CX286782

Overview
NameCX286782
Unique NameCX286782
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length558
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15373 contig Ccv1_Contig15373:381..938. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX286782 vs. ExPASy Swiss-Prot
Match: IDHC_MICME (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Microtus mexicanus GN=IDH1 PE=2 SV=1)

HSP 1 Score: 277.715 bits (709), Expect = 2.639e-74
Identity = 130/185 (70.27%), Postives = 149/185 (80.54%), Query Frame = 1 
Query:    1 KCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVA 555
            KCATITPDE RV+EF LKQMWKSPNGTIRNIL GTVFRE IICKN+PRL+ GW KPI IGRHA+GDQYRATD V+ GPGK+++ F P+   +K    V++F   GGVA+ MYN D+SI  FA +S   A  K WPLYLSTKNTILKKYDGRFKDIFQE+Y+  +KS+FEA  IWYEHRLIDDMVA
Sbjct:   72 KCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRLVTGWVKPIIIGRHAYGDQYRATDFVVPGPGKVEITFTPKDGSQKVTYLVHSFEEGGGVAMGMYNQDKSIEDFAHSSFQMALSKGWPLYLSTKNTILKKYDGRFKDIFQEIYDKQYKSQFEAQKIWYEHRLIDDMVA 256
[Close]
BLAST of CX286782 vs. ExPASy Swiss-Prot
Match: IDHC_HUMAN (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Homo sapiens GN=IDH1 PE=1 SV=2)

HSP 1 Score: 277.715 bits (709), Expect = 2.639e-74
Identity = 130/185 (70.27%), Postives = 148/185 (80.00%), Query Frame = 1 
Query:    1 KCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVA 555
            KCATITPDE RV+EF LKQMWKSPNGTIRNIL GTVFRE IICKN+PRL+ GW KPI IGRHA+GDQYRATD V+ GPGK+++ + P    +K    V+NF   GGVA+ MYN D+SI  FA +S   A  K WPLYLSTKNTILKKYDGRFKDIFQE+Y+  +KS+FEA  IWYEHRLIDDMVA
Sbjct:   72 KCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRLVSGWVKPIIIGRHAYGDQYRATDFVVPGPGKVEITYTPSDGTQKVTYLVHNFEEGGGVAMGMYNQDKSIEDFAHSSFQMALSKGWPLYLSTKNTILKKYDGRFKDIFQEIYDKQYKSQFEAQKIWYEHRLIDDMVA 256
[Close]
BLAST of CX286782 vs. ExPASy Swiss-Prot
Match: IDHC_MICOH (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Microtus ochrogaster GN=IDH1 PE=3 SV=1)

HSP 1 Score: 276.559 bits (706), Expect = 5.879e-74
Identity = 129/185 (69.73%), Postives = 149/185 (80.54%), Query Frame = 1 
Query:    1 KCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVA 555
            KCATITPDE RV+EF LKQMWKSPNGTIRNIL GTVFRE IICKN+PRL+ GW KPI IGRHA+GDQYRATD V+ GPGK+++ + P+   +K    V++F   GGVA+ MYN D+SI  FA +S   A  K WPLYLSTKNTILKKYDGRFKDIFQE+Y+  +KS+FEA  IWYEHRLIDDMVA
Sbjct:   72 KCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRLVTGWVKPIIIGRHAYGDQYRATDFVVPGPGKVEITYTPKDGSQKVTYLVHSFEEGGGVAMGMYNQDKSIEDFAHSSFQMALSKGWPLYLSTKNTILKKYDGRFKDIFQEIYDKQYKSQFEAQKIWYEHRLIDDMVA 256
[Close]
BLAST of CX286782 vs. ExPASy Swiss-Prot
Match: IDHP_MOUSE (Isocitrate dehydrogenase [NADP], mitochondrial OS=Mus musculus GN=Idh2 PE=1 SV=3)

HSP 1 Score: 276.174 bits (705), Expect = 7.678e-74
Identity = 131/185 (70.81%), Postives = 148/185 (80.00%), Query Frame = 1 
Query:    1 KCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVA 555
            KCATITPDEARV+EF LK+MWKSPNGTIRNIL GTVFREPIICKN+PRL+PGWTKPI IGRHA GDQY+ATD V+   G  KLVF P+      E EVYNF   GGV + MYNTDESI  FA +    + QKKWPLYLSTKNTILK YDGRFKDIFQE+++ ++K+ F+   IWYEHRLIDDMVA
Sbjct:  112 KCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPITIGRHAHGDQYKATDFVVDRAGTFKLVFTPKDGSSAKEWEVYNFPA-GGVGMGMYNTDESISGFAHSCFQYSIQKKWPLYLSTKNTILKAYDGRFKDIFQEIFDKHYKTDFDKNKIWYEHRLIDDMVA 295
[Close]
BLAST of CX286782 vs. ExPASy Swiss-Prot
Match: IDHP_PIG (Isocitrate dehydrogenase [NADP], mitochondrial (Fragment) OS=Sus scrofa GN=IDH2 PE=1 SV=1)

HSP 1 Score: 275.789 bits (704), Expect = 1.003e-73
Identity = 130/185 (70.27%), Postives = 148/185 (80.00%), Query Frame = 1 
Query:    1 KCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVA 555
            KCATITPDEARV+EF LK+MWKSPNGTIRNIL GTVFREPIICKN+PRL+PGWTKPI IGRHA GDQY+ATD V+   G  K+VF P+      + EVYNF   GGV + MYNTDESI  FA +    A QKKWPLY+STKNTILK YDGRFKDIFQE++E ++K+ F+   IWYEHRLIDDMVA
Sbjct:   81 KCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPITIGRHAHGDQYKATDFVVDRAGTFKIVFTPKDGSSAKQWEVYNFPA-GGVGMGMYNTDESISGFAHSCFQYAIQKKWPLYMSTKNTILKAYDGRFKDIFQEIFEKHYKTDFDKYKIWYEHRLIDDMVA 264
[Close]
BLAST of CX286782 vs. ExPASy Swiss-Prot
Match: IDHP_RAT (Isocitrate dehydrogenase [NADP], mitochondrial OS=Rattus norvegicus GN=Idh2 PE=1 SV=2)

HSP 1 Score: 274.633 bits (701), Expect = 2.234e-73
Identity = 130/185 (70.27%), Postives = 148/185 (80.00%), Query Frame = 1 
Query:    1 KCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVA 555
            KCATITPDEARV+EF LK+MWKSPNGTIRNIL GTVFREPIICKN+PRL+PGWTKPI IGRHA GDQY+ATD V+   G  KLVF P+      E EVYNF   GGV + MYNTDESI  FA +    + QKKWPLYLSTKNTI+K YDGRFKDIFQE+++ ++K+ F+   IWYEHRLIDDMVA
Sbjct:  112 KCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPITIGRHAHGDQYKATDFVVDRAGMFKLVFTPKDGSGAKEWEVYNFPA-GGVGMGMYNTDESISGFAHSCFQYSIQKKWPLYLSTKNTIMKAYDGRFKDIFQEIFDKHYKTDFDKNKIWYEHRLIDDMVA 295
[Close]
BLAST of CX286782 vs. ExPASy Swiss-Prot
Match: IDHP_BOVIN (Isocitrate dehydrogenase [NADP], mitochondrial OS=Bos taurus GN=IDH2 PE=1 SV=2)

HSP 1 Score: 274.248 bits (700), Expect = 2.918e-73
Identity = 130/185 (70.27%), Postives = 148/185 (80.00%), Query Frame = 1 
Query:    1 KCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVA 555
            KCATITPDEARV+EF LK+MWKSPNGTIRNIL GTVFREPIICKN+PRL+PGWTKPI IGRHA GDQY+ATD V+   G  K+VF P+      E EVYNF   GGV + MYNTDESI  FA +    A QKKWPLY+STKNTILK YDGRFKDIFQ ++E ++K++F+   IWYEHRLIDDMVA
Sbjct:  112 KCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPITIGRHAHGDQYKATDFVVDRAGTFKVVFTPKDGSGPKEWEVYNFPA-GGVGMGMYNTDESISGFAHSCFQYAIQKKWPLYMSTKNTILKAYDGRFKDIFQAIFEKHYKTEFDKHKIWYEHRLIDDMVA 295
[Close]
BLAST of CX286782 vs. ExPASy Swiss-Prot
Match: IDHP_MACFA (Isocitrate dehydrogenase [NADP], mitochondrial OS=Macaca fascicularis GN=IDH2 PE=2 SV=1)

HSP 1 Score: 273.092 bits (697), Expect = 6.500e-73
Identity = 130/185 (70.27%), Postives = 147/185 (79.46%), Query Frame = 1 
Query:    1 KCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVA 555
            KCATITPDEARV+EF LK+MWKSPNGTIRNIL GTVFREPIICKN+PRL+PGWTKPI IGRHA GDQY+ATD V    G  K+VF P+      E EVYNF   GGV + MYNTDESI  FA +    A QKKWPLY+STKNTILK YDGRFKDIFQE+++ ++K+ F+   IWYEHRLIDDMVA
Sbjct:  112 KCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPITIGRHAHGDQYKATDFVADRAGTFKMVFTPKDGSGVKEWEVYNFPA-GGVGMGMYNTDESISGFAHSCFQYAIQKKWPLYMSTKNTILKAYDGRFKDIFQEIFDKHYKTDFDKNKIWYEHRLIDDMVA 295
[Close]
BLAST of CX286782 vs. ExPASy Swiss-Prot
Match: IDHP_HUMAN (Isocitrate dehydrogenase [NADP], mitochondrial OS=Homo sapiens GN=IDH2 PE=1 SV=2)

HSP 1 Score: 273.092 bits (697), Expect = 6.500e-73
Identity = 130/185 (70.27%), Postives = 147/185 (79.46%), Query Frame = 1 
Query:    1 KCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVA 555
            KCATITPDEARV+EF LK+MWKSPNGTIRNIL GTVFREPIICKN+PRL+PGWTKPI IGRHA GDQY+ATD V    G  K+VF P+      E EVYNF   GGV + MYNTDESI  FA +    A QKKWPLY+STKNTILK YDGRFKDIFQE+++ ++K+ F+   IWYEHRLIDDMVA
Sbjct:  112 KCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPITIGRHAHGDQYKATDFVADRAGTFKMVFTPKDGSGVKEWEVYNFPA-GGVGMGMYNTDESISGFAHSCFQYAIQKKWPLYMSTKNTILKAYDGRFKDIFQEIFDKHYKTDFDKNKIWYEHRLIDDMVA 295
[Close]
BLAST of CX286782 vs. ExPASy Swiss-Prot
Match: IDHC_MOUSE (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Mus musculus GN=Idh1 PE=1 SV=1)

HSP 1 Score: 272.322 bits (695), Expect = 1.109e-72
Identity = 128/185 (69.19%), Postives = 148/185 (80.00%), Query Frame = 1 
Query:    1 KCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVA 555
            KCATITPDE RV+EF LKQMWKSPNGTIRNIL GTVFRE IICKN+PRL+ GW KPI IGRHA+GDQYRATD V+ GPGK+++ + P+   +K    V++F   GGVA+ MYN D+SI  FA +S   A  K WPLYLSTKNTILKKYDGRFKDIFQE+Y+  +KS+FEA  I YEHRLIDDMVA
Sbjct:   72 KCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRLVTGWVKPIIIGRHAYGDQYRATDFVVPGPGKVEITYTPKDGTQKVTYMVHDFEEGGGVAMGMYNQDKSIEDFAHSSFQMALSKGWPLYLSTKNTILKKYDGRFKDIFQEIYDKKYKSQFEAQNICYEHRLIDDMVA 256
The following BLAST results are available for this feature:
BLAST of CX286782 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
IDHC_MICME2.639e-7470.27Isocitrate dehydrogenase [NADP] cytoplasmic OS=Mic... [more]
IDHC_HUMAN2.639e-7470.27Isocitrate dehydrogenase [NADP] cytoplasmic OS=Hom... [more]
IDHC_MICOH5.879e-7469.73Isocitrate dehydrogenase [NADP] cytoplasmic OS=Mic... [more]
IDHP_MOUSE7.678e-7470.81Isocitrate dehydrogenase [NADP], mitochondrial OS=... [more]
IDHP_PIG1.003e-7370.27Isocitrate dehydrogenase [NADP], mitochondrial (Fr... [more]
IDHP_RAT2.234e-7370.27Isocitrate dehydrogenase [NADP], mitochondrial OS=... [more]
IDHP_BOVIN2.918e-7370.27Isocitrate dehydrogenase [NADP], mitochondrial OS=... [more]
IDHP_MACFA6.500e-7370.27Isocitrate dehydrogenase [NADP], mitochondrial OS=... [more]
IDHP_HUMAN6.500e-7370.27Isocitrate dehydrogenase [NADP], mitochondrial OS=... [more]
IDHC_MOUSE1.109e-7269.19Isocitrate dehydrogenase [NADP] cytoplasmic OS=Mus... [more]

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Properties
Property NameValue
Genbank descriptionC01001A02Rv Veg1 Citrus clementina cDNA clone C01001A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286782 ID=CX286782; Name=CX286782; organism=Citrus clementina; type=EST; length=558bp
AAGTGTGCTACTATTACTCCAGATGAAGCTCGTGTCAAGGAATTTGTCTT
GAAACAGATGTGGAAGAGTCCAAATGGGACAATCAGGAATATTTTGAATG
GCACTGTTTTCAGAGAACCAATCATTTGCAAAAATGTCCCTCGGCTTATT
CCAGGCTGGACAAAGCCCATATGCATTGGCAGGCATGCTTTTGGTGATCA
ATATCGAGCAACTGATACAGTTATTCAAGGACCTGGCAAACTTAAATTGG
TGTTTGTACCAGAGGGAAAAGATGAGAAGACAGAGTTGGAGGTTTACAAC
TTTACGGGTGAGGGTGGAGTTGCATTGTCCATGTATAACACTGATGAGTC
CATCCGAGCTTTTGCTGAGGCTTCTATGAACACTGCCTATCAGAAGAAGT
GGCCACTCTATCTTAGTACAAAAAACACTATCCTTAAGAAGTATGATGGA
AGATTCAAAGACATATTTCAAGAGGTTTATGAGGCAAACTGGAAGTCAAA
GTTTGAAGCTGCTGGCATATGGTATGAACATCGTCTCATTGATGATATGG
TAGCTTAT
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