CN189314

Overview
NameCN189314
Unique NameCN189314
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length665
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189314 vs. ExPASy Swiss-Prot
Match: BCAT2_PONAB (Branched-chain-amino-acid aminotransferase, mitochondrial OS=Pongo abelii GN=BCAT2 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.602e-11
Identity = 47/140 (33.57%), Postives = 74/140 (52.86%), Query Frame = -2
Query:  269 GGAGGVKAISNYAPVLKALIRAKSRGFSDVLYLDSVNRKNVEEVSSCNIFVV---KGNVIS--TPATNGTILEGITRRSVIEIARDYG-YQVEERVIPVDELINA------DQVFCTGTAVVVAPVGSITYQNKRVEFKT 652
            GG G  K   NY P +     A  +G   VL+L   + + + EV + NIFV    +  V+   TP  NG IL G+ R+S++++A+ +G ++V ER I   +L+ A       +VF +GTA  V PV  I Y+++ +   T
Sbjct:  223 GGVGNYKLGGNYGPTVLVQQEALKQGCEQVLWLYGPDHQ-LTEVGTMNIFVYWTHEDGVLELVTPPLNGVILPGVVRQSLLDLAQTWGEFRVVERTITTKQLLQALEEGRVREVFGSGTACQVCPVHRILYKDRNLHIPT 361          
BLAST of CN189314 vs. ExPASy Swiss-Prot
Match: BCA2_YEAST (Branched-chain-amino-acid aminotransferase, cytosolic OS=Saccharomyces cerevisiae GN=BAT2 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.602e-11
Identity = 51/173 (29.48%), Postives = 88/173 (50.87%), Query Frame = -2
Query:  203 GGAGGVKAISNYAPVLKALIRAKSRGFSDVLYLDSVNRKNVEEVSSCNIFVV-------KGNVISTPATNGTILEGITRRSVIEIARD----YGYQVEERVIPVDELINAD------QVFCTGTAVVVAPVGSITYQNKRVEF------KTGSRSVYQELYSTLVGIQTGVIE 652
            GG G  K  +NYAP +   ++A SRG+   L+L   N  N+ EV + N F V       K  +++ P  +GTILEG+TR S++ +A++      + + ER   + E+          + F +GTA +V+P+  I ++ +++        +TG   + +E+   + GIQ G  E
Sbjct:  196 GGCGDKKLGANYAPCVLPQLQAASRGYQQNLWLFGPN-NNITEVGTMNAFFVFKDSKTGKKELVTAP-LDGTILEGVTRDSILNLAKERLEPSEWTISERYFTIGEVTERSKNGELLEAFGSGTAAIVSPIKEIGWKGEQINIPLLPGEQTG--PLAKEVAQWINGIQYGETE 364          
The following BLAST results are available for this feature:
BLAST of CN189314 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
BCAT2_PONAB7.602e-1133.57Branched-chain-amino-acid aminotransferase, mitoch... [more]
BCA2_YEAST7.602e-1129.48Branched-chain-amino-acid aminotransferase, cytoso... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001K17_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001K17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189314 ID=CN189314; Name=CN189314; organism=Citrus sinensis; type=EST; length=665bp
TTTTTTTTTTTTTTTAATGTTCATATTTCTTTCATTTATTACCATCAGCT
TTGATGGGATTTAAAAATACATGGAAACTTTTTTTTTTACCTTACATAAT
ATGGGGCCAACAGCATTTTGTAACGACATTCTGTAAGTAAGCATAGCATT
ATTGGTGTTTAAACTTTGATTTTTAAACCTCCACAGTCCATCCTTTCTTA
TCCTCAATAACACCCGTTTGAATTCCTACGAGAGTTGAGTACAATTCCTG
ATACACCGAGCGTGACCCTGTTTTAAATTCAACTCTTTTATTTTGATATG
TGATACTGCCCACTGGAGCAACAACTACAGCGGTTCCAGTGCAAAATACT
TGGTCGGCATTGATCAGTTCGTCCACAGGAATAACACGTTCCTCAACCTG
ATAGCCATAATCCCTGGCAATTTCAATTACACTTCTTCTGGTAATCCCTT
CAAGAATAGTTCCATTTGTAGCGGGAGTTGAAATTACATTGCCCTTTACA
ACAAAAATGTTACAAGAAGAGACTTCCTCCACATTTTTCCTATTGACCGA
GTCAAGGTACAAGACATCCGAAAATCCTCTGCTCTTGGCTCGGATTAATG
CTTTCAGAACAGGAGCATAATTGCTGATTGCTTTTACCCCTCCAGCGCCG
CCGCAAAAATGAAAT
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