CX286801
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX286801 vs. ExPASy Swiss-Prot
Match: P2SAF_ARATH (Photosystem II stability/assembly factor HCF136, chloroplastic OS=Arabidopsis thaliana GN=HCF136 PE=1 SV=1) HSP 1 Score: 186.422 bits (472), Expect = 7.369e-47 Identity = 86/101 (85.15%), Postives = 99/101 (98.02%), Query Frame = 2 Query: 2 WLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQYLG 304 WLLVRGGGL+LSKGTGITEEFEEVPVQSRGFGILDVGYRS++EAWAAGGSG+LL+T NGGK+W R+KAADNIAANLY+VKF+++KKGFVLGNDGVLL+Y+G Sbjct: 303 WLLVRGGGLYLSKGTGITEEFEEVPVQSRGFGILDVGYRSEEEAWAAGGSGILLRTRNGGKSWNRDKAADNIAANLYAVKFVDDKKGFVLGNDGVLLRYVG 403
BLAST of CX286801 vs. ExPASy Swiss-Prot
Match: P2SAF_ORYSJ (Photosystem II stability/assembly factor HCF136, chloroplastic OS=Oryza sativa subsp. japonica GN=HCF136 PE=3 SV=1) HSP 1 Score: 173.711 bits (439), Expect = 4.943e-43 Identity = 87/123 (70.73%), Postives = 97/123 (78.86%), Query Frame = 2 Query: 2 WLLVRGGGLFLSKGTG----------------------ITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQYLG 304 WLLVRGGGLFLSKG+G ITE+FEE VQSRGFGILDVGYRS+DEAWAAGGSGVLLKTTNGGKTW+R+KAADNIAANLYSVKF+ + KG+VLGNDGVLL+Y+G Sbjct: 294 WLLVRGGGLFLSKGSGFQFFYRGLNDAHAISYLHPPNQITEDFEEASVQSRGFGILDVGYRSKDEAWAAGGSGVLLKTTNGGKTWVRDKAADNIAANLYSVKFLGDNKGYVLGNDGVLLRYVG 416
BLAST of CX286801 vs. ExPASy Swiss-Prot
Match: YC48L_SYNY3 (Ycf48-like protein OS=Synechocystis sp. (strain PCC 6803) GN=slr2034 PE=3 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 2.234e-19 Identity = 45/100 (45.00%), Postives = 66/100 (66.00%), Query Frame = 2 Query: 2 WLLVRGGGLFLSKGTGITEEFEEVPVQSRG-FGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQY 298 WLL RGG L S E + + Q +G +G+LD+ +R+ +E W AG SG LL + +GG+TW ++ ++I ANLY V F++ +KGFVLG DG+LL+Y Sbjct: 233 WLLARGGQLQFSTDPDAEEWSDVIAPQDKGSWGLLDLSFRTPEEVWVAGASGNLLMSQDGGQTWAKDTGVEDIPANLYRVVFLSPEKGFVLGQDGILLKY 332
BLAST of CX286801 vs. ExPASy Swiss-Prot
Match: YC48L_ANAVT (Ycf48-like protein OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=Ava_1856 PE=3 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 1.891e-18 Identity = 44/100 (44.00%), Postives = 65/100 (65.00%), Query Frame = 2 Query: 2 WLLVRGGGLFLSKGTGITEEFE-EVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQY 298 WLL RGG + S T E + + P + +G+LD+ YR+ +E W GGSG LL +T+GGKTW +++ + +AAN Y V F+ +GFV+G+ GVLL+Y Sbjct: 226 WLLARGGQVQFSDPTKPDEWLDAQTPELATSWGLLDMAYRTPNEVWIGGGSGNLLVSTDGGKTWEKDRDVEEVAANFYKVVFLKPDQGFVIGDRGVLLKY 325
BLAST of CX286801 vs. ExPASy Swiss-Prot
Match: YC48L_ANASP (Ycf48-like protein OS=Anabaena sp. (strain PCC 7120) GN=alr3844 PE=3 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 1.891e-18 Identity = 44/100 (44.00%), Postives = 64/100 (64.00%), Query Frame = 2 Query: 2 WLLVRGGGLFLSKGTGITEEFE-EVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQY 298 WLL RGG + S E + E P + +G+LD+ YR+ +E W GGSG LL +T+GGKTW +++ + +AAN Y V F+ +GFV+G+ GVLL+Y Sbjct: 226 WLLARGGQVQFSDPANPDEWLDAETPELATSWGLLDMAYRTPNEVWIGGGSGNLLVSTDGGKTWEKDRDVEEVAANFYKVVFLKPDQGFVIGDRGVLLKY 325
BLAST of CX286801 vs. ExPASy Swiss-Prot
Match: YC48L_SYNP6 (Ycf48-like protein OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=syc0372_d PE=3 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 7.187e-18 Identity = 46/111 (41.44%), Postives = 69/111 (62.16%), Query Frame = 2 Query: 2 WLLVRGGGLFLSKGTGITEEFEEV------------PVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQY 298 WL+ RGG L SK + I + +EE+ P ++ G+G LD+ YRS+ E W +GGSG LL + +GG+ W R++ + +NLY++KF K+GFVLG G+LL+Y Sbjct: 234 WLIARGGRLQFSKTSQI-DNWEEMLEESDAWGTAIEPERNAGWGFLDLAYRSKQEIWLSGGSGTLLVSEDGGEHWQRDRVIAKLPSNLYTIKFFAPKQGFVLGQRGLLLRY 343
BLAST of CX286801 vs. ExPASy Swiss-Prot
Match: YC48L_SYNE7 (Ycf48-like protein OS=Synechococcus elongatus (strain PCC 7942) GN=Synpcc7942_1178 PE=3 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 7.187e-18 Identity = 46/111 (41.44%), Postives = 69/111 (62.16%), Query Frame = 2 Query: 2 WLLVRGGGLFLSKGTGITEEFEEV------------PVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQY 298 WL+ RGG L SK + I + +EE+ P ++ G+G LD+ YRS+ E W +GGSG LL + +GG+ W R++ + +NLY++KF K+GFVLG G+LL+Y Sbjct: 234 WLIARGGRLQFSKTSQI-DNWEEMLEESDAWGTAIEPERNAGWGFLDLAYRSKQEIWLSGGSGTLLVSEDGGEHWQRDRVIAKLPSNLYTIKFFAPKQGFVLGQRGLLLRY 343
BLAST of CX286801 vs. ExPASy Swiss-Prot
Match: P2SAF_CYAPA (Photosystem II stability/assembly factor HCF136 OS=Cyanophora paradoxa GN=hcf136 PE=3 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 7.187e-18 Identity = 42/105 (40.00%), Postives = 63/105 (60.00%), Query Frame = 2 Query: 2 WLLVRGGGLFLSKGTGITEEFEEVPVQSRG-----FGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQYL 301 W+L RGG L+ S E E P G G+L++ +++ E W +GGSG+LL + + G TW +E + DNI +N Y + FI+++ GFVLGN G LL+Y+ Sbjct: 227 WMLTRGGQLWFSSNDSFDEPNWEGPKTPEGKVGFGLGLLNLAFKTPTEIWVSGGSGILLSSQDTGNTWKKETSTDNIPSNFYKISFIDKEVGFVLGNQGTLLRYV 331
BLAST of CX286801 vs. ExPASy Swiss-Prot
Match: YC48L_SYNP2 (Ycf48-like protein OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=SYNPCC7002_A0229 PE=3 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 1.601e-17 Identity = 45/103 (43.69%), Postives = 60/103 (58.25%), Query Frame = 2 Query: 2 WLLVRGGGLFLSKGTGI--TEEFEE--VPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQY 298 WLL RGG + S T E + E P G+L +GYR+ E WA GGSG ++ + +GG TW R+ A + I N Y V F+NE KGF+LG GV+L+Y Sbjct: 231 WLLARGGVVQFSDDTNPDNAEAWSEPVTPQYRNSVGLLHIGYRTPAELWAVGGSGSVVVSKDGGDTWFRDAALEEIPTNFYRVVFLNENKGFILGQQGVILRY 333
BLAST of CX286801 vs. ExPASy Swiss-Prot
Match: P2SAF_GUITH (Photosystem II stability/assembly factor HCF136, chloroplastic OS=Guillardia theta GN=hcf136 PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 6.084e-17 Identity = 38/104 (36.54%), Postives = 62/104 (59.62%), Query Frame = 2 Query: 2 WLLVRGGGLFLSKGTGITEE-----FEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQY 298 W+ RGGGL +S E FE + +++ G+GILD + + + W G G++ +T+ GK W + D ++ NLY +KF+N KGF+LG++G+LL+Y Sbjct: 291 WMSTRGGGLSVSTKNFDFESISSFNFENIDIKTGGYGILDAAFVNDKDIWIICGGGIVYNSTDKGKNWTKVDGIDKLSGNLYKIKFVNNNKGFILGSNGLLLRY 394 The following BLAST results are available for this feature:
BLAST of CX286801 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 15
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Sequences
The
following sequences are available for this feature:
EST sequence >CX286801 ID=CX286801; Name=CX286801; organism=Citrus clementina; type=EST; length=542bpback to top |