CN189319

Overview
NameCN189319
Unique NameCN189319
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length754
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN189319 vs. ExPASy Swiss-Prot
Match: MDH_PSEHT (Malate dehydrogenase OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=mdh PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 7.088e-22
Identity = 62/100 (62.00%), Postives = 71/100 (71.00%), Query Frame = 2 
Query:  461 KVAVLGAAGGIGQPLALLIKMS-PLVSALHLYDVMNV-KGVAADLSHCNTPSQVLDFTGPEELASALKGVNIVVIPAGVPRKPGMTRDDLFNINANIVKT 754
            KVAVLGAAGGIGQ L+LL+K   P  S L LYDV  V  GVA DLSH  T  +V  F G + L  ALK  +IV+IPAG+PRKPGM R DLFN+NA I+KT
Sbjct:    2 KVAVLGAAGGIGQALSLLLKTGLPAGSELSLYDVAPVVPGVAVDLSHIPTAVKVAGF-GADALNEALKDADIVLIPAGMPRKPGMDRADLFNVNAGIIKT 100
[Close]
BLAST of CN189319 vs. ExPASy Swiss-Prot
Match: MDH_ALTMD (Malate dehydrogenase OS=Alteromonas macleodii (strain DSM 17117 / Deep ecotype) GN=mdh PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 9.258e-22
Identity = 62/99 (62.63%), Postives = 71/99 (71.72%), Query Frame = 2 
Query:  461 KVAVLGAAGGIGQPLALLIKMS-PLVSALHLYDVMNV-KGVAADLSHCNTPSQVLDFTGPEELASALKGVNIVVIPAGVPRKPGMTRDDLFNINANIVK 751
            KVAVLGAAGGIGQ L+LL+K   P  S L LYDV  V  GVA DLSH  T  +V    G ++LA AL G ++V+IPAG+PRKPGM R DLFNINA IVK
Sbjct:    2 KVAVLGAAGGIGQALSLLLKTQLPAGSDLALYDVAPVVPGVAVDLSHIPTAVKVTGH-GKDDLADALTGADVVLIPAGMPRKPGMDRSDLFNINAGIVK 99
[Close]
BLAST of CN189319 vs. ExPASy Swiss-Prot
Match: MDH_COLP3 (Malate dehydrogenase OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=mdh PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.209e-21
Identity = 61/99 (61.62%), Postives = 71/99 (71.72%), Query Frame = 2 
Query:  461 KVAVLGAAGGIGQPLALLIKMS-PLVSALHLYDVMNV-KGVAADLSHCNTPSQVLDFTGPEELASALKGVNIVVIPAGVPRKPGMTRDDLFNINANIVK 751
            KVAVLGAAGGIGQ L+LL+K   P  S L LYDV  V  GVA DLSH  T  +V  F G ++L  AL G +IV+IPAG+PRKPGM R DLFN+NA I+K
Sbjct:    2 KVAVLGAAGGIGQALSLLLKTQLPAGSELSLYDVAPVVPGVAVDLSHIPTDVKVAGF-GRDDLNGALTGADIVLIPAGMPRKPGMDRADLFNVNAGIIK 99
[Close]
BLAST of CN189319 vs. ExPASy Swiss-Prot
Match: MDH_ACTPJ (Malate dehydrogenase OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) GN=mdh PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.062e-21
Identity = 58/99 (58.59%), Postives = 74/99 (74.75%), Query Frame = 2 
Query:  461 KVAVLGAAGGIGQPLALLIKMS-PLVSALHLYDVMNVK-GVAADLSHCNTPSQVLDFTGPEELASALKGVNIVVIPAGVPRKPGMTRDDLFNINANIVK 751
            KVA+LGAAGGIGQ LALL+K+  P+ + L LYD+  V  G+A D+SH  T    + ++G E+ + ALKG N+V+I AGV RKPGMTR DLFNINA+IVK
Sbjct:    2 KVALLGAAGGIGQTLALLLKLRLPVGTDLALYDISPVTPGIAVDISHIPTSVSAVGYSG-EDPSEALKGANLVIITAGVARKPGMTRADLFNINADIVK 99
[Close]
BLAST of CN189319 vs. ExPASy Swiss-Prot
Match: MDH_ACTP7 (Malate dehydrogenase OS=Actinobacillus pleuropneumoniae serotype 7 (strain AP76) GN=mdh PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.062e-21
Identity = 58/99 (58.59%), Postives = 74/99 (74.75%), Query Frame = 2 
Query:  461 KVAVLGAAGGIGQPLALLIKMS-PLVSALHLYDVMNVK-GVAADLSHCNTPSQVLDFTGPEELASALKGVNIVVIPAGVPRKPGMTRDDLFNINANIVK 751
            KVA+LGAAGGIGQ LALL+K+  P+ + L LYD+  V  G+A D+SH  T    + ++G E+ + ALKG N+V+I AGV RKPGMTR DLFNINA+IVK
Sbjct:    2 KVALLGAAGGIGQTLALLLKLRLPVGTDLALYDISPVTPGIAVDISHIPTSVSAVGYSG-EDPSEALKGANLVIITAGVARKPGMTRADLFNINADIVK 99
[Close]
BLAST of CN189319 vs. ExPASy Swiss-Prot
Match: MDH_ACTP2 (Malate dehydrogenase OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=mdh PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.062e-21
Identity = 58/99 (58.59%), Postives = 74/99 (74.75%), Query Frame = 2 
Query:  461 KVAVLGAAGGIGQPLALLIKMS-PLVSALHLYDVMNVK-GVAADLSHCNTPSQVLDFTGPEELASALKGVNIVVIPAGVPRKPGMTRDDLFNINANIVK 751
            KVA+LGAAGGIGQ LALL+K+  P+ + L LYD+  V  G+A D+SH  T    + ++G E+ + ALKG N+V+I AGV RKPGMTR DLFNINA+IVK
Sbjct:    2 KVALLGAAGGIGQTLALLLKLRLPVGTDLALYDISPVTPGIAVDISHIPTSVSAVGYSG-EDPSEALKGANLVIITAGVARKPGMTRADLFNINADIVK 99
[Close]
BLAST of CN189319 vs. ExPASy Swiss-Prot
Match: MDH_ECOLU (Malate dehydrogenase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=mdh PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.694e-21
Identity = 60/99 (60.61%), Postives = 70/99 (70.71%), Query Frame = 2 
Query:  461 KVAVLGAAGGIGQPLALLIKMS-PLVSALHLYDVMNVK-GVAADLSHCNTPSQVLDFTGPEELASALKGVNIVVIPAGVPRKPGMTRDDLFNINANIVK 751
            KVAVLGAAGGIGQ LALL+K   P  S L LYD+  V  GVA DLSH  T  ++  F+G E+   AL+G N+V+I AGV RKPGM R DLFN+NA IVK
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSG-EDATPALEGANVVLISAGVARKPGMDRSDLFNVNAGIVK 99
[Close]
BLAST of CN189319 vs. ExPASy Swiss-Prot
Match: MDH_ECOLC (Malate dehydrogenase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=mdh PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.694e-21
Identity = 60/99 (60.61%), Postives = 71/99 (71.72%), Query Frame = 2 
Query:  461 KVAVLGAAGGIGQPLALLIKMS-PLVSALHLYDVMNVK-GVAADLSHCNTPSQVLDFTGPEELASALKGVNIVVIPAGVPRKPGMTRDDLFNINANIVK 751
            KVAVLGAAGGIGQ LALL+K   P  S L LYD+  V  GVA DLSH  T  ++  F+G E+  SAL+G ++V+I AGV RKPGM R DLFN+NA IVK
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSG-EDATSALEGADVVLISAGVARKPGMDRSDLFNVNAGIVK 99
[Close]
BLAST of CN189319 vs. ExPASy Swiss-Prot
Match: MDH_PHOLL (Malate dehydrogenase OS=Photorhabdus luminescens subsp. laumondii GN=mdh PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 6.001e-21
Identity = 60/99 (60.61%), Postives = 69/99 (69.70%), Query Frame = 2 
Query:  461 KVAVLGAAGGIGQPLALLIKMS-PLVSALHLYDVMNVK-GVAADLSHCNTPSQVLDFTGPEELASALKGVNIVVIPAGVPRKPGMTRDDLFNINANIVK 751
            KVAVLGAAGGIGQ LALL+K   P  S L LYD+  V  GVA DLSH  T  ++  F G E+   AL+G N+V+I AGV RKPGM R DLFNINA IV+
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTEVKIKGFAG-EDATPALEGANVVLISAGVARKPGMDRSDLFNINAGIVR 99
[Close]
BLAST of CN189319 vs. ExPASy Swiss-Prot
Match: MDH_VIBFM (Malate dehydrogenase OS=Vibrio fischeri (strain MJ11) GN=mdh PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.837e-21
Identity = 60/100 (60.00%), Postives = 71/100 (71.00%), Query Frame = 2 
Query:  461 KVAVLGAAGGIGQPLALLIKMS-PLVSALHLYDVMNVK-GVAADLSHCNTPSQVLDFTGPEELASALKGVNIVVIPAGVPRKPGMTRDDLFNINANIVKT 754
            KVAV+GAAGGIGQ LALL+K   P  S L LYD+  V  GVAADLSH  TP  +  + G E+   AL+G ++V+I AGV RKPGM R DLFNINA IVK+
Sbjct:    2 KVAVIGAAGGIGQALALLLKNRLPAGSDLALYDIAPVTPGVAADLSHIPTPVSIKGYCG-EDPTPALEGADVVLISAGVARKPGMDRSDLFNINAGIVKS 100
The following BLAST results are available for this feature:
BLAST of CN189319 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 154
Match NameE-valueIdentityDescription
MDH_PSEHT7.088e-2262.00Malate dehydrogenase OS=Pseudoalteromonas haloplan... [more]
MDH_ALTMD9.258e-2262.63Malate dehydrogenase OS=Alteromonas macleodii (str... [more]
MDH_COLP31.209e-2161.62Malate dehydrogenase OS=Colwellia psychrerythraea ... [more]
MDH_ACTPJ2.062e-2158.59Malate dehydrogenase OS=Actinobacillus pleuropneum... [more]
MDH_ACTP72.062e-2158.59Malate dehydrogenase OS=Actinobacillus pleuropneum... [more]
MDH_ACTP22.062e-2158.59Malate dehydrogenase OS=Actinobacillus pleuropneum... [more]
MDH_ECOLU2.694e-2160.61Malate dehydrogenase OS=Escherichia coli O17:K52:H... [more]
MDH_ECOLC2.694e-2160.61Malate dehydrogenase OS=Escherichia coli (strain A... [more]
MDH_PHOLL6.001e-2160.61Malate dehydrogenase OS=Photorhabdus luminescens s... [more]
MDH_VIBFM7.837e-2160.00Malate dehydrogenase OS=Vibrio fischeri (strain MJ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001K19_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001K19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189319 ID=CN189319; Name=CN189319; organism=Citrus sinensis; type=EST; length=754bp
GACGGCTTTCGAAAAAGCGTAGATTCGTTCAAGGCCCATTCGGCGGAGGA
AGAGACACCCAGTTTACAATAACCCTTTCAAAAATCTTCTTCTTCTTCTT
CTCTCTTTCCCCTCAACGCCAGCAGCAACACCACCATCTCTTCCAGCTTC
ACGCAAATCTCAAGTGTCAGAGTGTGAAATGGCCGCTACATCAGCTACAA
CCTTTTCAATTAGATCAACTATTGCCTTTGGCCCCAAGGCAGGCCAACTT
CCACCGTCAAAACCCTCTGGTGTGAGGTTCAACTCCAAGAACTCACTTGT
GAGTTTCAGTGGCCTCAAGGCAGTGACATCAGTTATCTGTGAATCAAATA
CCTCTTTCTTGAACAAGGAGAGTTGTTCAGCTCTTCGAAGCACTTTTGCA
AGAAAAGCCCAAAGTTCAGAGCAGAGGCCTCAGTATGCCCTACAGCCCCA
GGCTTCTTTTAAAGTAGCAGTTCTTGGAGCTGCTGGTGGAATAGGTCAAC
CCTTAGCACTTCTAATCAAGATGTCCCCACTAGTATCAGCCCTTCACCTC
TATGATGTAATGAATGTCAAGGGAGTTGCTGCTGACCTCAGTCACTGCAA
CACTCCCTCTCAAGTTCTGGATTTCACAGGACCTGAAGAATTAGCCAGTG
CTTTGAAAGGGGTGAATATCGTCGTCATACCTGCTGGAGTTCCAAGAAAG
CCTGGGATGACCCGTGATGACCTCTTCAACATCAACGCCAACATAGTAAA
GACC
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