CN189319

Overview
NameCN189319
Unique NameCN189319
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length754
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189319 vs. ExPASy Swiss-Prot
Match: MDHG1_ARATH (Malate dehydrogenase, glyoxysomal OS=Arabidopsis thaliana GN=At5g09660 PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 4.430e-32
Identity = 67/99 (67.68%), Postives = 82/99 (82.83%), Query Frame = 2
Query:  458 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNIVVIPAGVPRKPGMTRDDLFNINANIVKT 754
            FKVA+LGAAGGIGQ L+LL+KM+PLVS LHLYDV+N  GV AD+SH +T + V  F G ++L  AL G+++V+IPAG+PRKPGMTRDDLF INA IVKT
Sbjct:   43 FKVAILGAAGGIGQSLSLLMKMNPLVSLLHLYDVVNAPGVTADVSHMDTGAVVRGFLGAKQLEDALTGMDLVIIPAGIPRKPGMTRDDLFKINAGIVKT 141          
BLAST of CN189319 vs. ExPASy Swiss-Prot
Match: MDHG1_BRANA (Malate dehydrogenase 1, glyoxysomal OS=Brassica napus GN=MDH1 PE=2 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 7.556e-32
Identity = 67/99 (67.68%), Postives = 82/99 (82.83%), Query Frame = 2
Query:  458 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNIVVIPAGVPRKPGMTRDDLFNINANIVKT 754
            FKVA+LGAAGGIGQ L+LL+KM+PLVS LHLYDV+N  GV AD+SH +T + V  F G ++L  AL G+++V+IPAGVPRKPGMTRDDLF INA IV+T
Sbjct:   47 FKVAILGAAGGIGQSLSLLMKMNPLVSLLHLYDVVNAPGVTADVSHMDTGAVVRGFLGAKQLEDALTGMDLVIIPAGVPRKPGMTRDDLFKINAGIVRT 145          
BLAST of CN189319 vs. ExPASy Swiss-Prot
Match: MDHM_CAEEL (Probable malate dehydrogenase, mitochondrial OS=Caenorhabditis elegans GN=mdh-1 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.431e-30
Identity = 68/120 (56.67%), Postives = 87/120 (72.50%), Query Frame = 2
Query:  392 TFARKAQSSEQRPQYALQPQASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNIVVIPAGVPRKPGMTRDDLFNINANIVK 751
            T  + A +S  R         + KVA+LGAAGGIGQPL LL+K  PLV+ L LYDV+N  GVAADLSH ++ ++V   TGP+EL +A++  +++VIPAGVPRKPGMTRDDLFN NA IV+
Sbjct:    7 TLVQAAANSGLRAVSVRHSSQAPKVALLGAAGGIGQPLGLLLKQDPLVAHLALYDVVNTPGVAADLSHIDSNAKVTAHTGPKELYAAVENADVIVIPAGVPRKPGMTRDDLFNTNAGIVR 126          
BLAST of CN189319 vs. ExPASy Swiss-Prot
Match: MDHM_CHLRE (Malate dehydrogenase, mitochondrial OS=Chlamydomonas reinhardtii PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.058e-29
Identity = 76/156 (48.72%), Postives = 98/156 (62.82%), Query Frame = 2
Query:  326 TSVICESNTSFLNKESCSALRSTF---ARKAQSSEQRPQYALQPQASF-----------KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNIVVIPAGVPRKPGMTRDDLFNINANIVK 751
            +S+  +SN +  N   C  L   F   A  + +S    ++A Q    F           KVAVLGAAGGIGQPL++L+KM+  VS+L LYD+    GVAAD+SH NT +QV  F   + LA AL+G ++V+IPAGVPRKPGMTRDDLF INA IV+
Sbjct:    5 SSIRADSNCTLPNNPVCVLLPVDFIVAAMASSTSSAMAKWAAQAARGFAAAAPSSGKGRKVAVLGAAGGIGQPLSMLMKMNSQVSSLSLYDIAGTPGVAADVSHINTKAQVKGF-DKDGLAEALRGCDLVIIPAGVPRKPGMTRDDLFKINAGIVR 159          
BLAST of CN189319 vs. ExPASy Swiss-Prot
Match: MDHM_SCHMA (Malate dehydrogenase, mitochondrial (Fragment) OS=Schistosoma mansoni PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.881e-28
Identity = 60/90 (66.67%), Postives = 72/90 (80.00%), Query Frame = 2
Query:  479 AAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNIVVIPAGVPRKPGMTRDDLFNINANIV 748
            A+GGIG+PL+LL+K SPL+S L LYD+ +VKGVAADLSH  T + V    GP ELA  L G N+V+IPAG+PRKPGMTRDDLFN NA+IV
Sbjct:    1 ASGGIGEPLSLLLKQSPLISQLALYDIAHVKGVAADLSHIETQAHVTAHLGPGELAECLTGANVVIIPAGLPRKPGMTRDDLFNTNASIV 90          
BLAST of CN189319 vs. ExPASy Swiss-Prot
Match: MDHM_SCHPO (Malate dehydrogenase, mitochondrial OS=Schizosaccharomyces pombe GN=MDH1 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 8.091e-26
Identity = 58/100 (58.00%), Postives = 76/100 (76.00%), Query Frame = 2
Query:  455 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEE-LASALKGVNIVVIPAGVPRKPGMTRDDLFNINANIVK 751
            +FKVAVLGA GGIGQPL++L+K++  VS L L+D+    GVAAD+ H NT S V+ +   ++ L  AL G ++V+IPAGVPRKPGMTRDDLF  NA+IV+
Sbjct:   28 AFKVAVLGAGGGIGQPLSMLLKLNDKVSELALFDIRGAPGVAADIGHINTTSNVVGYAPDDKGLEKALNGADVVIIPAGVPRKPGMTRDDLFATNASIVR 127          
BLAST of CN189319 vs. ExPASy Swiss-Prot
Match: MDHM_YEAST (Malate dehydrogenase, mitochondrial OS=Saccharomyces cerevisiae GN=MDH1 PE=1 SV=2)

HSP 1 Score: 116.701 bits (291), Expect = 1.380e-25
Identity = 62/100 (62.00%), Postives = 76/100 (76.00%), Query Frame = 2
Query:  458 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFT--GPEELASALKGVNIVVIPAGVPRKPGMTRDDLFNINANIVK 751
            +KV VLGA GGIGQPL+LL+K++  V+ L LYD+   KGVA DLSH  T S V  FT   P+ L +ALK  ++V+IPAGVPRKPGMTRDDLF INA+IV+
Sbjct:   18 YKVTVLGAGGGIGQPLSLLLKLNHKVTDLRLYDLKGAKGVATDLSHIPTNSVVKGFTPEEPDGLNNALKDTDMVLIPAGVPRKPGMTRDDLFAINASIVR 117          
BLAST of CN189319 vs. ExPASy Swiss-Prot
Match: MDHP_YEAST (Malate dehydrogenase, peroxisomal OS=Saccharomyces cerevisiae GN=MDH3 PE=1 SV=3)

HSP 1 Score: 113.62 bits (283), Expect = 1.168e-24
Identity = 54/98 (55.10%), Postives = 73/98 (74.49%), Query Frame = 2
Query:  461 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNIVVIPAGVPRKPGMTRDDLFNINANIVKT 754
            KVA+LGA+GG+GQPL+LL+K+SP VS L LYD+   +G+  DLSH NT S  + +   + + + L    +V+IPAGVPRKPG+TRDDLF +NA IVK+
Sbjct:    3 KVAILGASGGVGQPLSLLLKLSPYVSELALYDIRAAEGIGKDLSHINTNSSCVGY-DKDSIENTLSNAQVVLIPAGVPRKPGLTRDDLFKMNAGIVKS 99          
BLAST of CN189319 vs. ExPASy Swiss-Prot
Match: MDH_IDILO (Malate dehydrogenase OS=Idiomarina loihiensis GN=mdh PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.909e-23
Identity = 65/99 (65.66%), Postives = 73/99 (73.74%), Query Frame = 2
Query:  461 KVAVLGAAGGIGQPLALLIKMS-PLVSALHLYDVMNV-KGVAADLSHCNTPSQVLDFTGPEELASALKGVNIVVIPAGVPRKPGMTRDDLFNINANIVK 751
            KVAVLGAAGGIGQ L+LL+K   P  S L LYDV  V  GVA DLSH  T  +V  F G ++LASAL G +IV+IPAGVPRKPGM R DLFN+NA IVK
Sbjct:    2 KVAVLGAAGGIGQALSLLLKTQLPAGSELSLYDVAPVVPGVAVDLSHIPTDVKVTGF-GKDDLASALVGSDIVLIPAGVPRKPGMDRSDLFNMNAGIVK 99          
BLAST of CN189319 vs. ExPASy Swiss-Prot
Match: MDH_PSEA6 (Malate dehydrogenase OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=mdh PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.427e-22
Identity = 63/99 (63.64%), Postives = 72/99 (72.73%), Query Frame = 2
Query:  461 KVAVLGAAGGIGQPLALLIKMS-PLVSALHLYDVMNV-KGVAADLSHCNTPSQVLDFTGPEELASALKGVNIVVIPAGVPRKPGMTRDDLFNINANIVK 751
            KVAVLGAAGGIGQ L+LL+K   P  + L LYDV  V  GVA DLSH  T  +V  F G ++LA AL G +IV+IPAGVPRKPGM R DLFNINA IV+
Sbjct:    2 KVAVLGAAGGIGQALSLLLKTQLPAGTELALYDVAPVVPGVAVDLSHIPTDVKVEGF-GKDDLAKALTGSDIVLIPAGVPRKPGMDRSDLFNINAGIVR 99          
The following BLAST results are available for this feature:
BLAST of CN189319 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 154
Match NameE-valueIdentityDescription
MDHG1_ARATH4.430e-3267.68Malate dehydrogenase, glyoxysomal OS=Arabidopsis t... [more]
MDHG1_BRANA7.556e-3267.68Malate dehydrogenase 1, glyoxysomal OS=Brassica na... [more]
MDHM_CAEEL2.431e-3056.67Probable malate dehydrogenase, mitochondrial OS=Ca... [more]
MDHM_CHLRE2.058e-2948.72Malate dehydrogenase, mitochondrial OS=Chlamydomon... [more]
MDHM_SCHMA3.881e-2866.67Malate dehydrogenase, mitochondrial (Fragment) OS=... [more]
MDHM_SCHPO8.091e-2658.00Malate dehydrogenase, mitochondrial OS=Schizosacch... [more]
MDHM_YEAST1.380e-2562.00Malate dehydrogenase, mitochondrial OS=Saccharomyc... [more]
MDHP_YEAST1.168e-2455.10Malate dehydrogenase, peroxisomal OS=Saccharomyces... [more]
MDH_IDILO4.909e-2365.66Malate dehydrogenase OS=Idiomarina loihiensis GN=m... [more]
MDH_PSEA65.427e-2263.64Malate dehydrogenase OS=Pseudoalteromonas atlantic... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001K19_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001K19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189319 ID=CN189319; Name=CN189319; organism=Citrus sinensis; type=EST; length=754bp
GACGGCTTTCGAAAAAGCGTAGATTCGTTCAAGGCCCATTCGGCGGAGGA
AGAGACACCCAGTTTACAATAACCCTTTCAAAAATCTTCTTCTTCTTCTT
CTCTCTTTCCCCTCAACGCCAGCAGCAACACCACCATCTCTTCCAGCTTC
ACGCAAATCTCAAGTGTCAGAGTGTGAAATGGCCGCTACATCAGCTACAA
CCTTTTCAATTAGATCAACTATTGCCTTTGGCCCCAAGGCAGGCCAACTT
CCACCGTCAAAACCCTCTGGTGTGAGGTTCAACTCCAAGAACTCACTTGT
GAGTTTCAGTGGCCTCAAGGCAGTGACATCAGTTATCTGTGAATCAAATA
CCTCTTTCTTGAACAAGGAGAGTTGTTCAGCTCTTCGAAGCACTTTTGCA
AGAAAAGCCCAAAGTTCAGAGCAGAGGCCTCAGTATGCCCTACAGCCCCA
GGCTTCTTTTAAAGTAGCAGTTCTTGGAGCTGCTGGTGGAATAGGTCAAC
CCTTAGCACTTCTAATCAAGATGTCCCCACTAGTATCAGCCCTTCACCTC
TATGATGTAATGAATGTCAAGGGAGTTGCTGCTGACCTCAGTCACTGCAA
CACTCCCTCTCAAGTTCTGGATTTCACAGGACCTGAAGAATTAGCCAGTG
CTTTGAAAGGGGTGAATATCGTCGTCATACCTGCTGGAGTTCCAAGAAAG
CCTGGGATGACCCGTGATGACCTCTTCAACATCAACGCCAACATAGTAAA
GACC
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