CX300926

Overview
NameCX300926
Unique NameCX300926
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length394
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300926 vs. ExPASy Swiss-Prot
Match: FTSH_MYCBO (Cell division protease ftsH homolog OS=Mycobacterium bovis GN=ftsH PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.484e-22
Identity = 53/129 (41.09%), Postives = 73/129 (56.59%), Query Frame = 2
Query:    2 LFFDELDSIXXXXXXXXXXXXXXXXXVMNQLLTEMDGVGAKKNVFVIGATNRPDIIDPALMRPGRLDQLIYIPMPDYESRLSILKAVLRKTPVSKDVDLSYLAAQTEKFTGADLTEICQRAAKLAIRED 388
            +F DE+D++                  +NQLL EMDG G +  V +I ATNRPDI+DPAL+RPGR D+ I +  PD   R ++L+   +  P++ D DL  LA +T   TGADL  +   AA L  RE+
Sbjct:  259 IFVDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFGDRAGVILIAATNRPDILDPALLRPGRFDRQIPVSNPDLAGRRAVLRVHSKGKPMAADADLDGLAKRTVGMTGADLANVINEAALLTAREN 387          
BLAST of CX300926 vs. ExPASy Swiss-Prot
Match: FTSH_MEDSA (Cell division protease ftsH homolog, chloroplastic OS=Medicago sativa GN=FTSH PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.484e-22
Identity = 52/130 (40.00%), Postives = 72/130 (55.38%), Query Frame = 2
Query:    2 LFFDELDSIXXXXXXXXXXXXXXXXXVMNQLLTEMDGVGAKKNVFVIGATNRPDIIDPALMRPGRLDQLIYIPMPDYESRLSILKAVLRKTPVSKDVDLSYLAAQTEKFTGADLTEICQRAAKLAIREDI 391
            +F DE+D++                  +NQLLTEMDG      V V+ ATNRPD++D AL+RPGR D+ + +  PD   R+ IL+   R   ++KDVD   +A +T  FTG DL  +   AA LA R D+
Sbjct:  349 VFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFDKIARRTPGFTGVDLQNLMNEAAILAARRDL 478          
BLAST of CX300926 vs. ExPASy Swiss-Prot
Match: FTSH_CAPAN (Cell division protease ftsH homolog, chloroplastic (Fragment) OS=Capsicum annuum GN=FTSH PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.484e-22
Identity = 52/130 (40.00%), Postives = 73/130 (56.15%), Query Frame = 2
Query:    2 LFFDELDSIXXXXXXXXXXXXXXXXXVMNQLLTEMDGVGAKKNVFVIGATNRPDIIDPALMRPGRLDQLIYIPMPDYESRLSILKAVLRKTPVSKDVDLSYLAAQTEKFTGADLTEICQRAAKLAIREDI 391
            +F DE+D++                  +NQLLTEMDG      V V+ ATNRPD++D AL+RPG+ D+ + +  PD   R+ IL+   R   ++KDVD   +A +T  FTGADL  +   AA LA R D+
Sbjct:  326 VFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGKFDRQVTVDRPDVAGRVRILQVHSRGKALAKDVDFDKIARRTPGFTGADLQNLMNEAAILAARRDL 455          
BLAST of CX300926 vs. ExPASy Swiss-Prot
Match: RIX7_YEAST (Ribosome biogenesis ATPase RIX7 OS=Saccharomyces cerevisiae GN=RIX7 PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.163e-22
Identity = 53/131 (40.46%), Postives = 84/131 (64.12%), Query Frame = 2
Query:    2 LFFDELDSIXXXXXXXXXXXXXXXXXVMNQLLTEMDGVGAKKNVFVIGATNRPDIIDPALMRPGRLDQLIYIPMPDYESRLSILKAVLRK--TPVSKDVDLSYLA--AQTEKFTGADLTEICQRAAKLAIR 382
            +FFDELD++                 V+N LLTE+DG+  ++ +FVIGATNRPD+IDPA++RPGRLD+ ++I +P+ E +L I+K + +   TP+S DVD   +    +   F+GADL  + + ++ LA++
Sbjct:  630 IFFDELDALVPRRDTSLSESSSR---VVNTLLTELDGLNDRRGIFVIGATNRPDMIDPAMLRPGRLDKSLFIELPNTEEKLDIIKTLTKSHGTPLSSDVDFEEIIRNEKCNNFSGADLAALVRESSVLALK 757          

HSP 2 Score: 75.0998 bits (183), Expect = 1.225e-13
Identity = 49/131 (37.40%), Postives = 68/131 (51.91%), Query Frame = 2
Query:    2 LFFDELDSIXXXXXXXXXXXXXXXXXVMNQLLTEMDGVGAKKN----VFVIGATNRPDIIDPALMRPGRLDQLIYIPMPDYESRLSILKAVLRKTPVSKDVDLSYLAAQTEKFTGADLTEICQRAAKLAIR 382
            +FFDE+D+I                 ++ QLLT MD +  +K     V +IGATNRPD +D AL R GR D+ I + +P+  SRL ILK +     +   +D + LA  T  F GADL  +   A   AI+
Sbjct:  302 VFFDEIDAITPKRDGGAQREMERR--IVAQLLTSMDELTMEKTNGKPVIIIGATNRPDSLDAALRRAGRFDREICLNVPNEVSRLHILKKMSDNLKIDGAIDFAKLAKLTPGFVGADLKALVTAAGTCAIK 430          
BLAST of CX300926 vs. ExPASy Swiss-Prot
Match: PSMR_METM6 (Proteasome-activating nucleotidase OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=pan PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.163e-22
Identity = 55/129 (42.64%), Postives = 74/129 (57.36%), Query Frame = 2
Query:    2 LFFDELDSIXXXXXXXXXXXXXXXXXVMNQLLTEMDGVGAKKNVFVIGATNRPDIIDPALMRPGRLDQLIYIPMPDYESRLSILKAVLRKTPVSKDVDLSYLAAQTEKFTGADLTEICQRAAKLAIRED 388
            +F DE+D++                  + QLL EMDG  ++ +V +I ATNRPDI+DPA++RPGR D++I I MPD + RL ILK    K  + K VDL  +A   E   GADL  +C  A   AIRE+
Sbjct:  245 IFIDEIDAVASKRTESLTGGDREVQRTLMQLLAEMDGFDSRGDVKIIAATNRPDILDPAILRPGRFDRIIEISMPDEDGRLDILKIHTEKMNL-KGVDLREVAKLAENMVGADLKAVCTEAGMFAIREE 372          
BLAST of CX300926 vs. ExPASy Swiss-Prot
Match: PSMR_METHJ (Proteasome-activating nucleotidase OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=pan PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.163e-22
Identity = 57/129 (44.19%), Postives = 75/129 (58.14%), Query Frame = 2
Query:    2 LFFDELDSIXXXXXXXXXXXXXXXXXVMNQLLTEMDGVGAKKNVFVIGATNRPDIIDPALMRPGRLDQLIYIPMPDYESRLSILKAVLRKTPVSKDVDLSYLAAQTEKFTGADLTEICQRAAKLAIRED 388
            +F DE+D+I                  + QLL  MDG   + +V +IGATNR DI+D AL+RPGR D++I IP+PD E R SILK   R   +S+DVDL  +A  TE   GA+L  IC  A   AIR++
Sbjct:  250 VFIDEIDAIGASRTEAMTSGDREVQRTLMQLLAAMDGFEPRGDVKIIGATNRIDILDAALLRPGRFDRIIEIPLPDTEGRYSILKVHTRCMNLSEDVDLMEVARLTEGRNGAELNAICMEAGMFAIRKE 378          
BLAST of CX300926 vs. ExPASy Swiss-Prot
Match: FTSH7_ORYSJ (Cell division protease ftsH homolog 7, chloroplastic OS=Oryza sativa subsp. japonica GN=FTSH7 PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.163e-22
Identity = 58/132 (43.94%), Postives = 77/132 (58.33%), Query Frame = 2
Query:    2 LFFDELDSIXXXXXXXXXXXXXXXXX-VMNQLLTEMDGVGAKKNVFVIGATNRPDIIDPALMRPGRLDQLIYIPMPDYESRLSILKAVL--RKTPVSKDVDLSYLAAQTEKFTGADLTEICQRAAKLAIRED 388
            +F DE+D++                   +NQLLTEMDG      V V+GATNR D++DPAL RPGR D+++ +  PD   R SILK  +  ++ P+ KDVDLS +AA T  FTGADL  +   AA LA R +
Sbjct:  442 IFIDEIDAVAKSRDGRYRIVSNDEREQTLNQLLTEMDGFDTNSAVIVLGATNRADVLDPALRRPGRFDRVVMVEAPDRFGRESILKVHVSRKELPLGKDVDLSDIAAMTTGFTGADLANLVNEAALLAGRSN 573          
BLAST of CX300926 vs. ExPASy Swiss-Prot
Match: PSMR_METMP (Proteasome-activating nucleotidase OS=Methanococcus maripaludis GN=pan PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.355e-22
Identity = 55/129 (42.64%), Postives = 74/129 (57.36%), Query Frame = 2
Query:    2 LFFDELDSIXXXXXXXXXXXXXXXXXVMNQLLTEMDGVGAKKNVFVIGATNRPDIIDPALMRPGRLDQLIYIPMPDYESRLSILKAVLRKTPVSKDVDLSYLAAQTEKFTGADLTEICQRAAKLAIRED 388
            +F DE+D++                  + QLL EMDG  ++ +V +I ATNRPDI+DPA++RPGR D++I I MPD + RL ILK    K  + K VDL  +A   E   GADL  +C  A   AIRE+
Sbjct:  245 IFIDEIDAVASKRTESLTGGDREVQRTLMQLLAEMDGFDSRGDVKIIAATNRPDILDPAILRPGRFDRIIEISMPDEDGRLEILKIHTEKMNL-KGVDLREVAKIAENMVGADLKAVCTEAGMFAIREE 372          
BLAST of CX300926 vs. ExPASy Swiss-Prot
Match: PSMR_METM5 (Proteasome-activating nucleotidase OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=pan PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.355e-22
Identity = 55/129 (42.64%), Postives = 74/129 (57.36%), Query Frame = 2
Query:    2 LFFDELDSIXXXXXXXXXXXXXXXXXVMNQLLTEMDGVGAKKNVFVIGATNRPDIIDPALMRPGRLDQLIYIPMPDYESRLSILKAVLRKTPVSKDVDLSYLAAQTEKFTGADLTEICQRAAKLAIRED 388
            +F DE+D++                  + QLL EMDG  ++ +V +I ATNRPDI+DPA++RPGR D++I I MPD + RL ILK    K  + K VDL  +A   E   GADL  +C  A   AIRE+
Sbjct:  245 IFIDEIDAVASKRTESLTGGDREVQRTLMQLLAEMDGFDSRGDVKIIAATNRPDILDPAILRPGRFDRIIEISMPDEDGRLDILKIHTEKMNL-KGVDLREVAKIAENMVGADLKAVCTEAGMFAIREE 372          
BLAST of CX300926 vs. ExPASy Swiss-Prot
Match: FTSH_TOBAC (Cell division protease ftsH homolog, chloroplastic OS=Nicotiana tabacum GN=FTSH PE=2 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 9.355e-22
Identity = 51/130 (39.23%), Postives = 73/130 (56.15%), Query Frame = 2
Query:    2 LFFDELDSIXXXXXXXXXXXXXXXXXVMNQLLTEMDGVGAKKNVFVIGATNRPDIIDPALMRPGRLDQLIYIPMPDYESRLSILKAVLRKTPVSKDVDLSYLAAQTEKFTGADLTEICQRAAKLAIREDI 391
            +F DE+D++                  +NQLLTEMDG      V V+ ATNRPD++D AL+RPGR D+ + +  PD   R+ IL+   R   ++KDVD   +A +T  +TGADL  +   AA LA R ++
Sbjct:  349 VFIDEIDAVGRQRGAGMGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRIKILQVHSRGKALTKDVDFEKIARRTPGYTGADLQNLMNEAAILAARREL 478          
The following BLAST results are available for this feature:
BLAST of CX300926 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 323
Match NameE-valueIdentityDescription
FTSH_MYCBO5.484e-2241.09Cell division protease ftsH homolog OS=Mycobacteri... [more]
FTSH_MEDSA5.484e-2240.00Cell division protease ftsH homolog, chloroplastic... [more]
FTSH_CAPAN5.484e-2240.00Cell division protease ftsH homolog, chloroplastic... [more]
RIX7_YEAST7.163e-2240.46Ribosome biogenesis ATPase RIX7 OS=Saccharomyces c... [more]
PSMR_METM67.163e-2242.64Proteasome-activating nucleotidase OS=Methanococcu... [more]
PSMR_METHJ7.163e-2244.19Proteasome-activating nucleotidase OS=Methanospiri... [more]
FTSH7_ORYSJ7.163e-2243.94Cell division protease ftsH homolog 7, chloroplast... [more]
PSMR_METMP9.355e-2242.64Proteasome-activating nucleotidase OS=Methanococcu... [more]
PSMR_METM59.355e-2242.64Proteasome-activating nucleotidase OS=Methanococcu... [more]
FTSH_TOBAC9.355e-2239.23Cell division protease ftsH homolog, chloroplastic... [more]

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Properties
Property NameValue
Genbank descriptionC08003G07SK PhyRootSw1 Citrus sinensis cDNA clone C08003G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300926 ID=CX300926; Name=CX300926; organism=Citrus sinensis; type=EST; length=394bp
GTTGTTCTTTGATGAGTTAGATTCTATCGCTCAACAGCGTGGTGGAAGTC
AAGGAGATGGTGGAGGAGCTGGCGATCGTGTAATGAATCAGCTTCTTACT
GAAATGGACGGTGTTGGTGCCAAGAAGAATGTGTTCGTGATTGGAGCCAC
CAATAGACCTGACATCATTGACCCTGCTTTGATGAGACCTGGACGTTTAG
ATCAATTAATTTACATTCCTATGCCAGACTACGAATCAAGATTGTCAATT
TTAAAGGCTGTTTTAAGAAAGACTCCTGTGAGTAAGGACGTTGATCTTTC
CTACTTGGCTGCTCAAACCGAGAAGTTTACTGGTGCTGATTTGACTGAGA
TCTGCCAGCGTGCTGCTAAACTCGCTATTCGAGAAGATATCATG
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