CX286960

Overview
NameCX286960
Unique NameCX286960
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length577
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX286960 vs. ExPASy Swiss-Prot
Match: GDL52_ARATH (GDSL esterase/lipase At3g14820 OS=Arabidopsis thaliana GN=At3g14820 PE=3 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 4.785e-26
Identity = 55/140 (39.29%), Postives = 90/140 (64.29%), Query Frame = 3
Query:    6 LGARKFGVTSLPPLGCFPAARILFGNHGRGCVSRINIAAQQFNKKVNSSASNLQKQLPGLKIVIFDIFKPLFELVQSPSKFGFVEATRSCCGTGTTKRTVFLCNQKSARTCPNASQYVFWDSVHPSEAANKVIADEMIVQ 425
            LGA+  G+ S  P+GC PA R LFG   R C  ++N  A  FN K++SS   L+K+LP  +++  D++  L +++++P+ +GF  A + CCGTG  +  + LCN+ +  TC +AS +VF+DS HPSE A ++I  +++ +
Sbjct:  207 LGAKNIGLFSGVPVGCLPAQRTLFGGFERKCYEKLNNMALHFNSKLSSSLDTLKKELPS-RLIFIDVYDTLLDIIKNPTNYGFKVADKGCCGTGKIE-LMELCNKFTPFTCSDASTHVFFDSYHPSEKAYQIITHKLLAK 344          
BLAST of CX286960 vs. ExPASy Swiss-Prot
Match: GDL34_ARATH (GDSL esterase/lipase At2g04570 OS=Arabidopsis thaliana GN=At2g04570 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 8.161e-26
Identity = 55/143 (38.46%), Postives = 81/143 (56.64%), Query Frame = 3
Query:    3 GLGARKFGVTSLPPLGCFPAARILFGNHGRGCVSRINIAAQQFNKKVNSSASNLQKQLPGLKIVIFDIFKPLFELVQSPSKFGFVEATRSCCGTGTTKRTVFLCNQKSARTCPNASQYVFWDSVHPSEAANKVIADEMIVQGF 431
            GLGARK  +  LPP+GC P  R      G  CV R N  A QFN K++     L K+LPG  +V  + ++P   ++++PS FGF     +CC TG  +   + C + +  TC NA +YVFWDS HP++  N ++A+ ++   F
Sbjct:  205 GLGARKISLGGLPPMGCMPLERATNIGTGGECVGRYNDIAVQFNSKLDKMVEKLSKELPGSNLVFSNPYEPFMRIIKNPSSFGFEVVGAACCATGMFEMG-YGCQRNNPFTCTNADKYVFWDSFHPTQKTNHIMANALMNSTF 346          
BLAST of CX286960 vs. ExPASy Swiss-Prot
Match: GDL4_ARATH (GDSL esterase/lipase At1g20120 OS=Arabidopsis thaliana GN=At1g20120 PE=2 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 1.392e-25
Identity = 52/137 (37.96%), Postives = 80/137 (58.39%), Query Frame = 3
Query:    9 GARKFGVTSLPPLGCFPAARILFGNHGRGCVSRINIAAQQFNKKVNSSASNLQKQLPGLKIVIFDIFKPLFELVQSPSKFGFVEATRSCCGTGTTKRTVFLCNQKSARTCPNASQYVFWDSVHPSEAANKVIADEMI 419
            GA+K G   + P+GC P  R   G   R C   +N AAQ FN K+++S + L K +    +V  DI+    +++Q+P K+GF E  R CCGTG  +    LCN+ ++  C N S ++FWDS HP+E A K+++ + +
Sbjct:  257 GAKKIGFIGVSPIGCIPIQRTTRGGLKRKCADELNFAAQLFNSKLSTSLNELAKTMKNTTLVYIDIYSSFNDMIQNPKKYGFDEIDRGCCGTGLLELGP-LCNKYTSLLCKNVSSFMFWDSYHPTERAYKILSQKFV 392          
BLAST of CX286960 vs. ExPASy Swiss-Prot
Match: GDL1_ARATH (GDSL esterase/lipase At1g06990 OS=Arabidopsis thaliana GN=At1g06990 PE=2 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 9.023e-25
Identity = 56/147 (38.10%), Postives = 87/147 (59.18%), Query Frame = 3
Query:    6 LGARKFGVTSLPPLGCFPAARILF--GNHGRGCVSRINIAAQQFNKKVNSSASNLQKQLPGLKIVIFDIFKPLFELVQSPSKFGFVEATRSCCGTGTTKRTVFLCNQKSARTCPNASQYVFWDSVHPSEAANKVIADEMIVQGFALI 440
            +G RK  V  LPP+GC P    +     + R C+ + N  +Q+FN+K+ +S + +Q  L G  I   DI+  LF++  +P ++G  E TR CCGTG  +   +LCN  + R CPN +QY+FWD +HPS+ A  VI+  ++ Q F ++
Sbjct:  215 IGCRKIMVLGLPPVGCLPIQMTMAMQKQNERRCIDKQNSDSQEFNQKLKNSLTEMQSNLTGSVIFYGDIYGALFDMATNPQRYGLKETTRGCCGTGEIE-LAYLCNALT-RICPNPNQYLFWDDIHPSQIAYIVISLSLVEQIFHVL 359          
BLAST of CX286960 vs. ExPASy Swiss-Prot
Match: GDL5_ARATH (GDSL esterase/lipase At1g23500 OS=Arabidopsis thaliana GN=At1g23500 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.178e-24
Identity = 58/138 (42.03%), Postives = 75/138 (54.35%), Query Frame = 3
Query:    6 LGARKFGVTSLPPLGCFPAARILFGNHGRGCVSRINIAAQQFNKKVNSSASNLQKQLPGLKIVIFDIFKPLFELVQSPSKFGFVEATRSCCGTGTTKRTVFLCNQKSARTCPNASQYVFWDSVHPSEAANKVIADEMI 419
            +GARKF V    PLGC P AR   GN G  C+  IN  A  FN+K+++  +NL   LPG K V  D++ PL  L+ +P   GF++    CC           C   S   CP+ASQYVFWD  HPSE +   IA ++I
Sbjct:  211 MGARKFAVLGTLPLGCLPGARHTGGNFGNICLVPINQVAAIFNQKLSAKLNNLHTILPGAKFVYVDMYNPLLNLINNPRASGFIDVADGCC-----------CMPTSPVPCPDASQYVFWDFAHPSEKSYMTIAPKII 337          
BLAST of CX286960 vs. ExPASy Swiss-Prot
Match: GDL24_ARATH (GDSL esterase/lipase At1g58480 OS=Arabidopsis thaliana GN=At1g58480 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.178e-24
Identity = 58/139 (41.73%), Postives = 85/139 (61.15%), Query Frame = 3
Query:    6 LGARKFGVTSLPPLGCFPAARILFGNH-GRGCVSRINIAAQQFNKKVNSSASNLQKQLPGLKIVIFDIFKPLFELVQSPSKFGFVEATRSCCGTGTTKRTVFLCNQKSARTCPNASQYVFWDSVHPSEAANKVIADEMI 419
            LGARK GV S  P+GC P  R +FG    RGC   +N  A+QFN +++ +  +L K+L G+ I+  +++  LF+++Q P K+G       CCG G    + +LCN  +  TC N+S Y+FWDS HPSE A +VI D ++
Sbjct:  205 LGARKIGVFSAVPVGCVPLQRTVFGGFFTRGCNEPLNNMAKQFNARLSPALDSLDKELDGV-ILYINVYDTLFDMIQHPKKYG-------CCGKGLLTIS-YLCNSLNPFTCSNSSSYIFWDSYHPSERAYQVIVDNLL 334          
BLAST of CX286960 vs. ExPASy Swiss-Prot
Match: EXL2_ARATH (GDSL esterase/lipase EXL2 OS=Arabidopsis thaliana GN=EXL2 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 4.478e-24
Identity = 51/133 (38.35%), Postives = 76/133 (57.14%), Query Frame = 3
Query:    9 GARKFGVTSLPPLGCFPAARILFGNHGRGCVSRINIAAQQFNKKVNSSASNLQKQLPGLKIVIFDIFKPLFELVQSPSKFGFVEATRSCCGTGTTKRTVFLCNQKSARTCPNASQYVFWDSVHPSEAANKVIA 407
            GAR+  V   PP+GC P+ R L G   R CV R N A + +N K+ ++  +L + L    I+  DI+  L +++  P ++GF    + CCGTG  +    LCN  +A  CPN  +YVFWDS HP+E   +++A
Sbjct:  240 GARRIQVFGAPPVGCVPSQRTLAGGPTRNCVVRFNDATKLYNVKLAANLGSLSRTLGDKTIIYVDIYDSLLDIILDPRQYGFKVVDKGCCGTGLIE-VALLCNNFAADVCPNRDEYVFWDSFHPTEKTYRIMA 371          
BLAST of CX286960 vs. ExPASy Swiss-Prot
Match: GDL42_ARATH (GDSL esterase/lipase At2g30310 OS=Arabidopsis thaliana GN=At2g30310 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 5.849e-24
Identity = 55/136 (40.44%), Postives = 80/136 (58.82%), Query Frame = 3
Query:    6 LGARKFGVTSLPPLGCFPAARIL-FGNHGRGCVSRINIAAQQFNKKVNSSASNLQKQLPGLKIVIFDIFKPLFELVQSPSKFGFVEATRSCCGTGTTKRTVFLCNQKSARTCPNASQYVFWDSVHPSEAANKVIAD 410
            LG R   V  LPP+GC P        N  R CV + N  +  +N+K+      +Q  LPG   +  +++ PL +++Q+PSK+GF E  + CCGTG  + T F+CN  + +TCPN S ++FWDS+HPSEAA   I +
Sbjct:  214 LGCRNIVVGGLPPMGCLPIQMTAKMRNILRFCVEQENKDSVLYNQKLVKKLPEIQASLPGSNFLYANVYDPLMDMIQNPSKYGFKETKKGCCGTGYLE-TTFMCNPLT-KTCPNHSDHLFWDSIHPSEAAYNYIGN 347          
BLAST of CX286960 vs. ExPASy Swiss-Prot
Match: GDL66_ARATH (GDSL esterase/lipase At4g26790 OS=Arabidopsis thaliana GN=At4g26790 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.303e-23
Identity = 50/138 (36.23%), Postives = 80/138 (57.97%), Query Frame = 3
Query:    6 LGARKFGVTSLPPLGCFPAARILFGNHGRGCVSRINIAAQQFNKKVNSSASNLQKQLPGLKIVIFDIFKPLFELVQSPSKFGFVEATRSCCGTGTTKRTVFLCNQKSARTCPNASQYVFWDSVHPSEAANKVIADEMI 419
            LGARK  ++ L P GC P  R     +G  C+   NI A+ FN K+      L + L G+++V  + +  + E++  P  FGF     +CCGTG  + + +LC++ +  TC +AS+YVFWDS HP+E  N ++A+ ++
Sbjct:  207 LGARKMSLSGLSPFGCLPLERTTQLFYGSKCIEEYNIVARDFNIKMEEKVFQLNRDLNGIQLVFSNPYDLVSEIIYHPEAFGFENVRSACCGTGYYEMS-YLCDKMNPFTCSDASKYVFWDSFHPTEKTNAIVANHVL 343          
BLAST of CX286960 vs. ExPASy Swiss-Prot
Match: GDL23_ARATH (GDSL esterase/lipase At1g58430 OS=Arabidopsis thaliana GN=At1g58430 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.222e-23
Identity = 57/136 (41.91%), Postives = 81/136 (59.56%), Query Frame = 3
Query:    6 LGARKFGVTSLPPLGCFPAARIL-FGNHGRGCVSRINIAAQQFNKKVNSSASNLQKQLPGLKIVIFDIFKPLFELVQSPSKFGFVEATRSCCGTGTTKRTVFLCNQKSARTCPNASQYVFWDSVHPSEAANKVIAD 410
            LG RK  V  LPP+GC P      F N  R C+ + N  +  +N+K+       Q  L G KI+  D++ P+ E++Q+PSK+GF E TR CCGTG  + T F+CN  S+  C N S+++F+DS+HPSEA    I +
Sbjct:  215 LGCRKILVGGLPPMGCLPIQMTAQFRNVLRFCLEQENRDSVLYNQKLQKLLPQTQASLTGSKILYSDVYDPMMEMLQNPSKYGFKETTRGCCGTGFLE-TSFMCNAYSS-MCQNRSEFLFFDSIHPSEATYNYIGN 348          
The following BLAST results are available for this feature:
BLAST of CX286960 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 90
Match NameE-valueIdentityDescription
GDL52_ARATH4.785e-2639.29GDSL esterase/lipase At3g14820 OS=Arabidopsis thal... [more]
GDL34_ARATH8.161e-2638.46GDSL esterase/lipase At2g04570 OS=Arabidopsis thal... [more]
GDL4_ARATH1.392e-2537.96GDSL esterase/lipase At1g20120 OS=Arabidopsis thal... [more]
GDL1_ARATH9.023e-2538.10GDSL esterase/lipase At1g06990 OS=Arabidopsis thal... [more]
GDL5_ARATH1.178e-2442.03GDSL esterase/lipase At1g23500 OS=Arabidopsis thal... [more]
GDL24_ARATH1.178e-2441.73GDSL esterase/lipase At1g58480 OS=Arabidopsis thal... [more]
EXL2_ARATH4.478e-2438.35GDSL esterase/lipase EXL2 OS=Arabidopsis thaliana ... [more]
GDL42_ARATH5.849e-2440.44GDSL esterase/lipase At2g30310 OS=Arabidopsis thal... [more]
GDL66_ARATH1.303e-2336.23GDSL esterase/lipase At4g26790 OS=Arabidopsis thal... [more]
GDL23_ARATH2.222e-2341.91GDSL esterase/lipase At1g58430 OS=Arabidopsis thal... [more]

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Properties
Property NameValue
Genbank descriptionC01003A06SK Veg1 Citrus clementina cDNA clone C01003A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286960 ID=CX286960; Name=CX286960; organism=Citrus clementina; type=EST; length=577bp
ATGGATTGGGAGCAAGGAAATTTGGAGTCACTTCATTGCCACCGCTGGGT
TGCTTTCCCGCAGCAAGAATTTTATTCGGTAATCATGGAAGGGGCTGTGT
CTCTAGAATCAATATTGCTGCTCAACAATTTAATAAGAAGGTCAACTCTT
CAGCATCAAATCTCCAAAAGCAACTTCCTGGTCTGAAAATTGTGATTTTC
GACATTTTCAAGCCACTCTTTGAACTTGTCCAGTCCCCTTCAAAATTTGG
CTTCGTGGAAGCAACAAGAAGTTGCTGTGGAACAGGAACTACAAAGAGAA
CTGTATTTCTGTGCAATCAAAAGTCAGCTAGAACATGCCCCAATGCCTCC
CAGTATGTGTTCTGGGACAGTGTTCATCCTTCTGAGGCTGCTAATAAGGT
TATTGCCGACGAAATGATTGTTCAAGGATTTGCCCTTATCTGAAGAGGAT
ATCTAGTCCACAAATATGACCAACATTTCTGTTCAGGTTTCTTCACCCTC
TAGGTATCTGGGCCTCAGATTATCTATTTGTTCGTTTTTCATTTCAAAAA
AAAAAAAAAAAAAAGGGGGGGCCCGGT
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