-Prot
Match: FTSH_BUCAP (Cell division protease ftsH OS=Buchnera aphidicola subsp. Schizaphis graminum GN=ftsH PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.908e-23
Identity = 52/127 (40.94%), Postives = 73/127 (57.48%), Query Frame = 2
Query:    2 LFFDELDSIXXXXXXXXXXXXXXXXXVMNQLLTEMDGVGAKKNVFVIGATNRPDIIDPALMRPGRLDQLIYIPMPDYESRLSILKAVLRKTPVSKDVDLSYLAAQTEKFTGADLTEICQRAAKLAIR 382
            +F DE+D++                  +NQ+L EMDG    + V +I ATNRPD++DPAL+RPGR D+ + + +PD   R  ILK  +RK P+S+DVD   +A  T  F+GADL  +   AA  A R
Sbjct:  248 IFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFDGNEGVILIAATNRPDVLDPALLRPGRFDRQVIVALPDVRGRKQILKVHMRKVPLSEDVDPMIIARGTPGFSGADLANLVNEAALFAAR 374          
BLAST of CX300926 vs. ExPASy Swiss-Prot
Match: PSMR_METKA (Proteasome-activating nucleotidase OS=Methanopyrus kandleri GN=pan PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.798e-23
Identity = 58/129 (44.96%), Postives = 74/129 (57.36%), Query Frame = 2
Query:    2 LFFDELDSIXXXXXXXXXXXXXXXXXVMNQLLTEMDGVGAKKNVFVIGATNRPDIIDPALMRPGRLDQLIYIPMPDYESRLSILKAVLRKTPVSKDVDLSYLAAQTEKFTGADLTEICQRAAKLAIRED 388
            +F DE+D+I                  + QLL EMDG     ++ VI ATNR DI+DPAL+RPGR D+ I IP+PD E R  I K   R   +++DVDL  LA  TE  +GAD+  IC  A  +AIRED
Sbjct:  276 IFIDEIDAIGARRMRDATSGDREVQRTLTQLLAEMDGFDPLDDIKVIAATNRKDILDPALLRPGRFDRHIKIPLPDEEGRYEIFKIHTRDMNLAEDVDLQKLAKITEGASGADIKAICTEAGMMAIRED 404          
BLAST of CX300926 vs. ExPASy Swiss-Prot
Match: FTSH4_SYNY3 (Cell division protease ftsH homolog 4 OS=Synechocystis sp. (strain PCC 6803) GN=slr1604 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.798e-23
Identity = 53/130 (40.77%), Postives = 74/130 (56.92%), Query Frame = 2
Query:    2 LFFDELDSIXXXXXXXXXXXXXXXXXVMNQLLTEMDGVGAKKNVFVIGATNRPDIIDPALMRPGRLDQLIYIPMPDYESRLSILKAVLRKTPVSKDVDLSYLAAQTEKFTGADLTEICQRAAKLAIREDI 391
            +F DE+D++                  +NQLLTEMDG      + ++ ATNRPD++D ALMRPGR D+ + +  PDY  R  IL    R   +S+DVDL  +A +T  FTGADL+ +   AA LA R ++
Sbjct:  257 VFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLTEMDGFEGNTGIIIVAATNRPDVLDSALMRPGRFDRQVVVDRPDYAGRREILNVHARGKTLSQDVDLDKIARRTPGFTGADLSNLLNEAAILAARRNL 386          
BLAST of CX300926 vs. ExPASy Swiss-Prot
Match: PSMR_SULSO (Proteasome-activating nucleotidase OS=Sulfolobus solfataricus GN=pan PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 8.461e-23
Identity = 51/128 (39.84%), Postives = 76/128 (59.38%), Query Frame = 2
Query:    2 LFFDELDSIXXXXXXXXXXXXXXXXXVMNQLLTEMDGVGAKKNVFVIGATNRPDIIDPALMRPGRLDQLIYIPMPDYESRLSILKAVLRKTPVSKDVDLSYLAAQTEKFTGADLTEICQRAAKLAIRE 385
            +F DE+D+I                  + QLL E+DG     NV +I ATNR DI+DPAL+RPGR D++I +P+PD++ R  I    L+K  +  +++L  L+  TE F+GAD+  +C  AA +AIR+
Sbjct:  231 IFIDEIDAIGAKRIDIGTSGEREIQRTLMQLLAELDGFDPLDNVKIIAATNRIDILDPALLRPGRFDRIIEVPLPDFKGRTEIFNIYLKKMKIEDNINLELLSQLTEGFSGADIKNVCVEAAYMAIRD 358          
The following BLAST results are available for this feature:
BLAST of CX300926 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 323
Match NameE-valueIdentityDescription
FTSH_BUCAI7.653e-2441.09Cell division protease ftsH OS=Buchnera aphidicola... [more]
PSMR_PYRFU9.995e-2446.88Proteasome-activating nucleotidase OS=Pyrococcus f... [more]
PSMR_THEGJ1.305e-2346.88Proteasome-activating nucleotidase OS=Thermococcus... [more]
PEX1_MOUSE1.305e-2344.88Peroxisome biogenesis factor 1 OS=Mus musculus GN=... [more]
SPA5L_BOVIN2.227e-2340.00Spermatogenesis-associated protein 5-like protein ... [more]
PSMR_UNCMA2.908e-2344.19Proteasome-activating nucleotidase OS=Uncultured m... [more]
FTSH_BUCAP2.908e-2340.94Cell division protease ftsH OS=Buchnera aphidicola... [more]
PSMR_METKA3.798e-2344.96Proteasome-activating nucleotidase OS=Methanopyrus... [more]
FTSH4_SYNY33.798e-2340.77Cell division protease ftsH homolog 4 OS=Synechocy... [more]
PSMR_SULSO8.461e-2339.84Proteasome-activating nucleotidase OS=Sulfolobus s... [more]

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Properties
Property NameValue
Genbank descriptionC08003G07SK PhyRootSw1 Citrus sinensis cDNA clone C08003G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300926 ID=CX300926; Name=CX300926; organism=Citrus sinensis; type=EST; length=394bp
GTTGTTCTTTGATGAGTTAGATTCTATCGCTCAACAGCGTGGTGGAAGTC
AAGGAGATGGTGGAGGAGCTGGCGATCGTGTAATGAATCAGCTTCTTACT
GAAATGGACGGTGTTGGTGCCAAGAAGAATGTGTTCGTGATTGGAGCCAC
CAATAGACCTGACATCATTGACCCTGCTTTGATGAGACCTGGACGTTTAG
ATCAATTAATTTACATTCCTATGCCAGACTACGAATCAAGATTGTCAATT
TTAAAGGCTGTTTTAAGAAAGACTCCTGTGAGTAAGGACGTTGATCTTTC
CTACTTGGCTGCTCAAACCGAGAAGTTTACTGGTGCTGATTTGACTGAGA
TCTGCCAGCGTGCTGCTAAACTCGCTATTCGAGAAGATATCATG
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