GO242034

Overview
NameGO242034
Unique NameGO242034
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO242034 vs. ExPASy Swiss-Prot
Match: SODCP_ARATH (Superoxide dismutase [Cu-Zn], chloroplastic OS=Arabidopsis thaliana GN=SODCP PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.193e-16
Identity = 56/153 (36.60%), Postives = 78/153 (50.98%), Query Frame = 2
Query:   20 STMVNAVAVITGTNGRKGTVSFSVEGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIA-TFEIYKTIPLSGTNSVIGRGLVVH-------------SSPSPDPGDGVAWGTIGLS 403
            S    AVAV+ GT+  +G V+ + + SGPTTV   ++GL PG H   +H +G+ +N  ISTGP F P               G L NI   ++G+A T  +   IPL+G NSV+GR  VVH             S  + + G  +A G IGL+
Sbjct:   62 SAAKKAVAVLKGTSDVEGVVTLTQDDSGPTTVNVRITGLTPGPHGFHLHEFGDTTNGCISTGPHFNPNNMTHGAPEDECRHAGDLGNINANADGVAETTIVDNQIPLTGPNSVVGRAFVVHELKDDLGKGGHELSLTTGNAGGRLACGVIGLT 214          
BLAST of GO242034 vs. ExPASy Swiss-Prot
Match: SODCP_PEA (Superoxide dismutase [Cu-Zn], chloroplastic OS=Pisum sativum GN=SODCP PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.559e-16
Identity = 57/148 (38.51%), Postives = 78/148 (52.70%), Query Frame = 2
Query:   35 AVAVITGTNGRKGTVSFSVEGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKP----AGAD-------GFLENITVTSEGIATFEIY-KTIPLSGTNSVIGRGLVVH-------------SSPSPDPGDGVAWGTIGLS 403
            AV+V+ GT+  +G V+ + +  GPTTV   ++GL PG H   +H YG+ +N  ISTGP F P     GA        G L NI   +EG+A   I    IPL+G NSV+GR LVVH             S  + + G  +A G +GL+
Sbjct:   53 AVSVLKGTSAVEGVVTLTQDDEGPTTVNVRITGLTPGLHGFHLHEYGDTTNGCISTGPHFNPNKLTHGAPEDEIRHAGDLGNIVANAEGVAEATIVDNQIPLTGPNSVVGRALVVHELQDDLGKGGHELSLSTGNAGGRLACGVVGLT 200          
BLAST of GO242034 vs. ExPASy Swiss-Prot
Match: SODCP_SOLCS (Superoxide dismutase [Cu-Zn], chloroplastic OS=Solidago canadensis var. scabra GN=SODCP PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.036e-16
Identity = 54/148 (36.49%), Postives = 76/148 (51.35%), Query Frame = 2
Query:   35 AVAVITGTNGRKGTVSFSVEGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIY-KTIPLSGTNSVIGRGLVVH-------------SSPSPDPGDGVAWGTIGLS 403
            AVAV+ GT+  +G V+ + E  GPTTV   ++GL PG H   +H +G+ +N  ISTGP F P G             G L NI   ++G+A   I    IPL+G N+V+GR  VVH             S  + + G  +A G +GL+
Sbjct:   71 AVAVLKGTSSVEGVVTLTQEEDGPTTVNVKITGLTPGPHGFHLHEFGDTTNGCISTGPHFNPNGNTHGAPEDENRHAGDLGNIIANADGVAEATIVDNQIPLTGPNAVVGRAFVVHELADDLGKGGHELSLSTGNAGGRLACGVVGLT 218          
BLAST of GO242034 vs. ExPASy Swiss-Prot
Match: SODC2_MESCR (Superoxide dismutase [Cu-Zn] 2 OS=Mesembryanthemum crystallinum GN=SODCC.2 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.036e-16
Identity = 48/120 (40.00%), Postives = 68/120 (56.67%), Query Frame = 2
Query:   26 MVNAVAVITGTNGRKGTVSFSVEGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIYKT-IPLSGTNSVIGRGLVVHS 349
            ++ AVAVI G N  KG++ F  + +G T VKG ++GL PG H   IH  G+ +N   STGP F P   D           G L N+   ++G+A   +  T IPLSG +S++GR +VVH+
Sbjct:    3 VIKAVAVINGNNNVKGSLQFIQDSTGVTHVKGRITGLTPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPFDTERHAGDLGNVVAGADGVAEVSVRDTQIPLSGQHSILGRAVVVHA 122          
BLAST of GO242034 vs. ExPASy Swiss-Prot
Match: SODC_PRIGL (Superoxide dismutase [Cu-Zn] OS=Prionace glauca GN=sod1 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.535e-16
Identity = 52/128 (40.62%), Postives = 67/128 (52.34%), Query Frame = 2
Query:   29 VNAVAVITGTNGRKGTVSFSVEGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKP-----AGAD------GFLENITVTSEGIATFEIY-KTIPLSGTNSVIGRGLVVHSSPSPDPGDG 376
            + AV V+ GT    GTV F     GP T+KGS++GL PG H   +H +G+ +N  IS GP + P      G D      G L N+     G+A FEI  + + LSG  S+IGR LVVH     D G G
Sbjct:    1 MKAVCVLKGTGEVTGTVLFEQAADGPVTLKGSITGLTPGKHGFHVHAFGDNTNGCISAGPHYNPFSKNHGGPDDEERHVGDLGNVEANGNGVAEFEIKDRQLHLSGERSIIGRTLVVHEK-EDDLGKG 127          
BLAST of GO242034 vs. ExPASy Swiss-Prot
Match: SODCP_MEDSA (Superoxide dismutase [Cu-Zn], chloroplastic OS=Medicago sativa GN=SODCP PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.839e-15
Identity = 57/148 (38.51%), Postives = 75/148 (50.68%), Query Frame = 2
Query:   35 AVAVITGTNGRKGTVSFSVEGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKP----AGAD-------GFLENITVTSEGIATFEIY-KTIPLSGTNSVIGRGLVVH-------------SSPSPDPGDGVAWGTIGLS 403
            AVAV+ G +  +G V+ + E   PTTV   ++GL PG H   +H YG+ +N  ISTGP F P     GA        G L NI   + G+A   I    IPL+G NSVIGR LVVH             S  + + G  +A G +GL+
Sbjct:   53 AVAVLKGNSTVEGVVTLTQENESPTTVNVRITGLTPGLHGFHLHEYGDTTNGCISTGPHFNPNQLTHGAPEDEIRHAGDLGNIIADANGVAEATIVDNQIPLTGPNSVIGRALVVHELEDDLGKGGHELSLSTGNAGGRLACGVVGLT 200          
BLAST of GO242034 vs. ExPASy Swiss-Prot
Match: SODCP_SOLLC (Superoxide dismutase [Cu-Zn], chloroplastic OS=Solanum lycopersicum GN=SODCP.2 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.014e-15
Identity = 54/148 (36.49%), Postives = 76/148 (51.35%), Query Frame = 2
Query:   35 AVAVITGTNGRKGTVSFSVEGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKP------AGAD-----GFLENITVTSEGIATFEIY-KTIPLSGTNSVIGRGLVVH-------------SSPSPDPGDGVAWGTIGLS 403
            AVAV+ G +  +G V+ S +  GPTTV   ++GL PG H   +H YG+ +N  +STG  F P      A  D     G L NI   ++G+A   +    IPL+G NSV+GR LVVH             S  + + G  +A G +GL+
Sbjct:   68 AVAVLKGNSNVEGVVTLSQDDDGPTTVNVRITGLAPGLHGFHLHEYGDTTNGCMSTGAHFNPNKLTHGAPGDEIRHAGDLGNIVANADGVAEVTLVDNQIPLTGPNSVVGRALVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLT 215          
BLAST of GO242034 vs. ExPASy Swiss-Prot
Match: SODCP_ZANAE (Superoxide dismutase [Cu-Zn], chloroplastic OS=Zantedeschia aethiopica GN=SODCP PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.117e-14
Identity = 57/148 (38.51%), Postives = 74/148 (50.00%), Query Frame = 2
Query:   35 AVAVITGTNGRKGTVSFSVEGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKP----AGAD-------GFLENITVTSEGIATFEIY-KTIPLSGTNSVIGRGLVVH-------------SSPSPDPGDGVAWGTIGLS 403
            AVAV+ GT+   G V+   E  GPTTV   ++GL PG H   +H YG+ +N  ISTG  F P     GA        G L NI    +G+A   I    IPLSG+NSV+GR  VVH             S  + + G  +A G +GL+
Sbjct:   67 AVAVLKGTSQVDGVVTLVQEDDGPTTVNVRITGLTPGLHGFHLHEYGDTTNGCISTGSHFNPNKLTHGAPMDVVRHAGDLGNIVANVDGLAEATIVDDQIPLSGSNSVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLT 214          
BLAST of GO242034 vs. ExPASy Swiss-Prot
Match: SODCP_PINSY (Superoxide dismutase [Cu-Zn], chloroplastic (Fragment) OS=Pinus sylvestris GN=SODCP PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.240e-14
Identity = 54/137 (39.42%), Postives = 71/137 (51.82%), Query Frame = 2
Query:   68 KGTVSFSVEGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPA----GAD-------GFLENITVTSEGIATFEIY-KTIPLSGTNSVIGRGLVVH-------------SSPSPDPGDGVAWGTIGLS 403
            +G V+ S E +GPTTVK  L+GL PG H   +H +G+ +N  +STG  F P     GA        G L NI   S+G+A   I    IPLSG +SVIGR LVVH             S  + + G  +A G +GL+
Sbjct:    3 EGVVTLSQEDNGPTTVKVRLTGLTPGKHGFHLHEFGDTTNGCMSTGSHFNPKKLTHGAPEDDVRHAGDLGNIVAGSDGVAEATIVDNQIPLSGPDSVIGRALVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLT 139          
BLAST of GO242034 vs. ExPASy Swiss-Prot
Match: SODC_HALRO (Superoxide dismutase [Cu-Zn] OS=Halocynthia roretzi PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.235e-13
Identity = 52/128 (40.62%), Postives = 70/128 (54.69%), Query Frame = 2
Query:   29 VNAVAVITGTNGRKGTVSFSVEGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKP----AGAD-------GFLENITVTSEGIATFEIY-KTIPLSGTNSVIGRGLVVHSSPSPDPGDG 376
            + AV V+ G+   KGT++F  +  G  TV G +SGL PG H   IH YG+++N   S+G  F P     GA        G L NIT  S G+AT  I  + I L+G +S+IGR +VVH+    D G G
Sbjct:    3 IKAVCVLVGSV--KGTLNFKQDAIGSCTVTGEVSGLIPGKHGFHIHEYGDLTNGCTSSGGHFNPFKQIHGAPEDDIRHVGDLGNITADSSGVATVNITDRMISLTGEHSIIGRAVVVHAG-EDDLGKG 127          
The following BLAST results are available for this feature:
BLAST of GO242034 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
SODCP_ARATH1.193e-1636.60Superoxide dismutase [Cu-Zn], chloroplastic OS=Ara... [more]
SODCP_PEA1.559e-1638.51Superoxide dismutase [Cu-Zn], chloroplastic OS=Pis... [more]
SODCP_SOLCS2.036e-1636.49Superoxide dismutase [Cu-Zn], chloroplastic OS=Sol... [more]
SODC2_MESCR2.036e-1640.00Superoxide dismutase [Cu-Zn] 2 OS=Mesembryanthemum... [more]
SODC_PRIGL4.535e-1640.63Superoxide dismutase [Cu-Zn] OS=Prionace glauca GN... [more]
SODCP_MEDSA3.839e-1538.51Superoxide dismutase [Cu-Zn], chloroplastic OS=Med... [more]
SODCP_SOLLC5.014e-1536.49Superoxide dismutase [Cu-Zn], chloroplastic OS=Sol... [more]
SODCP_ZANAE1.117e-1438.51Superoxide dismutase [Cu-Zn], chloroplastic OS=Zan... [more]
SODCP_PINSY7.240e-1439.42Superoxide dismutase [Cu-Zn], chloroplastic (Fragm... [more]
SODC_HALRO1.235e-1340.63Superoxide dismutase [Cu-Zn] OS=Halocynthia roretz... [more]

Pages

back to top
Properties
Property NameValue
Genbank description682 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 825 5, mRNA sequence.