EY757478

Overview
NameEY757478
Unique NameEY757478
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length393
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY757478 vs. ExPASy Swiss-Prot
Match: H4_SILLA (Histone H4 OS=Silene latifolia GN=SlH4 PE=3 SV=3)

HSP 1 Score: 115.546 bits (288), Expect = 8.208e-26
Identity = 60/63 (95.24%), Postives = 60/63 (95.24%), Query Frame = 2 
Query:   14 RPARICGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 202
            R AR  GVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   37 RLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of EY757478 vs. ExPASy Swiss-Prot
Match: H4_PEA (Histone H4 OS=Pisum sativum PE=1 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 8.208e-26
Identity = 60/63 (95.24%), Postives = 60/63 (95.24%), Query Frame = 2 
Query:   14 RPARICGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 202
            R AR  GVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   37 RLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of EY757478 vs. ExPASy Swiss-Prot
Match: H4_MAIZE (Histone H4 OS=Zea mays GN=H4C7 PE=1 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 8.208e-26
Identity = 60/63 (95.24%), Postives = 60/63 (95.24%), Query Frame = 2 
Query:   14 RPARICGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 202
            R AR  GVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   37 RLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of EY757478 vs. ExPASy Swiss-Prot
Match: H4_LOLTE (Histone H4 OS=Lolium temulentum PE=3 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 8.208e-26
Identity = 60/63 (95.24%), Postives = 60/63 (95.24%), Query Frame = 2 
Query:   14 RPARICGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 202
            R AR  GVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   37 RLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of EY757478 vs. ExPASy Swiss-Prot
Match: H4_FLATR (Histone H4 OS=Flaveria trinervia GN=hh4 PE=3 SV=3)

HSP 1 Score: 115.546 bits (288), Expect = 8.208e-26
Identity = 60/63 (95.24%), Postives = 60/63 (95.24%), Query Frame = 2 
Query:   14 RPARICGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 202
            R AR  GVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   37 RLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of EY757478 vs. ExPASy Swiss-Prot
Match: H4_EUCGL (Histone H4 OS=Eucalyptus globulus PE=3 SV=3)

HSP 1 Score: 115.546 bits (288), Expect = 8.208e-26
Identity = 60/63 (95.24%), Postives = 60/63 (95.24%), Query Frame = 2 
Query:   14 RPARICGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 202
            R AR  GVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   37 RLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of EY757478 vs. ExPASy Swiss-Prot
Match: H4_CHEMJ (Histone H4 OS=Chelidonium majus PE=3 SV=3)

HSP 1 Score: 115.546 bits (288), Expect = 8.208e-26
Identity = 60/63 (95.24%), Postives = 60/63 (95.24%), Query Frame = 2 
Query:   14 RPARICGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 202
            R AR  GVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   37 RLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of EY757478 vs. ExPASy Swiss-Prot
Match: H4_ARATH (Histone H4 OS=Arabidopsis thaliana GN=At1g07660 PE=1 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 8.208e-26
Identity = 60/63 (95.24%), Postives = 60/63 (95.24%), Query Frame = 2 
Query:   14 RPARICGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 202
            R AR  GVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   37 RLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of EY757478 vs. ExPASy Swiss-Prot
Match: H42_WHEAT (Histone H4 variant TH091 OS=Triticum aestivum PE=3 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 8.208e-26
Identity = 60/63 (95.24%), Postives = 60/63 (95.24%), Query Frame = 2 
Query:   14 RPARICGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 202
            R AR  GVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   37 RLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of EY757478 vs. ExPASy Swiss-Prot
Match: H41_WHEAT (Histone H4 variant TH011 OS=Triticum aestivum PE=3 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 8.208e-26
Identity = 60/63 (95.24%), Postives = 60/63 (95.24%), Query Frame = 2 
Query:   14 RPARICGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 202
            R AR  GVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   37 RLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99
The following BLAST results are available for this feature:
BLAST of EY757478 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107
Match NameE-valueIdentityDescription
H4_SILLA8.208e-2695.24Histone H4 OS=Silene latifolia GN=SlH4 PE=3 SV=3[more]
H4_PEA8.208e-2695.24Histone H4 OS=Pisum sativum PE=1 SV=2[more]
H4_MAIZE8.208e-2695.24Histone H4 OS=Zea mays GN=H4C7 PE=1 SV=2[more]
H4_LOLTE8.208e-2695.24Histone H4 OS=Lolium temulentum PE=3 SV=2[more]
H4_FLATR8.208e-2695.24Histone H4 OS=Flaveria trinervia GN=hh4 PE=3 SV=3[more]
H4_EUCGL8.208e-2695.24Histone H4 OS=Eucalyptus globulus PE=3 SV=3[more]
H4_CHEMJ8.208e-2695.24Histone H4 OS=Chelidonium majus PE=3 SV=3[more]
H4_ARATH8.208e-2695.24Histone H4 OS=Arabidopsis thaliana GN=At1g07660 PE... [more]
H42_WHEAT8.208e-2695.24Histone H4 variant TH091 OS=Triticum aestivum PE=3... [more]
H41_WHEAT8.208e-2695.24Histone H4 variant TH011 OS=Triticum aestivum PE=3... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS13-C1-001-023-H05-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY757478 ID=EY757478; Name=EY757478; organism=Citrus sinensis; type=EST; length=393bp
TTCGTCGACCCCGCGTCCGGCTCGTATTTGCGGAGTCAAGCGTATCAGCG
GCTTGATCTACGAGGAGACACGTGGCGTCCTGAAGATATTCTTGGAGAAC
GTCATCCGTGACGCCGTGACCTACACTGAGCACGCCAGGAGAAAGACCGT
GACCGCGATGGACGTCGTTTACGCTCTCAAGAGGCAGGGCAGGACTCTTT
ATGGATTTGGGGGTTAATTGTCTTAGGGTTCTGGAATTAAATGTTAATAG
ATCTTGACTCTAGATCTTGATCTGGTAGATGGGGCTCTTAGTAGTTTGTT
ATTAGGTTGCTGCTTTGTAATTCTATCAAGTTAAATCTTATCTTTATATT
TGAGGCAATATAGAACTGTTTTCTTTGAAAAAAAAAAAAAAAA
back to top