CX300926

Overview
NameCX300926
Unique NameCX300926
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length394
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300926 vs. ExPASy Swiss-Prot
Match: PSMR_THEON (Proteasome-activating nucleotidase OS=Thermococcus onnurineus (strain NA1) GN=pan PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.885e-22
Identity = 57/128 (44.53%), Postives = 76/128 (59.38%), Query Frame = 2
Query:    2 LFFDELDSIXXXXXXXXXXXXXXXXXVMNQLLTEMDGVGAKKNVFVIGATNRPDIIDPALMRPGRLDQLIYIPMPDYESRLSILKAVLRKTPVSKDVDLSYLAAQTEKFTGADLTEICQRAAKLAIRE 385
            +F DE+D+I                  + QLL EMDG     NV +I ATNRPDI+DPAL+RPGR D+LI +P+P+++SRL ILK   ++  + K VDL  +A  TE  +GADL  I   A   AIR+
Sbjct:  236 IFIDEIDAIGAKRMDETTGGEREVNRTLMQLLAEMDGFDPSGNVKIIAATNRPDILDPALLRPGRFDRLIEVPLPNFKSRLEILKIHTKRMNL-KGVDLRIIAEMTEGASGADLKAITMEAGMFAIRD 362          
BLAST of CX300926 vs. ExPASy Swiss-Prot
Match: PSMR_SULIY (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=pan PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.885e-22
Identity = 51/128 (39.84%), Postives = 75/128 (58.59%), Query Frame = 2
Query:    2 LFFDELDSIXXXXXXXXXXXXXXXXXVMNQLLTEMDGVGAKKNVFVIGATNRPDIIDPALMRPGRLDQLIYIPMPDYESRLSILKAVLRKTPVSKDVDLSYLAAQTEKFTGADLTEICQRAAKLAIRE 385
            +F DE+D+I                  + QLL E+DG     NV +I ATNR DI+DPAL+RPGR D++I +P+PD+  R  I    L+K  V  +++L  L+  +E F+GAD+  +C  AA +AIR+
Sbjct:  231 IFIDEIDAIGAKRIDIGTSGEREIQRTLMQLLAELDGFNPLDNVKIIAATNRIDILDPALLRPGRFDRIIEVPLPDFRGRTEIFNIYLKKMKVEDNINLELLSQLSEGFSGADIKNVCVEAAYMAIRD 358          
BLAST of CX300926 vs. ExPASy Swiss-Prot
Match: PSMR_SULIN (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=pan PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.885e-22
Identity = 51/128 (39.84%), Postives = 75/128 (58.59%), Query Frame = 2
Query:    2 LFFDELDSIXXXXXXXXXXXXXXXXXVMNQLLTEMDGVGAKKNVFVIGATNRPDIIDPALMRPGRLDQLIYIPMPDYESRLSILKAVLRKTPVSKDVDLSYLAAQTEKFTGADLTEICQRAAKLAIRE 385
            +F DE+D+I                  + QLL E+DG     NV +I ATNR DI+DPAL+RPGR D++I +P+PD+  R  I    L+K  V  +++L  L+  +E F+GAD+  +C  AA +AIR+
Sbjct:  231 IFIDEIDAIGAKRIDIGTSGEREIQRTLMQLLAELDGFNPLDNVKIIAATNRIDILDPALLRPGRFDRIIEVPLPDFRGRTEIFNIYLKKMKVEDNINLELLSQLSEGFSGADIKNVCVEAAYMAIRD 358          
BLAST of CX300926 vs. ExPASy Swiss-Prot
Match: PSMR_SULIM (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=pan PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.885e-22
Identity = 51/128 (39.84%), Postives = 75/128 (58.59%), Query Frame = 2
Query:    2 LFFDELDSIXXXXXXXXXXXXXXXXXVMNQLLTEMDGVGAKKNVFVIGATNRPDIIDPALMRPGRLDQLIYIPMPDYESRLSILKAVLRKTPVSKDVDLSYLAAQTEKFTGADLTEICQRAAKLAIRE 385
            +F DE+D+I                  + QLL E+DG     NV +I ATNR DI+DPAL+RPGR D++I +P+PD+  R  I    L+K  V  +++L  L+  +E F+GAD+  +C  AA +AIR+
Sbjct:  231 IFIDEIDAIGAKRIDIGTSGEREIQRTLMQLLAELDGFNPLDNVKIIAATNRIDILDPALLRPGRFDRIIEVPLPDFRGRTEIFNIYLKKMKVEDNINLELLSQLSEGFSGADIKNVCVEAAYMAIRD 358          
BLAST of CX300926 vs. ExPASy Swiss-Prot
Match: PSMR_SULIL (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=pan PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.885e-22
Identity = 51/128 (39.84%), Postives = 75/128 (58.59%), Query Frame = 2
Query:    2 LFFDELDSIXXXXXXXXXXXXXXXXXVMNQLLTEMDGVGAKKNVFVIGATNRPDIIDPALMRPGRLDQLIYIPMPDYESRLSILKAVLRKTPVSKDVDLSYLAAQTEKFTGADLTEICQRAAKLAIRE 385
            +F DE+D+I                  + QLL E+DG     NV +I ATNR DI+DPAL+RPGR D++I +P+PD+  R  I    L+K  V  +++L  L+  +E F+GAD+  +C  AA +AIR+
Sbjct:  231 IFIDEIDAIGAKRIDIGTSGEREIQRTLMQLLAELDGFNPLDNVKIIAATNRIDILDPALLRPGRFDRIIEVPLPDFRGRTEIFNIYLKKMKVEDNINLELLSQLSEGFSGADIKNVCVEAAYMAIRD 358          
BLAST of CX300926 vs. ExPASy Swiss-Prot
Match: PSMR_SULIK (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=pan PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.885e-22
Identity = 51/128 (39.84%), Postives = 75/128 (58.59%), Query Frame = 2
Query:    2 LFFDELDSIXXXXXXXXXXXXXXXXXVMNQLLTEMDGVGAKKNVFVIGATNRPDIIDPALMRPGRLDQLIYIPMPDYESRLSILKAVLRKTPVSKDVDLSYLAAQTEKFTGADLTEICQRAAKLAIRE 385
            +F DE+D+I                  + QLL E+DG     NV +I ATNR DI+DPAL+RPGR D++I +P+PD+  R  I    L+K  V  +++L  L+  +E F+GAD+  +C  AA +AIR+
Sbjct:  231 IFIDEIDAIGAKRIDIGTSGEREIQRTLMQLLAELDGFNPLDNVKIIAATNRIDILDPALLRPGRFDRIIEVPLPDFRGRTEIFNIYLKKMKVEDNINLELLSQLSEGFSGADIKNVCVEAAYMAIRD 358          
BLAST of CX300926 vs. ExPASy Swiss-Prot
Match: PSMR_SULIA (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain M.16.27) GN=pan PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.885e-22
Identity = 51/128 (39.84%), Postives = 75/128 (58.59%), Query Frame = 2
Query:    2 LFFDELDSIXXXXXXXXXXXXXXXXXVMNQLLTEMDGVGAKKNVFVIGATNRPDIIDPALMRPGRLDQLIYIPMPDYESRLSILKAVLRKTPVSKDVDLSYLAAQTEKFTGADLTEICQRAAKLAIRE 385
            +F DE+D+I                  + QLL E+DG     NV +I ATNR DI+DPAL+RPGR D++I +P+PD+  R  I    L+K  V  +++L  L+  +E F+GAD+  +C  AA +AIR+
Sbjct:  231 IFIDEIDAIGAKRIDIGTSGEREIQRTLMQLLAELDGFNPLDNVKIIAATNRIDILDPALLRPGRFDRIIEVPLPDFRGRTEIFNIYLKKMKVEDNINLELLSQLSEGFSGADIKNVCVEAAYMAIRD 358          
BLAST of CX300926 vs. ExPASy Swiss-Prot
Match: NVL_HUMAN (Nuclear valosin-containing protein-like OS=Homo sapiens GN=NVL PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.885e-22
Identity = 55/135 (40.74%), Postives = 89/135 (65.93%), Query Frame = 2
Query:    2 LFFDELDSIXXXXXXXXXXXXXXXXXVMNQLLTEMDGVGAKKNVFVIGATNRPDIIDPALMRPGRLDQLIYIPMPDYESRLSILKAVLR---KTPVSKDVDLSYLAA--QTEKFTGADLTEICQRAAKLAIREDI 391
            +FFDE+D++                 V+NQLLTEMDG+ A++ VF++ ATNRPDIIDPA++RPGRLD+ +++ +P    RL+ILK + +   K P+  DV+L  +A   + + +TGADL+ + + A+  A+R+++
Sbjct:  678 IFFDEVDALCPRRSDRETGASVR---VVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEM 809          

HSP 2 Score: 85.8853 bits (211), Expect = 6.937e-17
Identity = 54/134 (40.30%), Postives = 72/134 (53.73%), Query Frame = 2
Query:    2 LFFDELDSIXXXXXXXXXXXXXXXXXVMNQLLTEMD---GVGAKKNVFVIGATNRPDIIDPALMRPGRLDQLIYIPMPDYESRLSILKAVLRKTPVSKDVDLSYLAAQTEKFTGADLTEICQRAAKLAIREDIM 394
            +F DE+D+I                 ++ QLLT MD    V A   V VIGATNRPD +DPAL R GR D+ I + +PD  SR  IL+ + RK  + +  D  +LA  T  F GADL  +C+ AA  A+   +M
Sbjct:  361 IFIDEIDAITPKREVASKDMERR---IVAQLLTCMDDLNNVAATARVLVIGATNRPDSLDPALRRAGRFDREICLGIPDEASRERILQTLCRKLRLPQAFDFCHLAHLTPGFVGADLMALCREAAMCAVNRVLM 491          
BLAST of CX300926 vs. ExPASy Swiss-Prot
Match: FTSH1_ORYSJ (Cell division protease ftsH homolog 1, chloroplastic OS=Oryza sativa subsp. japonica GN=FTSH1 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.885e-22
Identity = 53/130 (40.77%), Postives = 73/130 (56.15%), Query Frame = 2
Query:    2 LFFDELDSIXXXXXXXXXXXXXXXXXVMNQLLTEMDGVGAKKNVFVIGATNRPDIIDPALMRPGRLDQLIYIPMPDYESRLSILKAVLRKTPVSKDVDLSYLAAQTEKFTGADLTEICQRAAKLAIREDI 391
            +F DE+D++                  +NQLLTEMDG      V V+ ATNRPD++D AL+RPGR D+ + +  PD   R+ IL+   R   ++KDVD   +A +T  FTGADL  +   AA LA R D+
Sbjct:  328 VFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFAGNSGVIVLAATNRPDVLDAALLRPGRFDRQVTVDRPDVAGRVKILEVHSRGKALAKDVDFEKIARRTPGFTGADLQNLMNEAAILAARRDL 457          
BLAST of CX300926 vs. ExPASy Swiss-Prot
Match: YB7A_SCHPO (Uncharacterized AAA domain-containing protein C16E9.10c OS=Schizosaccharomyces pombe GN=SPBC16E9.10c PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.462e-22
Identity = 54/132 (40.91%), Postives = 82/132 (62.12%), Query Frame = 2
Query:    2 LFFDELDSIXXXXXXXXXXXXXXXXXVMNQLLTEMDGVGAKKNVFVIGATNRPDIIDPALMRPGRLDQLIYIPMPDYESRLSILKAVLRKTPVSKDVDLSYLA--AQTEKFTGADLTEICQRAAKLAIREDI 391
            +FFDELD++                 V+N LLTE+DG+  +  V+VI ATNRPDIIDPA++RPGRLD+ + + +PD   R+ ILK + ++TP+ ++V+L  L    +   F+GADL  + + AA  A+R  +
Sbjct:  589 IFFDELDAMVPRRDDSLSEASSR---VVNTLLTELDGLSDRSGVYVIAATNRPDIIDPAMLRPGRLDKTLLVDLPDAHERVEILKTLTKQTPLHEEVNLDVLGRDERCSNFSGADLAALVREAAVTALRSAV 717          

HSP 2 Score: 73.1738 bits (178), Expect = 4.653e-13
Identity = 46/131 (35.11%), Postives = 68/131 (51.91%), Query Frame = 2
Query:    2 LFFDELDSIXXXXXXXXXXXXXXXXXVMNQLLTEMDGVGAKKN----VFVIGATNRPDIIDPALMRPGRLDQLIYIPMPDYESRLSILKAVLRKTPVSKDVDLSYLAAQTEKFTGADLTEICQRAAKLAIR 382
            +F DE+D++                 ++ Q LT MD +  +K     V VIGATNRPD +D AL R GR D+ I + +P  ++R  IL+ + +   +S D D   LA QT  + GADL  +   A  +AI+
Sbjct:  271 MFIDEIDAVTPKRESAQREMERR---IVAQFLTCMDELSFEKTDGKPVLVIGATNRPDSLDSALRRAGRFDREICLTVPSQDAREKILRTMAKGLKLSGDFDFRQLAKQTPGYVGADLKALTAAAGIIAIK 398          
The following BLAST results are available for this feature:
BLAST of CX300926 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 323
Match NameE-valueIdentityDescription
PSMR_THEON1.885e-2244.53Proteasome-activating nucleotidase OS=Thermococcus... [more]
PSMR_SULIY1.885e-2239.84Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_SULIN1.885e-2239.84Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_SULIM1.885e-2239.84Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_SULIL1.885e-2239.84Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_SULIK1.885e-2239.84Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_SULIA1.885e-2239.84Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
NVL_HUMAN1.885e-2240.74Nuclear valosin-containing protein-like OS=Homo sa... [more]
FTSH1_ORYSJ1.885e-2240.77Cell division protease ftsH homolog 1, chloroplast... [more]
YB7A_SCHPO2.462e-2240.91Uncharacterized AAA domain-containing protein C16E... [more]

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Properties
Property NameValue
Genbank descriptionC08003G07SK PhyRootSw1 Citrus sinensis cDNA clone C08003G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300926 ID=CX300926; Name=CX300926; organism=Citrus sinensis; type=EST; length=394bp
GTTGTTCTTTGATGAGTTAGATTCTATCGCTCAACAGCGTGGTGGAAGTC
AAGGAGATGGTGGAGGAGCTGGCGATCGTGTAATGAATCAGCTTCTTACT
GAAATGGACGGTGTTGGTGCCAAGAAGAATGTGTTCGTGATTGGAGCCAC
CAATAGACCTGACATCATTGACCCTGCTTTGATGAGACCTGGACGTTTAG
ATCAATTAATTTACATTCCTATGCCAGACTACGAATCAAGATTGTCAATT
TTAAAGGCTGTTTTAAGAAAGACTCCTGTGAGTAAGGACGTTGATCTTTC
CTACTTGGCTGCTCAAACCGAGAAGTTTACTGGTGCTGATTTGACTGAGA
TCTGCCAGCGTGCTGCTAAACTCGCTATTCGAGAAGATATCATG
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