CX286782

Overview
NameCX286782
Unique NameCX286782
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length558
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX286782 vs. ExPASy Swiss-Prot
Match: IDHC_TOBAC (Isocitrate dehydrogenase [NADP] OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 363.999 bits (933), Expect = 2.800e-100
Identity = 170/186 (91.40%), Postives = 177/186 (95.16%), Query Frame = 1
Query:    1 KCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAY 558
            KCATITPDEARVKEF LK MW+SPNGTIRNILNGTVFREPI+CKN+PRL+PGWTKPICIGRHAFGDQYRATDTVIQG GKLKLVFVPEG DEKTE EVYNFTG GGVALSMYNTDES+R+FAEASMN AYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSK+E AGIWYEHRLIDDM AY
Sbjct:   74 KCATITPDEARVKEFNLKSMWRSPNGTIRNILNGTVFREPIMCKNIPRLVPGWTKPICIGRHAFGDQYRATDTVIQGAGKLKLVFVPEGTDEKTEFEVYNFTGAGGVALSMYNTDESVRSFAEASMNMAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKYEEAGIWYEHRLIDDMAAY 259          
BLAST of CX286782 vs. ExPASy Swiss-Prot
Match: IDHC_SOLTU (Isocitrate dehydrogenase [NADP] OS=Solanum tuberosum GN=ICDH-1 PE=2 SV=1)

HSP 1 Score: 362.844 bits (930), Expect = 6.237e-100
Identity = 169/186 (90.86%), Postives = 178/186 (95.70%), Query Frame = 1
Query:    1 KCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAY 558
            KCATITPDEARVKEF LK MW+SPNGTIRNILNGTVFREPI+CKN+PRL+PGWTKPICIGRHAFGDQYRATDTVI+G GKLKLVFVPEG DEKTE EVYNFTG GGVALSMYNTDES+R+FAEASMN A+QKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSK+E AGIWYEHRLIDDMVAY
Sbjct:   74 KCATITPDEARVKEFNLKSMWRSPNGTIRNILNGTVFREPIMCKNIPRLVPGWTKPICIGRHAFGDQYRATDTVIKGAGKLKLVFVPEGSDEKTEFEVYNFTGAGGVALSMYNTDESVRSFAEASMNMAFQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKYEEAGIWYEHRLIDDMVAY 259          
BLAST of CX286782 vs. ExPASy Swiss-Prot
Match: IDHP_MEDSA (Isocitrate dehydrogenase [NADP], chloroplastic (Fragment) OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 357.451 bits (916), Expect = 2.620e-98
Identity = 168/186 (90.32%), Postives = 178/186 (95.70%), Query Frame = 1
Query:    1 KCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAY 558
            KCATITPDEARVKEF LK MW+SPNGTIRNILNGTVFREPIICKN+PRLIPGWTKPICIGRHAFGDQYRATD+VI+GPGKLKLVFVPEG+ E T+LEVYNFTGEGGVAL+MYNTDESIR+FAEASM  A +KKWPLYLSTKNTILKKYDGRFKDIFQEVYEA WKSK+EAAGIWYEHRLIDDMVAY
Sbjct:   95 KCATITPDEARVKEFGLKSMWRSPNGTIRNILNGTVFREPIICKNIPRLIPGWTKPICIGRHAFGDQYRATDSVIKGPGKLKLVFVPEGQGETTDLEVYNFTGEGGVALAMYNTDESIRSFAEASMAVALEKKWPLYLSTKNTILKKYDGRFKDIFQEVYEAGWKSKYEAAGIWYEHRLIDDMVAY 280          
BLAST of CX286782 vs. ExPASy Swiss-Prot
Match: IDHC_SOYBN (Isocitrate dehydrogenase [NADP] OS=Glycine max GN=IDH1 PE=2 SV=2)

HSP 1 Score: 353.984 bits (907), Expect = 2.897e-97
Identity = 166/186 (89.25%), Postives = 178/186 (95.70%), Query Frame = 1
Query:    1 KCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAY 558
            KCATITPDEARVKEF LK MWKSPNGTIRNILNGTVFREPI+CKN+PRL+PGWTK ICIGRHAFGDQYRATDTVI+G GKLKLVFVPEG+ E+TE EV+NFTGEGGV+L+MYNTDESIR+FAEASM TA +KKWPLYLSTKNTILKKYDGRFKDIFQEVYEA+WKSKFEAAGIWYEHRLIDDMVAY
Sbjct:   75 KCATITPDEARVKEFGLKSMWKSPNGTIRNILNGTVFREPILCKNIPRLVPGWTKAICIGRHAFGDQYRATDTVIKGAGKLKLVFVPEGQGEETEFEVFNFTGEGGVSLAMYNTDESIRSFAEASMATALEKKWPLYLSTKNTILKKYDGRFKDIFQEVYEASWKSKFEAAGIWYEHRLIDDMVAY 260          
BLAST of CX286782 vs. ExPASy Swiss-Prot
Match: IDHP_SCHPO (Probable isocitrate dehydrogenase [NADP], mitochondrial OS=Schizosaccharomyces pombe GN=idp1 PE=2 SV=1)

HSP 1 Score: 286.574 bits (732), Expect = 5.681e-77
Identity = 137/186 (73.66%), Postives = 154/186 (82.80%), Query Frame = 1
Query:    1 KCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGK-DEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVA 555
            KCATITPDEARVKE+ LK+MWKSPNGTIRNILNGTVFREPI+ KN+P+ IPGWT PICIGRHAFGDQY++TD V  GPGKL+L F P+G    K    VY F G  GVA+SMYNTD+SIR FA +S   A QKK PLYLSTKNTILKKYDGRFKD FQEVYE+++K KFE  G+WY+HRLIDDMVA
Sbjct:   82 KCATITPDEARVKEYNLKKMWKSPNGTIRNILNGTVFREPILIKNIPKYIPGWTNPICIGRHAFGDQYKSTDLVASGPGKLELSFTPKGNPSAKETYNVYEFNG-SGVAMSMYNTDDSIRGFAHSSFQMALQKKMPLYLSTKNTILKKYDGRFKDTFQEVYESDYKQKFEELGLWYQHRLIDDMVA 266          
BLAST of CX286782 vs. ExPASy Swiss-Prot
Match: IDHC_BOVIN (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Bos taurus GN=IDH1 PE=2 SV=1)

HSP 1 Score: 282.337 bits (721), Expect = 1.071e-75
Identity = 132/185 (71.35%), Postives = 149/185 (80.54%), Query Frame = 1
Query:    1 KCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVA 555
            KCATITPDE RV+EF LKQMWKSPNGTIRNIL GTVFRE IICKN+PRL+ GW KPI IGRHA+GDQYRATD V+ GPGK+++ + P     KT   V+NFT  GGVA+ MYN D+SI  FA +S   A  K WPLYLSTKNTILKKYDGRFKDIFQE+Y+  +KS+FEA  IWYEHRLIDDMVA
Sbjct:   72 KCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRLVSGWVKPIIIGRHAYGDQYRATDFVVPGPGKVEISYTPSDGSPKTVYLVHNFTESGGVAMGMYNQDKSIEDFAHSSFQMALSKNWPLYLSTKNTILKKYDGRFKDIFQEIYDKQYKSEFEAQNIWYEHRLIDDMVA 256          
BLAST of CX286782 vs. ExPASy Swiss-Prot
Match: IDHC_SHEEP (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Ovis aries GN=IDH1 PE=2 SV=1)

HSP 1 Score: 281.182 bits (718), Expect = 2.387e-75
Identity = 131/185 (70.81%), Postives = 149/185 (80.54%), Query Frame = 1
Query:    1 KCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVA 555
            KCATITPDE RV+EF LKQMWKSPNGTIRNIL GTVFRE IICKN+PRL+ GW KPI IGRHA+GDQYRATD V+ GPGK+++ + P     KT   V+NFT  GGVA+ M+N D+SI  FA +S   A  K WPLYLSTKNTILKKYDGRFKDIFQE+Y+  +KS+FEA  IWYEHRLIDDMVA
Sbjct:   72 KCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRLVSGWVKPIIIGRHAYGDQYRATDFVVPGPGKVEICYTPSDGSPKTVYLVHNFTESGGVAMGMFNQDKSIEDFAHSSFQMALSKNWPLYLSTKNTILKKYDGRFKDIFQEIYDKQYKSQFEAQNIWYEHRLIDDMVA 256          
BLAST of CX286782 vs. ExPASy Swiss-Prot
Match: IDHC_DICDI (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Dictyostelium discoideum GN=idhC PE=1 SV=1)

HSP 1 Score: 281.182 bits (718), Expect = 2.387e-75
Identity = 131/186 (70.43%), Postives = 150/186 (80.65%), Query Frame = 1
Query:    1 KCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAY 558
            KCATITPDEARV EF LK+MWKSPNGTIRN L GT+FREPI+CKNVPRL+  W K I IGRHAFGDQYRATD V++G GKL+L + P       + +V++F  +GGVAL MYNTD SI+ FA A  N +  KKWPLYLSTKNTILK+YDGRFKDIFQE+YE  +K KF+ AGIWYEHRLIDDMVAY
Sbjct:   73 KCATITPDEARVTEFGLKEMWKSPNGTIRNTLGGTLFREPIVCKNVPRLVTCWNKSIVIGRHAFGDQYRATDFVVKGAGKLELTYTPADGSAPQKFQVFDFPSDGGVALGMYNTDASIKEFAYACFNFSLDKKWPLYLSTKNTILKRYDGRFKDIFQEIYEREYKVKFDTAGIWYEHRLIDDMVAY 258          
BLAST of CX286782 vs. ExPASy Swiss-Prot
Match: IDHC_RAT (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Rattus norvegicus GN=Idh1 PE=1 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 2.020e-74
Identity = 130/185 (70.27%), Postives = 149/185 (80.54%), Query Frame = 1
Query:    1 KCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVA 555
            KCATITPDE RV+EF LKQMWKSPNGTIRNIL GTVFRE IICKN+PRL+ GW KPI IGRHA+GDQYRATD V+ GPGK+++ + P+   +K    V++F   GGVA+ MYN D+SI  FA +S   A  K WPLYLSTKNTILKKYDGRFKDIFQE+Y+  +KSKFEA  IWYEHRLIDDMVA
Sbjct:   72 KCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRLVTGWVKPIIIGRHAYGDQYRATDFVVPGPGKVEITYTPKDGSQKVTYLVHDFEEGGGVAMGMYNQDKSIEDFAHSSFQMALSKGWPLYLSTKNTILKKYDGRFKDIFQEIYDKQYKSKFEAQKIWYEHRLIDDMVA 256          
BLAST of CX286782 vs. ExPASy Swiss-Prot
Match: IDHC_PONAB (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Pongo abelii GN=IDH1 PE=2 SV=2)

HSP 1 Score: 277.715 bits (709), Expect = 2.639e-74
Identity = 130/185 (70.27%), Postives = 148/185 (80.00%), Query Frame = 1
Query:    1 KCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVA 555
            KCATITPDE RV+EF LKQMWKSPNGTIRNIL GTVFRE IICKN+PRL+ GW KPI IGRHA+GDQYRATD V+ GPGK+++ + P    +K    V+NF   GGVA+ MYN D+SI  FA +S   A  K WPLYLSTKNTILKKYDGRFKDIFQE+Y+  +KS+FEA  IWYEHRLIDDMVA
Sbjct:   72 KCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRLVSGWVKPIIIGRHAYGDQYRATDFVVPGPGKVEITYTPSDGTQKVTYLVHNFEEGGGVAMGMYNQDKSIEDFAHSSFQMALSKGWPLYLSTKNTILKKYDGRFKDIFQEIYDKQYKSQFEARKIWYEHRLIDDMVA 256          
The following BLAST results are available for this feature:
BLAST of CX286782 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
IDHC_TOBAC2.800e-10091.40Isocitrate dehydrogenase [NADP] OS=Nicotiana tabac... [more]
IDHC_SOLTU6.237e-10090.86Isocitrate dehydrogenase [NADP] OS=Solanum tuberos... [more]
IDHP_MEDSA2.620e-9890.32Isocitrate dehydrogenase [NADP], chloroplastic (Fr... [more]
IDHC_SOYBN2.897e-9789.25Isocitrate dehydrogenase [NADP] OS=Glycine max GN=... [more]
IDHP_SCHPO5.681e-7773.66Probable isocitrate dehydrogenase [NADP], mitochon... [more]
IDHC_BOVIN1.071e-7571.35Isocitrate dehydrogenase [NADP] cytoplasmic OS=Bos... [more]
IDHC_SHEEP2.387e-7570.81Isocitrate dehydrogenase [NADP] cytoplasmic OS=Ovi... [more]
IDHC_DICDI2.387e-7570.43Isocitrate dehydrogenase [NADP] cytoplasmic OS=Dic... [more]
IDHC_RAT2.020e-7470.27Isocitrate dehydrogenase [NADP] cytoplasmic OS=Rat... [more]
IDHC_PONAB2.639e-7470.27Isocitrate dehydrogenase [NADP] cytoplasmic OS=Pon... [more]

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Properties
Property NameValue
Genbank descriptionC01001A02Rv Veg1 Citrus clementina cDNA clone C01001A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286782 ID=CX286782; Name=CX286782; organism=Citrus clementina; type=EST; length=558bp
AAGTGTGCTACTATTACTCCAGATGAAGCTCGTGTCAAGGAATTTGTCTT
GAAACAGATGTGGAAGAGTCCAAATGGGACAATCAGGAATATTTTGAATG
GCACTGTTTTCAGAGAACCAATCATTTGCAAAAATGTCCCTCGGCTTATT
CCAGGCTGGACAAAGCCCATATGCATTGGCAGGCATGCTTTTGGTGATCA
ATATCGAGCAACTGATACAGTTATTCAAGGACCTGGCAAACTTAAATTGG
TGTTTGTACCAGAGGGAAAAGATGAGAAGACAGAGTTGGAGGTTTACAAC
TTTACGGGTGAGGGTGGAGTTGCATTGTCCATGTATAACACTGATGAGTC
CATCCGAGCTTTTGCTGAGGCTTCTATGAACACTGCCTATCAGAAGAAGT
GGCCACTCTATCTTAGTACAAAAAACACTATCCTTAAGAAGTATGATGGA
AGATTCAAAGACATATTTCAAGAGGTTTATGAGGCAAACTGGAAGTCAAA
GTTTGAAGCTGCTGGCATATGGTATGAACATCGTCTCATTGATGATATGG
TAGCTTAT
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