CN189319

Overview
NameCN189319
Unique NameCN189319
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length754
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189319 vs. ExPASy Swiss-Prot
Match: MDHM_CITLA (Malate dehydrogenase, mitochondrial OS=Citrullus lanatus GN=MMDH PE=1 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.068e-33
Identity = 73/126 (57.94%), Postives = 94/126 (74.60%), Query Frame = 2
Query:  380 ALRSTFARKAQSSEQRPQ-YALQPQASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNIVVIPAGVPRKPGMTRDDLFNINANIVKT 754
            ++RS  +R + S+    + +A +     KVAVLGAAGGIGQPLALL+K++PLVS L LYD+    GVAAD+ H NT S+V  + G E+L  AL+G ++V+IPAGVPRKPGMTRDDLFNINA IVK+
Sbjct:    8 SVRSAVSRSSSSNRLLSRSFATESVPERKVAVLGAAGGIGQPLALLMKLNPLVSKLALYDIAGTPGVAADVGHVNTRSEVTGYVGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKS 133          
BLAST of CN189319 vs. ExPASy Swiss-Prot
Match: MDHM2_ARATH (Malate dehydrogenase 2, mitochondrial OS=Arabidopsis thaliana GN=At3g15020 PE=1 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.006e-33
Identity = 73/125 (58.40%), Postives = 91/125 (72.80%), Query Frame = 2
Query:  386 RSTFARKAQSSEQ---RPQYALQPQASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNIVVIPAGVPRKPGMTRDDLFNINANIVK 751
            RS   R A   +Q   R  +A +     KV +LGAAGGIGQPL+LL+K++PLVS+L LYD+ N  GVAAD+ H NT SQV  + G ++L  AL+G ++V+IPAGVPRKPGMTRDDLFNINA IVK
Sbjct:    3 RSMIVRSASPVKQGLLRRGFASESVPDRKVVILGAAGGIGQPLSLLMKLNPLVSSLSLYDIANTPGVAADVGHINTRSQVSGYMGDDDLGKALEGADLVIIPAGVPRKPGMTRDDLFNINAGIVK 127          
BLAST of CN189319 vs. ExPASy Swiss-Prot
Match: MDHM_HUMAN (Malate dehydrogenase, mitochondrial OS=Homo sapiens GN=MDH2 PE=1 SV=3)

HSP 1 Score: 140.969 bits (354), Expect = 6.834e-33
Identity = 74/122 (60.66%), Postives = 90/122 (73.77%), Query Frame = 2
Query:  389 STFARKAQSSEQRPQYALQPQASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNIVVIPAGVPRKPGMTRDDLFNINANIVKT 754
            S  AR A ++ +R  ++   Q + KVAVLGA+GGIGQPL+LL+K SPLVS L LYD+ +  GVAADLSH  T + V  + GPE+L   LKG ++VVIPAGVPRKPGMTRDDLFN NA IV T
Sbjct:    3 SALARPASAALRR-SFSTSAQNNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETKAAVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVAT 123          
BLAST of CN189319 vs. ExPASy Swiss-Prot
Match: MDHM_PONAB (Malate dehydrogenase, mitochondrial OS=Pongo abelii GN=MDH2 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 8.925e-33
Identity = 75/122 (61.48%), Postives = 89/122 (72.95%), Query Frame = 2
Query:  389 STFARKAQSSEQRPQYALQPQASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNIVVIPAGVPRKPGMTRDDLFNINANIVKT 754
            S  AR A S+  R  ++   Q + KVAVLGA+GGIGQPL+LL+K SPLVS L LYD+ +  GVAADLSH  T + V  + GPE+L   LKG ++VVIPAGVPRKPGMTRDDLFN NA IV T
Sbjct:    3 SALARPA-SAVLRRSFSTSAQNNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETKATVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVAT 123          
BLAST of CN189319 vs. ExPASy Swiss-Prot
Match: MDHM_MACFA (Malate dehydrogenase, mitochondrial OS=Macaca fascicularis GN=MDH2 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 8.925e-33
Identity = 74/122 (60.66%), Postives = 90/122 (73.77%), Query Frame = 2
Query:  389 STFARKAQSSEQRPQYALQPQASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNIVVIPAGVPRKPGMTRDDLFNINANIVKT 754
            S  AR A ++ +R  ++   Q + KVAVLGA+GGIGQPL+LL+K SPLVS L LYD+ +  GVAADLSH  T + V  + GPE+L   LKG ++VVIPAGVPRKPGMTRDDLFN NA IV T
Sbjct:    3 SALARPASAALRR-SFSTSAQNNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETKAVVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVAT 123          
BLAST of CN189319 vs. ExPASy Swiss-Prot
Match: MDHM_MOUSE (Malate dehydrogenase, mitochondrial OS=Mus musculus GN=Mdh2 PE=1 SV=3)

HSP 1 Score: 140.198 bits (352), Expect = 1.166e-32
Identity = 74/122 (60.66%), Postives = 90/122 (73.77%), Query Frame = 2
Query:  389 STFARKAQSSEQRPQYALQPQASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNIVVIPAGVPRKPGMTRDDLFNINANIVKT 754
            S  AR A ++ +R  ++   Q + KVAVLGA+GGIGQPL+LL+K SPLVS L LYD+ +  GVAADLSH  T + V  + GPE+L   LKG ++VVIPAGVPRKPGMTRDDLFN NA IV T
Sbjct:    3 SALARPAGAALRR-SFSTSAQNNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRANVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVAT 123          
BLAST of CN189319 vs. ExPASy Swiss-Prot
Match: MDHM_PIG (Malate dehydrogenase, mitochondrial OS=Sus scrofa GN=MDH2 PE=1 SV=2)

HSP 1 Score: 139.813 bits (351), Expect = 1.522e-32
Identity = 74/122 (60.66%), Postives = 90/122 (73.77%), Query Frame = 2
Query:  389 STFARKAQSSEQRPQYALQPQASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNIVVIPAGVPRKPGMTRDDLFNINANIVKT 754
            S  AR A ++ +R  ++   Q + KVAVLGA+GGIGQPL+LL+K SPLVS L LYD+ +  GVAADLSH  T + V  + GPE+L   LKG ++VVIPAGVPRKPGMTRDDLFN NA IV T
Sbjct:    3 SALARPAGAALRR-SFSTSXQNNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVAT 123          
BLAST of CN189319 vs. ExPASy Swiss-Prot
Match: MDHM_BOVIN (Malate dehydrogenase, mitochondrial OS=Bos taurus GN=MDH2 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.522e-32
Identity = 74/122 (60.66%), Postives = 90/122 (73.77%), Query Frame = 2
Query:  389 STFARKAQSSEQRPQYALQPQASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNIVVIPAGVPRKPGMTRDDLFNINANIVKT 754
            S  AR A ++ +R  ++   Q + KVAVLGA+GGIGQPL+LL+K SPLVS L LYD+ +  GVAADLSH  T + V  + GPE+L   LKG ++VVIPAGVPRKPGMTRDDLFN NA IV T
Sbjct:    3 SALARPAGAALRR-SFSTSAQNNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVAT 123          
BLAST of CN189319 vs. ExPASy Swiss-Prot
Match: MDHM_RAT (Malate dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Mdh2 PE=1 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 3.392e-32
Identity = 70/110 (63.64%), Postives = 83/110 (75.45%), Query Frame = 2
Query:  425 RPQYALQPQASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNIVVIPAGVPRKPGMTRDDLFNINANIVKT 754
            R  ++   Q + KVAVLGA+GGIGQPL+LL+K SPLVS L LYD+ +  GVAADLSH  T + V  + GPE+L   LKG ++VVIPAGVPRKPGMTRDDLFN NA IV T
Sbjct:   14 RRSFSTSAQNNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRANVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVAT 123          
BLAST of CN189319 vs. ExPASy Swiss-Prot
Match: MDHG2_BRANA (Malate dehydrogenase 2, glyoxysomal OS=Brassica napus GN=MDH2 PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.392e-32
Identity = 68/99 (68.69%), Postives = 82/99 (82.83%), Query Frame = 2
Query:  458 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNIVVIPAGVPRKPGMTRDDLFNINANIVKT 754
            FKVA+LGAAGGIGQ L+LL+KM+PLVS LHLYDV+N  GV AD+SH +T + V  F G ++L  AL G+++V+IPAGVPRKPGMTRDDLF INA IVKT
Sbjct:   47 FKVAILGAAGGIGQSLSLLMKMNPLVSLLHLYDVVNAPGVTADVSHMDTGAVVRGFLGAKQLEDALTGMDLVIIPAGVPRKPGMTRDDLFKINAGIVKT 145          
The following BLAST results are available for this feature:
BLAST of CN189319 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 154
Match NameE-valueIdentityDescription
MDHM_CITLA3.068e-3357.94Malate dehydrogenase, mitochondrial OS=Citrullus l... [more]
MDHM2_ARATH4.006e-3358.40Malate dehydrogenase 2, mitochondrial OS=Arabidops... [more]
MDHM_HUMAN6.834e-3360.66Malate dehydrogenase, mitochondrial OS=Homo sapien... [more]
MDHM_PONAB8.925e-3361.48Malate dehydrogenase, mitochondrial OS=Pongo abeli... [more]
MDHM_MACFA8.925e-3360.66Malate dehydrogenase, mitochondrial OS=Macaca fasc... [more]
MDHM_MOUSE1.166e-3260.66Malate dehydrogenase, mitochondrial OS=Mus musculu... [more]
MDHM_PIG1.522e-3260.66Malate dehydrogenase, mitochondrial OS=Sus scrofa ... [more]
MDHM_BOVIN1.522e-3260.66Malate dehydrogenase, mitochondrial OS=Bos taurus ... [more]
MDHM_RAT3.392e-3263.64Malate dehydrogenase, mitochondrial OS=Rattus norv... [more]
MDHG2_BRANA3.392e-3268.69Malate dehydrogenase 2, glyoxysomal OS=Brassica na... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001K19_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001K19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189319 ID=CN189319; Name=CN189319; organism=Citrus sinensis; type=EST; length=754bp
GACGGCTTTCGAAAAAGCGTAGATTCGTTCAAGGCCCATTCGGCGGAGGA
AGAGACACCCAGTTTACAATAACCCTTTCAAAAATCTTCTTCTTCTTCTT
CTCTCTTTCCCCTCAACGCCAGCAGCAACACCACCATCTCTTCCAGCTTC
ACGCAAATCTCAAGTGTCAGAGTGTGAAATGGCCGCTACATCAGCTACAA
CCTTTTCAATTAGATCAACTATTGCCTTTGGCCCCAAGGCAGGCCAACTT
CCACCGTCAAAACCCTCTGGTGTGAGGTTCAACTCCAAGAACTCACTTGT
GAGTTTCAGTGGCCTCAAGGCAGTGACATCAGTTATCTGTGAATCAAATA
CCTCTTTCTTGAACAAGGAGAGTTGTTCAGCTCTTCGAAGCACTTTTGCA
AGAAAAGCCCAAAGTTCAGAGCAGAGGCCTCAGTATGCCCTACAGCCCCA
GGCTTCTTTTAAAGTAGCAGTTCTTGGAGCTGCTGGTGGAATAGGTCAAC
CCTTAGCACTTCTAATCAAGATGTCCCCACTAGTATCAGCCCTTCACCTC
TATGATGTAATGAATGTCAAGGGAGTTGCTGCTGACCTCAGTCACTGCAA
CACTCCCTCTCAAGTTCTGGATTTCACAGGACCTGAAGAATTAGCCAGTG
CTTTGAAAGGGGTGAATATCGTCGTCATACCTGCTGGAGTTCCAAGAAAG
CCTGGGATGACCCGTGATGACCTCTTCAACATCAACGCCAACATAGTAAA
GACC
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