CX300926

Overview
NameCX300926
Unique NameCX300926
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length394
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300926 vs. ExPASy Swiss-Prot
Match: CDCH_HALSA (Protein cdcH OS=Halobacterium salinarium GN=cdcH PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.105e-22
Identity = 58/129 (44.96%), Postives = 78/129 (60.47%), Query Frame = 2
Query:    2 LFFDELDSIXXXXXXXXXXXXXXXXXVMNQLLTEMDGVGAKKNVFVIGATNRPDIIDPALMRPGRLDQLIYIPMPDYESRLSILKAVLRKTPVSKDVDLSYLAAQTEKFTGADLTEICQRAAKLAIRED 388
            +FFDELDS+                 V+NQLLTE+DG+   + V VI ATNRPDIIDPAL+R GR D+L+ +  P  E R  ILK   + TP++ DV L  LA + + + G+DL  I + AA  A+R+D
Sbjct:  559 IFFDELDSLAPGRGQTGGNNVSER--VVNQLLTELDGLEEMEEVMVIAATNRPDIIDPALIRSGRFDRLVQVGQPGIEGREQILKIHTQDTPLAADVSLRELAERADGYVGSDLANIAREAAIEALRDD 685          

HSP 2 Score: 93.9745 bits (232), Expect = 2.547e-19
Identity = 58/127 (45.67%), Postives = 71/127 (55.91%), Query Frame = 2
Query:    2 LFFDELDSIXXXXXXXXXXXXXXXXXVMNQLLTEMDGVGAKKNVFVIGATNRPDIIDPALMRPGRLDQLIYIPMPDYESRLSILKAVLRKTPVSKDVDLSYLAAQTEKFTGADLTEICQRAAKLAIR 382
            +F DELDSI                 V+ QLLT MDG+  +  V VI ATNR D +DPAL RPGR D+ I I +PD   R  ILK   R  P+S DV+LS LA  T  F GAD+  + + AA  A+R
Sbjct:  286 IFIDELDSIAPKREDVTGEVERR---VVAQLLTMMDGLEGRGQVIVIAATNRVDAVDPALRRPGRFDREIEIGVPDEIGREEILKIHTRGMPLSDDVNLSTLADDTHGFVGADIESLSKEAAMRALR 409          
BLAST of CX300926 vs. ExPASy Swiss-Prot
Match: PEX1_PICPA (Peroxisome biosynthesis protein PAS1 OS=Pichia pastoris GN=PEX1 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.443e-22
Identity = 57/130 (43.85%), Postives = 78/130 (60.00%), Query Frame = 2
Query:    2 LFFDELDSIXXXXXXXXXXXXXXXXXVMNQLLTEMDGVGAKKNVFVIGATNRPDIIDPALMRPGRLDQLIYIPMPDYESRLSILKAVLRKTPVSKDVDLSYLAAQTEKFTGADLTEICQRAAKLAIREDI 391
            LFFDE DSI                 V+NQ+LT+MDG      V+V+ AT+RPD+ID AL+RPGRLD+ +   MPD++ RL IL++V R   VSK V+LS +A +   F+GADL  +   A   A+ E +
Sbjct:  896 LFFDEFDSIAPKRGHDSTGVTDR---VVNQMLTQMDGAEGLDGVYVLAATSRPDLIDSALLRPGRLDKSVICDMPDFDDRLDILQSVTRNMNVSKSVNLSSVAGECSGFSGADLQALAYNAYLKAVHEKL 1022          
BLAST of CX300926 vs. ExPASy Swiss-Prot
Match: NVL_MOUSE (Nuclear valosin-containing protein-like OS=Mus musculus GN=Nvl PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.443e-22
Identity = 55/135 (40.74%), Postives = 88/135 (65.19%), Query Frame = 2
Query:    2 LFFDELDSIXXXXXXXXXXXXXXXXXVMNQLLTEMDGVGAKKNVFVIGATNRPDIIDPALMRPGRLDQLIYIPMPDYESRLSILKAVLR---KTPVSKDVDLSYLA--AQTEKFTGADLTEICQRAAKLAIREDI 391
            +FFDE+D++                 V+NQLLTEMDG+  ++ VF++ ATNRPDIIDPA++RPGRLD+ +++ +P    R++ILK + +   K P+ +DV+L  +A   +   +TGADLT + + A+  A+R++I
Sbjct:  677 IFFDEVDALCPRRSDRETGASVR---VVNQLLTEMDGLETRQQVFILAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRVAILKTITKNGTKPPLDEDVNLETIANDLRCNCYTGADLTALVREASLCALRQEI 808          

HSP 2 Score: 82.4185 bits (202), Expect = 7.670e-16
Identity = 51/134 (38.06%), Postives = 72/134 (53.73%), Query Frame = 2
Query:    2 LFFDELDSIXXXXXXXXXXXXXXXXXVMNQLLTEMD---GVGAKKNVFVIGATNRPDIIDPALMRPGRLDQLIYIPMPDYESRLSILKAVLRKTPVSKDVDLSYLAAQTEKFTGADLTEICQRAAKLAIREDIM 394
            +F DE+D+I                 ++ QLLT MD    V A   V VIGATNRPD +DPAL R GR D+ + + +PD  +R  IL+ + RK  + +  +  +LA  T  F GADL  +C+ AA  A+   +M
Sbjct:  360 VFIDEIDAITPKREVASKDMERR---IVAQLLTCMDDLNNVAATARVLVIGATNRPDSLDPALRRAGRFDREVCLGIPDEAARERILQTLCRKLRLPETFNFCHLAHLTPGFVGADLMALCREAAMCAVNRVLM 490          
BLAST of CX300926 vs. ExPASy Swiss-Prot
Match: FTSH_SHIFL (Cell division protease ftsH OS=Shigella flexneri GN=ftsH PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.443e-22
Identity = 49/127 (38.58%), Postives = 73/127 (57.48%), Query Frame = 2
Query:    2 LFFDELDSIXXXXXXXXXXXXXXXXXVMNQLLTEMDGVGAKKNVFVIGATNRPDIIDPALMRPGRLDQLIYIPMPDYESRLSILKAVLRKTPVSKDVDLSYLAAQTEKFTGADLTEICQRAAKLAIR 382
            +F DE+D++                  +NQ+L EMDG    + + VI ATNRPD++DPAL+RPGR D+ + + +PD   R  ILK  +R+ P++ D+D + +A  T  F+GADL  +   AA  A R
Sbjct:  248 IFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAAR 374          
BLAST of CX300926 vs. ExPASy Swiss-Prot
Match: FTSH_SALTY (Cell division protease ftsH OS=Salmonella typhimurium GN=ftsH PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.443e-22
Identity = 49/127 (38.58%), Postives = 73/127 (57.48%), Query Frame = 2
Query:    2 LFFDELDSIXXXXXXXXXXXXXXXXXVMNQLLTEMDGVGAKKNVFVIGATNRPDIIDPALMRPGRLDQLIYIPMPDYESRLSILKAVLRKTPVSKDVDLSYLAAQTEKFTGADLTEICQRAAKLAIR 382
            +F DE+D++                  +NQ+L EMDG    + + VI ATNRPD++DPAL+RPGR D+ + + +PD   R  ILK  +R+ P++ D+D + +A  T  F+GADL  +   AA  A R
Sbjct:  248 IFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLATDIDAAIIARGTPGFSGADLANLVNEAALFAAR 374          
BLAST of CX300926 vs. ExPASy Swiss-Prot
Match: FTSH_SALTI (Cell division protease ftsH OS=Salmonella typhi GN=ftsH PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.443e-22
Identity = 49/127 (38.58%), Postives = 73/127 (57.48%), Query Frame = 2
Query:    2 LFFDELDSIXXXXXXXXXXXXXXXXXVMNQLLTEMDGVGAKKNVFVIGATNRPDIIDPALMRPGRLDQLIYIPMPDYESRLSILKAVLRKTPVSKDVDLSYLAAQTEKFTGADLTEICQRAAKLAIR 382
            +F DE+D++                  +NQ+L EMDG    + + VI ATNRPD++DPAL+RPGR D+ + + +PD   R  ILK  +R+ P++ D+D + +A  T  F+GADL  +   AA  A R
Sbjct:  248 IFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLATDIDAAIIARGTPGFSGADLANLVNEAALFAAR 374          
BLAST of CX300926 vs. ExPASy Swiss-Prot
Match: FTSH_ECOLI (Cell division protease ftsH OS=Escherichia coli (strain K12) GN=ftsH PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.443e-22
Identity = 49/127 (38.58%), Postives = 73/127 (57.48%), Query Frame = 2
Query:    2 LFFDELDSIXXXXXXXXXXXXXXXXXVMNQLLTEMDGVGAKKNVFVIGATNRPDIIDPALMRPGRLDQLIYIPMPDYESRLSILKAVLRKTPVSKDVDLSYLAAQTEKFTGADLTEICQRAAKLAIR 382
            +F DE+D++                  +NQ+L EMDG    + + VI ATNRPD++DPAL+RPGR D+ + + +PD   R  ILK  +R+ P++ D+D + +A  T  F+GADL  +   AA  A R
Sbjct:  248 IFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAAR 374          
BLAST of CX300926 vs. ExPASy Swiss-Prot
Match: FTSH_ECO57 (Cell division protease ftsH OS=Escherichia coli O157:H7 GN=ftsH PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.443e-22
Identity = 49/127 (38.58%), Postives = 73/127 (57.48%), Query Frame = 2
Query:    2 LFFDELDSIXXXXXXXXXXXXXXXXXVMNQLLTEMDGVGAKKNVFVIGATNRPDIIDPALMRPGRLDQLIYIPMPDYESRLSILKAVLRKTPVSKDVDLSYLAAQTEKFTGADLTEICQRAAKLAIR 382
            +F DE+D++                  +NQ+L EMDG    + + VI ATNRPD++DPAL+RPGR D+ + + +PD   R  ILK  +R+ P++ D+D + +A  T  F+GADL  +   AA  A R
Sbjct:  248 IFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAAR 374          
BLAST of CX300926 vs. ExPASy Swiss-Prot
Match: FTSH_BACPF (Cell division protease ftsH homolog OS=Bacillus pseudofirmus GN=ftsH PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.443e-22
Identity = 52/129 (40.31%), Postives = 73/129 (56.59%), Query Frame = 2
Query:    2 LFFDELDSIXXXXXXXXXXXXXXXXXVMNQLLTEMDGVGAKKNVFVIGATNRPDIIDPALMRPGRLDQLIYIPMPDYESRLSILKAVLRKTPVSKDVDLSYLAAQTEKFTGADLTEICQRAAKLAIRED 388
            +F DE+D++                  +NQLL EMDG  A + + +I ATNR DI+DPAL+RPGR D+ I +  PD   R  +LK   R  P++ DV+L  +A +T  F+GADL  +   AA +A R D
Sbjct:  262 IFIDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFSANEGIIIIAATNRADILDPALLRPGRFDRQIQVNRPDVNGREEVLKVHARNKPLNDDVNLKTIATRTPGFSGADLENLLNEAALVAARHD 390          
BLAST of CX300926 vs. ExPASy Swiss-Prot
Match: AFG31_MOUSE (AFG3-like protein 1 OS=Mus musculus GN=Afg3l1 PE=2 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 1.443e-22
Identity = 59/131 (45.04%), Postives = 73/131 (55.73%), Query Frame = 2
Query:    2 LFFDELDSIXXXXXXXXXXXXXXXXXVMNQLLTEMDGVGAKKNVFVIGATNRPDIIDPALMRPGRLDQLIYIPMPDYESRLSILKAVLRKT----PVSKDVDLSYLAAQTEKFTGADLTEICQRAAKLAIR 382
            LF DE+D+I                  +NQ+L EMDG  +  NV V+  TNRPDI+DPAL RPGR D+ IYI  PD + R SI K  LR       +SKD     LAA T  FTGAD++ +C  AA +A R
Sbjct:  396 LFIDEIDAIGRKRGRGHLGGQSEQENTLNQMLVEMDGFNSSTNVVVLAGTNRPDILDPALTRPGRFDRQIYIGPPDIKGRSSIFKVHLRPLKLDGSLSKDALSRKLAALTPGFTGADISNVCNEAALIAAR 526          
The following BLAST results are available for this feature:
BLAST of CX300926 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 323
Match NameE-valueIdentityDescription
CDCH_HALSA1.105e-2244.96Protein cdcH OS=Halobacterium salinarium GN=cdcH P... [more]
PEX1_PICPA1.443e-2243.85Peroxisome biosynthesis protein PAS1 OS=Pichia pas... [more]
NVL_MOUSE1.443e-2240.74Nuclear valosin-containing protein-like OS=Mus mus... [more]
FTSH_SHIFL1.443e-2238.58Cell division protease ftsH OS=Shigella flexneri G... [more]
FTSH_SALTY1.443e-2238.58Cell division protease ftsH OS=Salmonella typhimur... [more]
FTSH_SALTI1.443e-2238.58Cell division protease ftsH OS=Salmonella typhi GN... [more]
FTSH_ECOLI1.443e-2238.58Cell division protease ftsH OS=Escherichia coli (s... [more]
FTSH_ECO571.443e-2238.58Cell division protease ftsH OS=Escherichia coli O1... [more]
FTSH_BACPF1.443e-2240.31Cell division protease ftsH homolog OS=Bacillus ps... [more]
AFG31_MOUSE1.443e-2245.04AFG3-like protein 1 OS=Mus musculus GN=Afg3l1 PE=2... [more]

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Properties
Property NameValue
Genbank descriptionC08003G07SK PhyRootSw1 Citrus sinensis cDNA clone C08003G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300926 ID=CX300926; Name=CX300926; organism=Citrus sinensis; type=EST; length=394bp
GTTGTTCTTTGATGAGTTAGATTCTATCGCTCAACAGCGTGGTGGAAGTC
AAGGAGATGGTGGAGGAGCTGGCGATCGTGTAATGAATCAGCTTCTTACT
GAAATGGACGGTGTTGGTGCCAAGAAGAATGTGTTCGTGATTGGAGCCAC
CAATAGACCTGACATCATTGACCCTGCTTTGATGAGACCTGGACGTTTAG
ATCAATTAATTTACATTCCTATGCCAGACTACGAATCAAGATTGTCAATT
TTAAAGGCTGTTTTAAGAAAGACTCCTGTGAGTAAGGACGTTGATCTTTC
CTACTTGGCTGCTCAAACCGAGAAGTTTACTGGTGCTGATTTGACTGAGA
TCTGCCAGCGTGCTGCTAAACTCGCTATTCGAGAAGATATCATG
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