CX286782

Overview
NameCX286782
Unique NameCX286782
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length558
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15373 contig Ccv1_Contig15373:381..938. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX286782 vs. ExPASy Swiss-Prot
Match: IDHP_ASPNG (Isocitrate dehydrogenase [NADP], mitochondrial OS=Aspergillus niger GN=icdA PE=2 SV=1)

HSP 1 Score: 269.626 bits (688), Expect = 7.186e-72
Identity = 131/185 (70.81%), Postives = 151/185 (81.62%), Query Frame = 1
Query:    1 KCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVA 555
            KCATITPDEARV+EF LK+MW SPNGTIRNIL GTVFREPII   +PRL+PGW KPI IGRHAFGDQYRATD VI GPGKL+LV+ P   + +T ++VY+F G GG+A + YNTDESIR FA AS   A  K  PLY+STKNTILK+YDGRFKDIFQE+YE+ ++  FEA  +WYEHRLIDDMVA
Sbjct:  161 KCATITPDEARVEEFKLKKMWLSPNGTIRNILGGTVFREPIIIPAIPRLVPGWNKPIIIGRHAFGDQYRATDRVIPGPGKLELVYTPVNGEPET-VKVYDFQG-GGIAQTQYNTDESIRGFAHASFQMALLKGLPLYMSTKNTILKRYDGRFKDIFQEIYESTYQKDFEAKNLWYEHRLIDDMVA 343          
BLAST of CX286782 vs. ExPASy Swiss-Prot
Match: IDHP_DICDI (Isocitrate dehydrogenase [NADP], mitochondrial OS=Dictyostelium discoideum GN=idhM PE=3 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 9.385e-72
Identity = 129/186 (69.35%), Postives = 150/186 (80.65%), Query Frame = 1
Query:    1 KCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAY 558
            KCATITPDEARVKEF LK+MWKSPNGTIRNIL+GTVFR PIICKN+P L+PGW KPI IGRHA GDQY+ATD V+ GPGKL+++F P  + E  +  +Y+F G  GVA+ MYNT  SI AFA +    A  KK+PLYLSTKNTILKKYDG+FKDIFQE+YE  + +KF   GIWYEHRLIDDMVA+
Sbjct:   95 KCATITPDEARVKEFGLKEMWKSPNGTIRNILDGTVFRGPIICKNLPLLVPGWKKPIIIGRHAHGDQYKATDFVVNGPGKLEMIFTP-SQGEPIKKVIYDFKG-SGVAMGMYNTTSSITAFAHSCFQYAIDKKYPLYLSTKNTILKKYDGQFKDIFQEIYEREYSTKFGELGIWYEHRLIDDMVAF 278          
BLAST of CX286782 vs. ExPASy Swiss-Prot
Match: IDH1_CANTR (Isocitrate dehydrogenase [NADP], mitochondrial OS=Candida tropicalis GN=IDP1 PE=3 SV=1)

HSP 1 Score: 262.307 bits (669), Expect = 1.147e-69
Identity = 129/185 (69.73%), Postives = 146/185 (78.92%), Query Frame = 1
Query:    1 KCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVA 555
            KCATITPDEARVKEF LK+MW SPNGTIRNIL GTVFRE II   +PRLIPGW KPI IGRHAFGDQY+ATD VI  PG+L+L F P    E    +VY++TG  GV L+MYNTDESI  FA AS   A  K  PLY+STKNTILKKYDGRFKDIFQ++YE ++ ++FE  G+WYEHRLIDDMVA
Sbjct:   98 KCATITPDEARVKEFHLKKMWLSPNGTIRNILGGTVFRESIIIPCIPRLIPGWEKPIVIGRHAFGDQYKATDLVINEPGRLELRFTPASGGEAQTQKVYDYTGP-GVGLAMYNTDESITGFAHASFKMALAKGLPLYMSTKNTILKKYDGRFKDIFQQIYEQDYAAEFEKQGLWYEHRLIDDMVA 281          
BLAST of CX286782 vs. ExPASy Swiss-Prot
Match: IDHP_YEAST (Isocitrate dehydrogenase [NADP], mitochondrial OS=Saccharomyces cerevisiae GN=IDP1 PE=1 SV=1)

HSP 1 Score: 261.536 bits (667), Expect = 1.957e-69
Identity = 131/187 (70.05%), Postives = 148/187 (79.14%), Query Frame = 1
Query:    1 KCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKD--EKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVA 555
            KCATITPDEARVKEF L +MWKSPNGTIRNIL GTVFREPI+   +PRL+P W KPI IGRHA GDQY+ATDT+I GPG L+LV+ P      +   L+VY++ G  GVA++MYNTDESI  FA +S   A  KK  L+LSTKNTILKKYDGRFKDIFQEVYEA +KSKFE  GI YEHRLIDDMVA
Sbjct:   88 KCATITPDEARVKEFNLHKMWKSPNGTIRNILGGTVFREPIVIPRIPRLVPRWEKPIIIGRHAHGDQYKATDTLIPGPGSLELVYKPSDPTTAQPQTLKVYDYKG-SGVAMAMYNTDESIEGFAHSSFKLAIDKKLNLFLSTKNTILKKYDGRFKDIFQEVYEAQYKSKFEQLGIHYEHRLIDDMVA 273          
BLAST of CX286782 vs. ExPASy Swiss-Prot
Match: IDH_SPHYA (Isocitrate dehydrogenase [NADP] OS=Sphingomonas yanoikuyae GN=icd PE=3 SV=1)

HSP 1 Score: 256.144 bits (653), Expect = 8.222e-68
Identity = 126/185 (68.11%), Postives = 146/185 (78.92%), Query Frame = 1
Query:    1 KCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVA 555
            KCATITPDEARV+EF LK+MWKSPNGTIRNIL G VFREPI+ KNVPRL+PGWT PI +GRHAFGDQY+ATD  + G G L + +V     E+ E EV+ F    GVA+ MYN DESIR FA+AS N    + WP+YLSTKNTILK YDGRFKD+FQEV++A +  KF+AAGI YEHRLIDDMVA
Sbjct:   72 KCATITPDEARVEEFGLKKMWKSPNGTIRNILGGVVFREPIVIKNVPRLVPGWTDPIVVGRHAFGDQYKATDFKVPGAGTLTMKWVGT-NGEELEYEVFEFP-SAGVAMGMYNLDESIRDFAKASFNYGLNRGWPVYLSTKNTILKAYDGRFKDLFQEVFDAEFADKFKAAGIVYEHRLIDDMVA 254          
BLAST of CX286782 vs. ExPASy Swiss-Prot
Match: IDHC_YEAST (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Saccharomyces cerevisiae GN=IDP2 PE=1 SV=2)

HSP 1 Score: 256.144 bits (653), Expect = 8.222e-68
Identity = 118/185 (63.78%), Postives = 147/185 (79.46%), Query Frame = 1
Query:    1 KCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVA 555
            KCATITPDEARV+EF LK+MWKSPNGTIRNIL GTVFREPII   +PRL+P W KPI IGRHAFGDQY+ATD ++   G+L+LV+  +      +L+V+++   GGVA+ MYNT +SI  FA+AS   A ++K PLY +TKNTILKKYDG+FKD+F+ +Y  ++K KFE+ GIWYEHRLIDDMVA
Sbjct:   72 KCATITPDEARVEEFHLKKMWKSPNGTIRNILGGTVFREPIIIPRIPRLVPQWEKPIIIGRHAFGDQYKATDVIVPEEGELRLVYKSKSGTHDVDLKVFDYPEHGGVAMMMYNTTDSIEGFAKASFELAIERKLPLYSTTKNTILKKYDGKFKDVFEAMYARSYKEKFESLGIWYEHRLIDDMVA 256          
BLAST of CX286782 vs. ExPASy Swiss-Prot
Match: IDH2_CANTR (Isocitrate dehydrogenase [NADP] peroxisomal OS=Candida tropicalis GN=IDP2 PE=1 SV=3)

HSP 1 Score: 254.988 bits (650), Expect = 1.832e-67
Identity = 123/185 (66.49%), Postives = 144/185 (77.84%), Query Frame = 1
Query:    1 KCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVA 555
            KCATITPDEARVKEF LK+MW SPNGT+RN++ GTVFREPI+  N+PR++P W KPI IGRHAFGDQY+ATD VI   G LKLVF P+   E  E  VY F G  GVALSMYNTD SI  FAE+S   A ++K  L+ STKNTILKKYDG+FKDIF+ +Y + +K+K +  GIWYEHRLIDDMVA
Sbjct:   75 KCATITPDEARVKEFNLKKMWLSPNGTLRNVIGGTVFREPIVIDNIPRIVPSWEKPIIIGRHAFGDQYKATDVVIPAAGDLKLVFKPKDGGEVQEFPVYQFDGP-GVALSMYNTDASITDFAESSFQLAIERKLNLFSSTKNTILKKYDGKFKDIFEGLYASKYKTKMDELGIWYEHRLIDDMVA 258          
BLAST of CX286782 vs. ExPASy Swiss-Prot
Match: IDH_MYCTU (Isocitrate dehydrogenase [NADP] OS=Mycobacterium tuberculosis GN=icd PE=3 SV=1)

HSP 1 Score: 250.366 bits (638), Expect = 4.512e-66
Identity = 121/185 (65.41%), Postives = 139/185 (75.14%), Query Frame = 1
Query:    1 KCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVA 555
            KCATITPDEARV+EF LK+MW SPNGTIRNIL GT+FREPI+  NVPRL+PGWTKPI IGRHAFGDQYRAT+  +  PG + L F P         E+ +   +GGV L MYN  ESIR FA AS +     KWP+YLSTKNTILK YDG FKD F+ VYE  +K++FEAAG+ YEHRLIDDMVA
Sbjct:   75 KCATITPDEARVEEFNLKKMWLSPNGTIRNILGGTIFREPIVISNVPRLVPGWTKPIVIGRHAFGDQYRATNFKVDQPGTVTLTFTPADGSAPIVHEMVSIPEDGGVVLGMYNFKESIRDFARASFSYGLNAKWPVYLSTKNTILKAYDGMFKDEFERVYEEEFKAQFEAAGLTYEHRLIDDMVA 259          
BLAST of CX286782 vs. ExPASy Swiss-Prot
Match: IDH_MYCBO (Isocitrate dehydrogenase [NADP] OS=Mycobacterium bovis GN=icd PE=3 SV=1)

HSP 1 Score: 250.366 bits (638), Expect = 4.512e-66
Identity = 121/185 (65.41%), Postives = 139/185 (75.14%), Query Frame = 1
Query:    1 KCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVA 555
            KCATITPDEARV+EF LK+MW SPNGTIRNIL GT+FREPI+  NVPRL+PGWTKPI IGRHAFGDQYRAT+  +  PG + L F P         E+ +   +GGV L MYN  ESIR FA AS +     KWP+YLSTKNTILK YDG FKD F+ VYE  +K++FEAAG+ YEHRLIDDMVA
Sbjct:   75 KCATITPDEARVEEFNLKKMWLSPNGTIRNILGGTIFREPIVISNVPRLVPGWTKPIVIGRHAFGDQYRATNFKVDQPGTVTLTFTPADGSAPIVHEMVSIPEDGGVVLGMYNFKESIRDFARASFSYGLNAKWPVYLSTKNTILKAYDGMFKDEFERVYEEEFKAQFEAAGLTYEHRLIDDMVA 259          
BLAST of CX286782 vs. ExPASy Swiss-Prot
Match: IDHH_YEAST (Isocitrate dehydrogenase [NADP] OS=Saccharomyces cerevisiae GN=IDP3 PE=1 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 1.895e-64
Identity = 116/185 (62.70%), Postives = 143/185 (77.30%), Query Frame = 1
Query:    1 KCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVA 555
            KCATITPDEAR+KEF LK+MWKSPNGTIRNIL GTVFREPII   +PRL+P W KPI IGRHAFGDQYRATD  I+  GKL+L F  +   E  +L+VY F   GG+A++M+NT++SI+ FA+AS   A ++K PL+ +TKNTILK YD +FK IF  +++  +K KF+A  I YEHRLIDDMVA
Sbjct:   72 KCATITPDEARMKEFNLKEMWKSPNGTIRNILGGTVFREPIIIPKIPRLVPHWEKPIIIGRHAFGDQYRATDIKIKKAGKLRLQFSSDDGKENIDLKVYEFPKSGGIAMAMFNTNDSIKGFAKASFELALKRKLPLFFTTKNTILKNYDNQFKQIFDNLFDKEYKEKFQALKITYEHRLIDDMVA 256          
The following BLAST results are available for this feature:
BLAST of CX286782 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
IDHP_ASPNG7.186e-7270.81Isocitrate dehydrogenase [NADP], mitochondrial OS=... [more]
IDHP_DICDI9.385e-7269.35Isocitrate dehydrogenase [NADP], mitochondrial OS=... [more]
IDH1_CANTR1.147e-6969.73Isocitrate dehydrogenase [NADP], mitochondrial OS=... [more]
IDHP_YEAST1.957e-6970.05Isocitrate dehydrogenase [NADP], mitochondrial OS=... [more]
IDH_SPHYA8.222e-6868.11Isocitrate dehydrogenase [NADP] OS=Sphingomonas ya... [more]
IDHC_YEAST8.222e-6863.78Isocitrate dehydrogenase [NADP] cytoplasmic OS=Sac... [more]
IDH2_CANTR1.832e-6766.49Isocitrate dehydrogenase [NADP] peroxisomal OS=Can... [more]
IDH_MYCTU4.512e-6665.41Isocitrate dehydrogenase [NADP] OS=Mycobacterium t... [more]
IDH_MYCBO4.512e-6665.41Isocitrate dehydrogenase [NADP] OS=Mycobacterium b... [more]
IDHH_YEAST1.895e-6462.70Isocitrate dehydrogenase [NADP] OS=Saccharomyces c... [more]

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Properties
Property NameValue
Genbank descriptionC01001A02Rv Veg1 Citrus clementina cDNA clone C01001A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286782 ID=CX286782; Name=CX286782; organism=Citrus clementina; type=EST; length=558bp
AAGTGTGCTACTATTACTCCAGATGAAGCTCGTGTCAAGGAATTTGTCTT
GAAACAGATGTGGAAGAGTCCAAATGGGACAATCAGGAATATTTTGAATG
GCACTGTTTTCAGAGAACCAATCATTTGCAAAAATGTCCCTCGGCTTATT
CCAGGCTGGACAAAGCCCATATGCATTGGCAGGCATGCTTTTGGTGATCA
ATATCGAGCAACTGATACAGTTATTCAAGGACCTGGCAAACTTAAATTGG
TGTTTGTACCAGAGGGAAAAGATGAGAAGACAGAGTTGGAGGTTTACAAC
TTTACGGGTGAGGGTGGAGTTGCATTGTCCATGTATAACACTGATGAGTC
CATCCGAGCTTTTGCTGAGGCTTCTATGAACACTGCCTATCAGAAGAAGT
GGCCACTCTATCTTAGTACAAAAAACACTATCCTTAAGAAGTATGATGGA
AGATTCAAAGACATATTTCAAGAGGTTTATGAGGCAAACTGGAAGTCAAA
GTTTGAAGCTGCTGGCATATGGTATGAACATCGTCTCATTGATGATATGG
TAGCTTAT
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