CN189319

Overview
NameCN189319
Unique NameCN189319
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length754
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN189319 vs. ExPASy Swiss-Prot
Match: MDH_YERPB (Malate dehydrogenase OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=mdh PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.978e-20
Identity = 59/99 (59.60%), Postives = 69/99 (69.70%), Query Frame = 2 
Query:  461 KVAVLGAAGGIGQPLALLIKMS-PLVSALHLYDVMNVK-GVAADLSHCNTPSQVLDFTGPEELASALKGVNIVVIPAGVPRKPGMTRDDLFNINANIVK 751
            KVAVLGAAGGIGQ LALL+K   P  S L LYD+  V  GVA DLSH  T   +  F+G E+   AL+G +IV+I AGV RKPGM R DLFN+NA IV+
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSDLSLYDIAPVTPGVAVDLSHIPTAVNIKGFSG-EDATPALQGADIVLISAGVARKPGMDRSDLFNVNAGIVR 99
[Close]
BLAST of CN189319 vs. ExPASy Swiss-Prot
Match: MDH_YERPA (Malate dehydrogenase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=mdh PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.978e-20
Identity = 59/99 (59.60%), Postives = 69/99 (69.70%), Query Frame = 2 
Query:  461 KVAVLGAAGGIGQPLALLIKMS-PLVSALHLYDVMNVK-GVAADLSHCNTPSQVLDFTGPEELASALKGVNIVVIPAGVPRKPGMTRDDLFNINANIVK 751
            KVAVLGAAGGIGQ LALL+K   P  S L LYD+  V  GVA DLSH  T   +  F+G E+   AL+G +IV+I AGV RKPGM R DLFN+NA IV+
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSDLSLYDIAPVTPGVAVDLSHIPTAVNIKGFSG-EDATPALQGADIVLISAGVARKPGMDRSDLFNVNAGIVR 99
[Close]
BLAST of CN189319 vs. ExPASy Swiss-Prot
Match: MDH_YERP3 (Malate dehydrogenase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=mdh PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.978e-20
Identity = 59/99 (59.60%), Postives = 69/99 (69.70%), Query Frame = 2 
Query:  461 KVAVLGAAGGIGQPLALLIKMS-PLVSALHLYDVMNVK-GVAADLSHCNTPSQVLDFTGPEELASALKGVNIVVIPAGVPRKPGMTRDDLFNINANIVK 751
            KVAVLGAAGGIGQ LALL+K   P  S L LYD+  V  GVA DLSH  T   +  F+G E+   AL+G +IV+I AGV RKPGM R DLFN+NA IV+
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSDLSLYDIAPVTPGVAVDLSHIPTAVNIKGFSG-EDATPALQGADIVLISAGVARKPGMDRSDLFNVNAGIVR 99
[Close]
BLAST of CN189319 vs. ExPASy Swiss-Prot
Match: MDH_VIBCH (Malate dehydrogenase OS=Vibrio cholerae GN=mdh PE=3 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 2.978e-20
Identity = 58/99 (58.59%), Postives = 70/99 (70.71%), Query Frame = 2 
Query:  461 KVAVLGAAGGIGQPLALLIKMS-PLVSALHLYDVMNVK-GVAADLSHCNTPSQVLDFTGPEELASALKGVNIVVIPAGVPRKPGMTRDDLFNINANIVK 751
            KVAV+GAAGGIGQ LALL+K   P  S L LYD+  V  GVAADLSH  TP  +  + G E+   AL+G ++V++ AGV RKPGM R DLFN+NA IVK
Sbjct:    2 KVAVIGAAGGIGQALALLLKNRLPAGSDLALYDIAPVTPGVAADLSHIPTPVTIKGYAG-EDPTPALEGADVVLVSAGVARKPGMDRADLFNVNAGIVK 99
[Close]
BLAST of CN189319 vs. ExPASy Swiss-Prot
Match: MDH_SHEWM (Malate dehydrogenase OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=mdh PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.978e-20
Identity = 59/99 (59.60%), Postives = 70/99 (70.71%), Query Frame = 2 
Query:  461 KVAVLGAAGGIGQPLALLIKMS-PLVSALHLYDVMNVK-GVAADLSHCNTPSQVLDFTGPEELASALKGVNIVVIPAGVPRKPGMTRDDLFNINANIVK 751
            KVAVLGAAGGIGQ LALL+K   P  S L LYD+  V  GVA DLSH  T  +V  F G ++ + AL+G ++V+I AGV RKPGM R DLFNINA IV+
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPADSKLSLYDIAPVTPGVAVDLSHIPTAVEVKGFAG-QDPSPALEGADVVLISAGVARKPGMDRSDLFNINAGIVR 99
[Close]
BLAST of CN189319 vs. ExPASy Swiss-Prot
Match: MDH_SALDC (Malate dehydrogenase OS=Salmonella dublin (strain CT_02021853) GN=mdh PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.978e-20
Identity = 58/99 (58.59%), Postives = 70/99 (70.71%), Query Frame = 2 
Query:  461 KVAVLGAAGGIGQPLALLIKMS-PLVSALHLYDVMNVK-GVAADLSHCNTPSQVLDFTGPEELASALKGVNIVVIPAGVPRKPGMTRDDLFNINANIVK 751
            KVAVLGAAGGIGQ LALL+K   P  S L LYD+  V  GVA DLSH  T  ++  F+G E+   AL+G ++V+I AGV R+PGM R DLFN+NA IVK
Sbjct:    2 KVAVLGAAGGIGQALALLLKNQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSG-EDATPALEGADVVLISAGVARRPGMDRSDLFNVNAGIVK 99
[Close]
BLAST of CN189319 vs. ExPASy Swiss-Prot
Match: MDH_HAES1 (Malate dehydrogenase OS=Haemophilus somnus (strain 129Pt) GN=mdh PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.978e-20
Identity = 58/99 (58.59%), Postives = 70/99 (70.71%), Query Frame = 2 
Query:  461 KVAVLGAAGGIGQPLALLIKMS-PLVSALHLYDVMNVK-GVAADLSHCNTPSQVLDFTGPEELASALKGVNIVVIPAGVPRKPGMTRDDLFNINANIVK 751
            K+AVLGAAGGIGQ LALL+K+  P  S L LYD+  V  GVAAD+SH  T  ++  F G E+   AL+  ++V+I AGV RKPGM R DLFNINA IVK
Sbjct:    2 KIAVLGAAGGIGQALALLLKLQLPAGSELSLYDIAPVTPGVAADVSHIPTAVKIQGFAG-EDPTPALENADVVLISAGVARKPGMDRSDLFNINAGIVK 99
[Close]
BLAST of CN189319 vs. ExPASy Swiss-Prot
Match: MDH_HAEPS (Malate dehydrogenase OS=Haemophilus parasuis serovar 5 (strain SH0165) GN=mdh PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.978e-20
Identity = 58/99 (58.59%), Postives = 71/99 (71.72%), Query Frame = 2 
Query:  461 KVAVLGAAGGIGQPLALLIKMS-PLVSALHLYDVMNVK-GVAADLSHCNTPSQVLDFTGPEELASALKGVNIVVIPAGVPRKPGMTRDDLFNINANIVK 751
            KVAVLGAAGGIGQ LALL+K+  P  + L LYD+  V  GVA D+SH  T  +V+ + G E+   AL+G N+V+I AGV RKPGM R DLFNINA IV+
Sbjct:    2 KVAVLGAAGGIGQALALLLKLQLPAGTNLALYDIAPVTPGVAVDVSHIPTAVKVVGYAG-EDPTPALEGANLVLISAGVARKPGMDRSDLFNINAGIVR 99
[Close]
BLAST of CN189319 vs. ExPASy Swiss-Prot
Match: MDH_SERP5 (Malate dehydrogenase OS=Serratia proteamaculans (strain 568) GN=mdh PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.890e-20
Identity = 58/99 (58.59%), Postives = 69/99 (69.70%), Query Frame = 2 
Query:  461 KVAVLGAAGGIGQPLALLIKMS-PLVSALHLYDVMNVK-GVAADLSHCNTPSQVLDFTGPEELASALKGVNIVVIPAGVPRKPGMTRDDLFNINANIVK 751
            KVAVLGAAGGIGQ LALL+K   P  S L LYD+  V  GVA DLSH  T  ++  F+G E+   AL G ++V+I AGV RKPGM R DLFN+NA IV+
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSG-EDATPALHGADVVLISAGVARKPGMDRSDLFNVNAGIVR 99
[Close]
BLAST of CN189319 vs. ExPASy Swiss-Prot
Match: MDH_HAES2 (Malate dehydrogenase OS=Haemophilus somnus (strain 2336) GN=mdh PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.890e-20
Identity = 58/99 (58.59%), Postives = 70/99 (70.71%), Query Frame = 2 
Query:  461 KVAVLGAAGGIGQPLALLIKMS-PLVSALHLYDVMNVK-GVAADLSHCNTPSQVLDFTGPEELASALKGVNIVVIPAGVPRKPGMTRDDLFNINANIVK 751
            K+AVLGAAGGIGQ LALL+K+  P  S L LYD+  V  GVAAD+SH  T  ++  F G E+   AL+  ++V+I AGV RKPGM R DLFNINA IVK
Sbjct:    2 KIAVLGAAGGIGQALALLLKLQLPAGSELSLYDIAPVTPGVAADVSHIPTAVKIQGFAG-EDPIPALENADVVLISAGVARKPGMDRSDLFNINAGIVK 99
The following BLAST results are available for this feature:
BLAST of CN189319 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 154
Match NameE-valueIdentityDescription
MDH_YERPB2.978e-2059.60Malate dehydrogenase OS=Yersinia pseudotuberculosi... [more]
MDH_YERPA2.978e-2059.60Malate dehydrogenase OS=Yersinia pestis bv. Antiqu... [more]
MDH_YERP32.978e-2059.60Malate dehydrogenase OS=Yersinia pseudotuberculosi... [more]
MDH_VIBCH2.978e-2058.59Malate dehydrogenase OS=Vibrio cholerae GN=mdh PE=... [more]
MDH_SHEWM2.978e-2059.60Malate dehydrogenase OS=Shewanella woodyi (strain ... [more]
MDH_SALDC2.978e-2058.59Malate dehydrogenase OS=Salmonella dublin (strain ... [more]
MDH_HAES12.978e-2058.59Malate dehydrogenase OS=Haemophilus somnus (strain... [more]
MDH_HAEPS2.978e-2058.59Malate dehydrogenase OS=Haemophilus parasuis serov... [more]
MDH_SERP53.890e-2058.59Malate dehydrogenase OS=Serratia proteamaculans (s... [more]
MDH_HAES23.890e-2058.59Malate dehydrogenase OS=Haemophilus somnus (strain... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001K19_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001K19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189319 ID=CN189319; Name=CN189319; organism=Citrus sinensis; type=EST; length=754bp
GACGGCTTTCGAAAAAGCGTAGATTCGTTCAAGGCCCATTCGGCGGAGGA
AGAGACACCCAGTTTACAATAACCCTTTCAAAAATCTTCTTCTTCTTCTT
CTCTCTTTCCCCTCAACGCCAGCAGCAACACCACCATCTCTTCCAGCTTC
ACGCAAATCTCAAGTGTCAGAGTGTGAAATGGCCGCTACATCAGCTACAA
CCTTTTCAATTAGATCAACTATTGCCTTTGGCCCCAAGGCAGGCCAACTT
CCACCGTCAAAACCCTCTGGTGTGAGGTTCAACTCCAAGAACTCACTTGT
GAGTTTCAGTGGCCTCAAGGCAGTGACATCAGTTATCTGTGAATCAAATA
CCTCTTTCTTGAACAAGGAGAGTTGTTCAGCTCTTCGAAGCACTTTTGCA
AGAAAAGCCCAAAGTTCAGAGCAGAGGCCTCAGTATGCCCTACAGCCCCA
GGCTTCTTTTAAAGTAGCAGTTCTTGGAGCTGCTGGTGGAATAGGTCAAC
CCTTAGCACTTCTAATCAAGATGTCCCCACTAGTATCAGCCCTTCACCTC
TATGATGTAATGAATGTCAAGGGAGTTGCTGCTGACCTCAGTCACTGCAA
CACTCCCTCTCAAGTTCTGGATTTCACAGGACCTGAAGAATTAGCCAGTG
CTTTGAAAGGGGTGAATATCGTCGTCATACCTGCTGGAGTTCCAAGAAAG
CCTGGGATGACCCGTGATGACCTCTTCAACATCAACGCCAACATAGTAAA
GACC
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