CX286791
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX286791 vs. ExPASy Swiss-Prot
Match: RRP2_SPIOL (30S ribosomal protein 2, chloroplastic OS=Spinacia oleracea GN=PSRP2 PE=1 SV=1) HSP 1 Score: 141.739 bits (356), Expect = 1.769e-33 Identity = 68/87 (78.16%), Postives = 79/87 (90.80%), Query Frame = 2 Query: 242 ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKPLVQVDL 502 ARR+Y+GNIPRN++NDEL IV+EHGA+E AEV+YDKY+GRSRRF FV MKTVEDANAVIEKLN TEIGGR+IKVNITEKPL +D+ Sbjct: 83 ARRLYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKYSGRSRRFGFVTMKTVEDANAVIEKLNDTEIGGRKIKVNITEKPLEGMDI 169
BLAST of CX286791 vs. ExPASy Swiss-Prot
Match: ROC3_ARATH (31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP31 PE=1 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 5.717e-16 Identity = 38/80 (47.50%), Postives = 54/80 (67.50%), Query Frame = 2 Query: 242 ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEK 481 A RVY+GN+P ++DN L ++ EHG V +A V+YD+ TGRSR F FV M V++ N I L+G + GR I+VN+ E+ Sbjct: 243 AFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEE 322
BLAST of CX286791 vs. ExPASy Swiss-Prot
Match: ROC5_NICSY (33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 1.078e-14 Identity = 35/79 (44.30%), Postives = 54/79 (68.35%), Query Frame = 2 Query: 248 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKP 484 R+Y+GN+P ++ + +L++I E G V E++YD+ T RSR FAFV M +VE+A I +G+++GGR +KVN E P Sbjct: 115 RLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRLFDGSQVGGRTVKVNFPEVP 193
BLAST of CX286791 vs. ExPASy Swiss-Prot
Match: ROC1_ARATH (Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana GN=At2g37220 PE=1 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 4.097e-14 Identity = 34/79 (43.04%), Postives = 52/79 (65.82%), Query Frame = 2 Query: 248 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKP 484 ++++GN+P N+D+ +L ++ + G VE EVIYDK TGRSR F FV M +V + A ++ NG E+ GR ++VN P Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPP 170
BLAST of CX286791 vs. ExPASy Swiss-Prot
Match: ROC4_NICSY (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 1.557e-13 Identity = 35/77 (45.45%), Postives = 49/77 (63.64%), Query Frame = 2 Query: 248 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITE 478 R+Y+GNIP ID+ L ++ EHG V A V+YD+ TGRSR F FV M + + + I L+G + GR I+VN+ E Sbjct: 231 RIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRVNVAE 307 HSP 2 Score: 68.9366 bits (167), Expect = 1.457e-11 Identity = 30/74 (40.54%), Postives = 51/74 (68.92%), Query Frame = 2 Query: 248 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVN 469 ++++GN+P ++D++ L ++ ++ G VE AEVIY++ T +SR F FV M TVE+A +E N ++ GR + VN Sbjct: 137 KLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEMYNRYDVNGRLLTVN 210
BLAST of CX286791 vs. ExPASy Swiss-Prot
Match: ROC2_NICSY (29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 2.033e-13 Identity = 36/79 (45.57%), Postives = 50/79 (63.29%), Query Frame = 2 Query: 248 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKP 484 ++++GN+P ++D+ L + + G VE EVIYDK TGRSR F FV M T E+ A ++ NG EI GR I+VN P Sbjct: 88 KLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAP 166 HSP 2 Score: 68.1662 bits (165), Expect = 2.486e-11 Identity = 31/80 (38.75%), Postives = 51/80 (63.75%), Query Frame = 2 Query: 242 ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEK 481 + RVY+GN+ +D+ L ++ E G V A+V+YD+ +GRSR F FV + ++ N I+ LNG ++ GR I+V+ E+ Sbjct: 206 SNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRVSAAEE 285
BLAST of CX286791 vs. ExPASy Swiss-Prot
Match: ROC1_SPIOL (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 2.656e-13 Identity = 34/74 (45.95%), Postives = 52/74 (70.27%), Query Frame = 2 Query: 248 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVN 469 ++++GN+P ++D+++L I G VE AEVIY++ T RSR F FV M TVE+A +E LNG ++ GR++ VN Sbjct: 56 KLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVELLNGYDMDGRQLTVN 129 HSP 2 Score: 74.3294 bits (181), Expect = 3.468e-13 Identity = 33/78 (42.31%), Postives = 49/78 (62.82%), Query Frame = 2 Query: 248 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEK 481 RVY+GN+P ++D L ++ EHG V A V+ D+ TGRSR F FV M + + N I L+G + GR ++VN+ E+ Sbjct: 150 RVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRVNVAEE 227
BLAST of CX286791 vs. ExPASy Swiss-Prot
Match: ROC2_NICPL (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 1.009e-12 Identity = 35/79 (44.30%), Postives = 50/79 (63.29%), Query Frame = 2 Query: 248 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKP 484 ++++GN+P ++D+ L + + G VE EVIYDK +GRSR F FV M T E+ A ++ NG EI GR I+VN P Sbjct: 89 KLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAP 167 HSP 2 Score: 68.5514 bits (166), Expect = 1.903e-11 Identity = 31/80 (38.75%), Postives = 51/80 (63.75%), Query Frame = 2 Query: 242 ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEK 481 + RVY+GN+ +D+ L ++ E G V A+V+YD+ +GRSR F FV + ++ N I+ LNG ++ GR I+V+ E+ Sbjct: 207 SNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSLNGIDLDGRSIRVSAAEE 286
BLAST of CX286791 vs. ExPASy Swiss-Prot
Match: ROC2_ARATH (29 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP29 PE=1 SV=2) HSP 1 Score: 72.7886 bits (177), Expect = 1.009e-12 Identity = 33/79 (41.77%), Postives = 49/79 (62.03%), Query Frame = 2 Query: 248 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKP 484 ++++GN+ N+D+ +L ++ + G VE EVIYDK TGRSR F FV M T + A ++ NG E GR ++VN P Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGPPP 178
BLAST of CX286791 vs. ExPASy Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 1.009e-12 Identity = 33/79 (41.77%), Postives = 50/79 (63.29%), Query Frame = 2 Query: 248 RVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITEKP 484 ++++GN+P + D+ L ++ + G VE EVIYDK TGRSR F FV M + E+ A ++ NG E+ GR ++VN P Sbjct: 88 KIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPP 166 HSP 2 Score: 71.633 bits (174), Expect = 2.248e-12 Identity = 33/79 (41.77%), Postives = 49/79 (62.03%), Query Frame = 2 Query: 242 ARRVYIGNIPRNIDNDELTKIVQEHGAVEKAEVIYDKYTGRSRRFAFVMMKTVEDANAVIEKLNGTEIGGREIKVNITE 478 + RVY+GN+ +D D L + E G V A+V+YD+ +GRSR F FV + E+ N IE L+G ++ GR I+V+ E Sbjct: 187 SNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAE 265 The following BLAST results are available for this feature:
BLAST of CX286791 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 12
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Sequences
The
following sequences are available for this feature:
EST sequence >CX286791 ID=CX286791; Name=CX286791; organism=Citrus clementina; type=EST; length=504bpback to top |