EY660163

Overview
NameEY660163
Unique NameEY660163
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length666
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660163 vs. ExPASy Swiss-Prot
Match: RCA_MALDO (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Malus domestica GN=RCA PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.881e-25
Identity = 55/67 (82.09%), Postives = 62/67 (92.54%), Query Frame = 1
Query:   55 KSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNFYG 255
            K LVNSKE  PTFEQP+MT+EKLLEYGNM+VQEQENVKRVQLADKYLSEAALG+AN+DA+ +G FYG
Sbjct:  371 KKLVNSKEGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYLSEAALGDANSDAMNTGTFYG 437          
BLAST of EY660163 vs. ExPASy Swiss-Prot
Match: RCAB_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase B, chloroplastic OS=Hordeum vulgare GN=RCAB PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.299e-23
Identity = 51/67 (76.12%), Postives = 62/67 (92.54%), Query Frame = 1
Query:   55 KSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNFYG 255
            K LVNS+E  PTF+QP+MT+EKL+EYG+M+VQEQENVKRVQLADKYLSEAALG+AN DA+++G FYG
Sbjct:  358 KRLVNSREGPPTFDQPKMTIEKLMEYGHMLVQEQENVKRVQLADKYLSEAALGQANDDAMKTGAFYG 424          
BLAST of EY660163 vs. ExPASy Swiss-Prot
Match: RCA_PHAAU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus aureus GN=RCA PE=2 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 5.122e-23
Identity = 50/66 (75.76%), Postives = 61/66 (92.42%), Query Frame = 1
Query:   55 KSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNFY 252
            K LVNSKE  PTF+QP+M+++KLL+YGNM+VQEQENVKRVQLADKYL+EAALG AN DAI+SG+F+
Sbjct:  373 KKLVNSKEGPPTFDQPKMSLDKLLQYGNMLVQEQENVKRVQLADKYLNEAALGNANEDAIKSGSFF 438          
BLAST of EY660163 vs. ExPASy Swiss-Prot
Match: RCA1_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Larrea tridentata GN=RCA1 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 8.737e-23
Identity = 51/67 (76.12%), Postives = 59/67 (88.06%), Query Frame = 1
Query:   55 KSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNFYG 255
            K LVNSKE  P+FEQP+MT++KLL YG M+VQEQENVKRVQLADKY+SEAALG+AN DAI+ G FYG
Sbjct:  371 KKLVNSKEGPPSFEQPKMTIDKLLGYGGMLVQEQENVKRVQLADKYMSEAALGDANNDAIKRGTFYG 437          
BLAST of EY660163 vs. ExPASy Swiss-Prot
Match: RCA2_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Larrea tridentata GN=RCA2 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.141e-22
Identity = 50/65 (76.92%), Postives = 59/65 (90.77%), Query Frame = 1
Query:   55 KSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNF 249
            K LVNSKE  PTFEQP+MT++KLL+YGNM+V+EQENVKRVQLADKY+SEAALG+AN DAI+ G F
Sbjct:  371 KKLVNSKEGPPTFEQPKMTIDKLLQYGNMLVEEQENVKRVQLADKYMSEAALGDANQDAIKRGTF 435          
BLAST of EY660163 vs. ExPASy Swiss-Prot
Match: RCA1_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.947e-22
Identity = 50/64 (78.12%), Postives = 59/64 (92.19%), Query Frame = 1
Query:   61 LVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNFY 252
            L+NS +  PTFEQP+MT+EKLLEYGNM+VQEQENVKRVQLADKYL EAALG+ANADAI +G+F+
Sbjct:  377 LLNSFDGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYLKEAALGDANADAINNGSFF 440          
BLAST of EY660163 vs. ExPASy Swiss-Prot
Match: RCA_MAIZE (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Zea mays GN=RCA1 PE=2 SV=3)

HSP 1 Score: 105.145 bits (261), Expect = 3.320e-22
Identity = 49/66 (74.24%), Postives = 61/66 (92.42%), Query Frame = 1
Query:   55 KSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNFY 252
            + LVNSKE  PTFEQP++T+EKLLEYG+M+V EQENVKRVQLADKYL+EAALGEAN DA+++G+F+
Sbjct:  367 RKLVNSKEGPPTFEQPKITIEKLLEYGHMLVAEQENVKRVQLADKYLNEAALGEANEDAMKTGSFF 432          
BLAST of EY660163 vs. ExPASy Swiss-Prot
Match: RCA_SPIOL (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 5.663e-22
Identity = 48/67 (71.64%), Postives = 57/67 (85.07%), Query Frame = 1
Query:   55 KSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNFYG 255
            K LVNSK+  P FEQP MT++KL+EYGNM+VQEQENVKRVQLAD+Y+S AALG+AN DAI  G F+G
Sbjct:  369 KKLVNSKDGPPVFEQPEMTLQKLMEYGNMLVQEQENVKRVQLADQYMSSAALGDANKDAIDRGTFFG 435          

HSP 2 Score: 67.0106 bits (162), Expect = 9.928e-11
Identity = 28/38 (73.68%), Postives = 34/38 (89.47%), Query Frame = 3
Query:  396 GKAAQQMNVPVPEGCTDPTAENFDPTARSDDGSCQYTL 509
            GKAAQQ+++PV +GCTDP A+N+DPTARSDDGSC Y L
Sbjct:  435 GKAAQQVSLPVAQGCTDPEAKNYDPTARSDDGSCTYNL 472          
BLAST of EY660163 vs. ExPASy Swiss-Prot
Match: RCA_ORYSJ (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Oryza sativa subsp. japonica GN=RCA PE=1 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 5.663e-22
Identity = 48/67 (71.64%), Postives = 62/67 (92.54%), Query Frame = 1
Query:   55 KSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNFYG 255
            K LVNS+E  P FEQP+MT+EKL+EYG M+V+EQENVKRVQLA++YLSEAALG+AN+DA+++G+FYG
Sbjct:  362 KRLVNSREGPPEFEQPKMTIEKLMEYGYMLVKEQENVKRVQLAEQYLSEAALGDANSDAMKTGSFYG 428          
BLAST of EY660163 vs. ExPASy Swiss-Prot
Match: RCA_ARATH (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Arabidopsis thaliana GN=RCA PE=1 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 7.397e-22
Identity = 50/67 (74.63%), Postives = 56/67 (83.58%), Query Frame = 1
Query:   55 KSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNFYG 255
            K LVNS+E  P FEQP MT EKL+EYGNM+V EQENVKRVQLA+ YLS+AALG+ANADAI  G FYG
Sbjct:  371 KRLVNSREGPPVFEQPEMTYEKLMEYGNMLVMEQENVKRVQLAETYLSQAALGDANADAIGRGTFYG 437          

HSP 2 Score: 71.633 bits (174), Expect = 4.031e-12
Identity = 30/36 (83.33%), Postives = 33/36 (91.67%), Query Frame = 3
Query:  396 GKAAQQMNVPVPEGCTDPTAENFDPTARSDDGSCQY 503
            GK AQQ+N+PVPEGCTDP AENFDPTARSDDG+C Y
Sbjct:  437 GKGAQQVNLPVPEGCTDPVAENFDPTARSDDGTCVY 472          
The following BLAST results are available for this feature:
BLAST of EY660163 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
RCA_MALDO1.881e-2582.09Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAB_HORVU2.299e-2376.12Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_PHAAU5.122e-2375.76Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA1_LARTR8.737e-2376.12Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA2_LARTR1.141e-2276.92Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA1_TOBAC1.947e-2278.13Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_MAIZE3.320e-2274.24Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SPIOL5.663e-2271.64Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ORYSJ5.663e-2271.64Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ARATH7.397e-2274.63Ribulose bisphosphate carboxylase/oxygenase activa... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-019-C02-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660163 ID=EY660163; Name=EY660163; organism=Citrus sinensis; type=EST; length=666bp
CCACGCGTCCGGTGAGGAATTGTGATCTCTGGTATTGGTGTTGGAAGCAT
TGGCAAGAGCCTTGTGAACTCAAAGGAAGCAGCCCCAACATTCGAGCAAC
CAAGGATGACAATGGAGAAGCTGCTCGAGTACGGAAACATGATTGTGCAA
GAGCAAGAGAATGTGAAGAGAGTTCAGTTGGCTGACAAGTATTTGAGTGA
GGCCGCTCTTGGTGAAGCTAATGCAGATGCTATTCAGAGTGGAAATTTCT
ATGGTTAGCCCCCTTGATCCTAGCTAAGAGGCCTTGATGGGAGGTTTGCT
ACTAGCATTCTAGAAAATTTAGAGCATAAATTGAGATCAAATGAAGAATA
TAACAAAGCATTTTTTTTTTTTTTTGGGTAAATTTTGTTGTTGCAGGCAA
AGCAGCCCAGCAAATGAATGTTCCAGTTCCTGAAGGATGTACTGATCCTA
CTGCAGAAAACTTTGATCCAACTGCAAGAAGTGATGATGGAAGCTGCCAA
TACACGCTTTAGGCCTTGTTTCTAAGGGTTGAGAAGTGTCGCACTTTGCT
TAAGATGTGAGATATTCAAATAATATTGGTGCATTTTCATTTCTTTGGTA
ATTAGAAGAATCCTCTAATTTTGTGTTATATCACAACTCTTTATTCGATC
CTTAAAAAAAAAAAAA
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