CX286960

Overview
NameCX286960
Unique NameCX286960
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length577
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX286960 vs. ExPASy Swiss-Prot
Match: GDL44_ARATH (GDSL esterase/lipase At2g31550 OS=Arabidopsis thaliana GN=At2g31550 PE=2 SV=3)

HSP 1 Score: 107.842 bits (268), Expect = 3.791e-23
Identity = 55/138 (39.86%), Postives = 80/138 (57.97%), Query Frame = 3
Query:    6 LGARKFGVTSLPPLGCFPAARIL-FGNHGRGCVSRINIAAQQFNKKVNSSASNLQKQLPGLKIVIFDIFKPLFELVQSPSKFGFVEATRSCCGTGTTKRTVFLCNQKSARTCPNASQYVFWDSVHPSEAANKVIADEM 416
            LG R   V  LPP+GC P      F N  R C+   N  +  +N+K+      ++  LPG K +  D++ P+ E++Q+PSK+GF E  R CCGTG  + T F+CN  S   C N S+++F+DS+HPSEA   VI + +
Sbjct:  215 LGVRNVLVGGLPPMGCLPIHMTAKFRNIFRFCLEHHNKDSVLYNEKLQKLLPQIEASLPGSKFLYADVYNPMMEMIQNPSKYGFKETKRGCCGTGFLE-TSFMCNVFSP-VCQNRSEFMFFDSIHPSEATYNVIGNRL 350          
BLAST of CX286960 vs. ExPASy Swiss-Prot
Match: GDL43_ARATH (GDSL esterase/lipase At2g31540 OS=Arabidopsis thaliana GN=At2g31540 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 4.951e-23
Identity = 55/136 (40.44%), Postives = 80/136 (58.82%), Query Frame = 3
Query:    6 LGARKFGVTSLPPLGCFPAARIL-FGNHGRGCVSRINIAAQQFNKKVNSSASNLQKQLPGLKIVIFDIFKPLFELVQSPSKFGFVEATRSCCGTGTTKRTVFLCNQKSARTCPNASQYVFWDSVHPSEAANKVIAD 410
            LG R   V  LPP+GC P      F N  R C+   N  +  +N+K+ +    ++  LPG K +  D++ P+ E++Q+PSK+GF E  R CCGTG  + T F+CN  S   C N S+++F+DS+HPSEA   VI +
Sbjct:  215 LGVRNVLVGGLPPMGCLPIHMTAKFRNIFRFCLEHHNKDSVLYNEKLQNLLPQIEASLPGSKFLYADVYNPMMEMIQNPSKYGFKETKRGCCGTGFLE-TSFMCNVFSP-VCQNRSEFLFFDSIHPSEATYNVIGN 348          
BLAST of CX286960 vs. ExPASy Swiss-Prot
Match: GDL41_ARATH (GDSL esterase/lipase At2g30220 OS=Arabidopsis thaliana GN=At2g30220 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 6.466e-23
Identity = 55/140 (39.29%), Postives = 82/140 (58.57%), Query Frame = 3
Query:    6 LGARKFGVTSLPPLGCFPAA-----RILFGNHGRGCVSRINIAAQQFNKKVNSSASNLQKQLPGLKIVIFDIFKPLFELVQSPSKFGFVEATRSCCGTGTTKRTVFLCNQKSARTCPNASQYVFWDSVHPSEAANKVIAD 410
            LG R   V  LPP+GC P       R + G     CV + N  +  +N+K+      +Q  LPG K +  +++ P+ +++++PSK+GF E  + CCGTG  + T FLC   S +TCPN S ++FWDS+HPSEAA K + +
Sbjct:  213 LGCRNILVGGLPPMGCLPIQLTAKLRTILGI----CVEQENKDSILYNQKLVKKLPEIQASLPGSKFLYANVYDPVMDMIRNPSKYGFKETKKGCCGTGYLE-TSFLCTSLS-KTCPNHSDHLFWDSIHPSEAAYKYLGN 346          
BLAST of CX286960 vs. ExPASy Swiss-Prot
Match: APG_ARATH (Anter-specific proline-rich protein APG OS=Arabidopsis thaliana GN=APG PE=2 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 6.466e-23
Identity = 52/139 (37.41%), Postives = 77/139 (55.40%), Query Frame = 3
Query:    3 GLGARKFGVTSLPPLGCFPAARILFGNHGRGCVSRINIAAQQFNKKVNSSASNLQKQLPGLKIVIFDIFKPLFELVQSPSKFGFVEATRSCCGTGTTKRTVFLCNQKSARTCPNASQYVFWDSVHPSEAANKVIADEMI 419
            G GAR+ GV   PPLGC P+ R+      + C   +N A+Q FN K+      L K LP    V  DI+  + +++++P+ +GF E  + CC TG       LC + +++ CPN S Y+FWD VHP++ A K I   +I
Sbjct:  391 GYGARRIGVIGTPPLGCVPSQRL---KKKKICNEELNYASQLFNSKLLLILGQLSKTLPNSTFVYMDIYTIISQMLETPAAYGFEETKKPCCKTGLLSAGA-LCKKSTSKICPNTSSYLFWDGVHPTQRAYKTINKVLI 525          
BLAST of CX286960 vs. ExPASy Swiss-Prot
Match: GDL86_ARATH (GDSL esterase/lipase At5g45960 OS=Arabidopsis thaliana GN=At5g45960 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.881e-22
Identity = 55/131 (41.98%), Postives = 74/131 (56.49%), Query Frame = 3
Query:    9 GARKFGVTSLPPLGCFPAARILFGNHG---RGCVSRINIAAQQFNKKVNSSASNLQKQLP--GLKIVIFDIFKPLFELVQSPSKFGFVEATRSCCGTGTTKRTVFLCNQKSARTCPNASQYVFWDSVHPSE 386
            GARK  V  LPP+GC P    LF       R C+ R +  A  +N  +    + +Q  L   G KI   D++ P++E+++ P KFGF E    CCG+G  + + FLCN KS   CPN S YVF+DS+HPSE
Sbjct:  226 GARKITVAGLPPIGCLPIVITLFSGEALTNRRCIDRFSTVATNYNFLLQKQLALMQVGLAHLGSKIFYLDVYNPVYEVIRDPRKFGFEEVFSGCCGSGYLEAS-FLCNPKS-YVCPNTSAYVFFDSIHPSE 354          
BLAST of CX286960 vs. ExPASy Swiss-Prot
Match: GDL39_ARATH (GDSL esterase/lipase At2g24560 OS=Arabidopsis thaliana GN=At2g24560 PE=2 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 5.474e-22
Identity = 53/129 (41.09%), Postives = 80/129 (62.02%), Query Frame = 3
Query:    6 LGARKFGVTSLPPLGCFPAARIL-FGNHGRGCVSRINIAAQQFNKKVNSSASNLQKQLPGLKIVIFDIFKPLFELVQSPSKFGFVEATRSCCGTGTTKRTVFLCNQKSARTCPNASQYVFWDSVHPSEA 389
            LG RK  V  LPP+GC P      F N  R C+ + N  +  +N+K+ +    ++  L G KI+  +++ P+ +++Q+PSK+GF E  R CCGTG  + T F+CN  S  TC N S+++F+DS+HPSEA
Sbjct:  214 LGCRKIMVGGLPPMGCLPIQMTAKFRNALRFCLEQENRDSVLYNQKLQNLLPQIEASLTGSKILYSNVYDPMMDMMQNPSKYGFKETKRGCCGTGHLE-TSFMCNAFSP-TCRNHSEFLFFDSIHPSEA 340          
BLAST of CX286960 vs. ExPASy Swiss-Prot
Match: APG_BRANA (Anther-specific proline-rich protein APG (Fragment) OS=Brassica napus GN=APG PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 7.150e-22
Identity = 52/133 (39.10%), Postives = 75/133 (56.39%), Query Frame = 3
Query:    3 GLGARKFGVTSLPPLGCFPAARILFGNHGRGCVSRINIAAQQFNKKVNSSASNLQKQLPGLKIVIFDIFKPLFELVQSPSKFGFVEATRSCCGTGTTKRTVFLCNQKSARTCPNASQYVFWDSVHPSEAANKV 401
            G GAR+ GV   PP+GC P+ R+      + C   +N AAQ FN K+      L K LP   IV  DI+    ++++SP  +GF E  + CC  G TK  VF C +++ +   NAS Y+FWD +HPS+ A ++
Sbjct:  308 GYGARRIGVIGTPPIGCTPSQRV---KKKKICNEDLNYAAQLFNSKLVIILGQLSKTLPNSTIVYGDIYSIFSKMLESPEDYGFEEIKKPCCKIGLTKGGVF-CKERTLKNMSNASSYLFWDGLHPSQRAYEI 436          
BLAST of CX286960 vs. ExPASy Swiss-Prot
Match: GDL89_ARATH (GDSL esterase/lipase At5g63170 OS=Arabidopsis thaliana GN=At5g63170 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.080e-21
Identity = 54/140 (38.57%), Postives = 73/140 (52.14%), Query Frame = 3
Query:    6 LGARKFGVTSLPPLGCFPAARILFGNHGRGCVSRINIAAQQFNKKVNSSASNLQKQLPGLKIVIFDIFKPLFELVQSPSKFGFVEATRSCCGTGTTKRTVFLCNQKSARTCPNASQYVFWDSVHPSEAANKVIADEMIVQ 425
            LGARKF +    PLGC P A    G     C+   N  A+ FN+K+    +NL   LPG + +  D++ PL ELV++P + GF+  TR CC           C   +   C +AS+YVFWD  HPSE A + I   +I Q
Sbjct:  207 LGARKFAIMGTLPLGCLPGASNALGGL---CLEPANAVARLFNRKLADEVNNLNSMLPGSRSIYVDMYNPLLELVKNPLRSGFISPTRPCC-----------CAPAAPIPCLDASRYVFWDIAHPSEKAYQTIIPPIIQQ 332          
BLAST of CX286960 vs. ExPASy Swiss-Prot
Match: GDL38_ARATH (GDSL esterase/lipase At2g23540 OS=Arabidopsis thaliana GN=At2g23540 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 3.548e-21
Identity = 50/138 (36.23%), Postives = 76/138 (55.07%), Query Frame = 3
Query:    6 LGARKFGVTSLPPLGCFPAARILFGNHGRGCVSRINIAAQQFNKKVNSSASNLQKQLPGLKIVIFDIFKPLFELVQSPSKFGFVEATRSCCGTGTTKRTVFLCNQKSARTCPNASQYVFWDSVHPSEAANKVIADEMI 419
            L ARKF + ++ P+GC P  + +       CV   N  A Q+N ++ S    L K+LPG   V  +++  + EL+ +  K+GF  AT++CCG G     +  C   S+  C    +YVFWD  HPSEAAN +IA +++
Sbjct:  233 LDARKFVIGNVGPIGCIPYQKTINQLDENECVDLANKLANQYNVRLKSLLEELNKKLPGAMFVHANVYDLVMELITNYDKYGFKSATKACCGNGGQYAGIIPCGPTSS-LCEERDKYVFWDPYHPSEAANVIIAKQLL 369          
BLAST of CX286960 vs. ExPASy Swiss-Prot
Match: GDL85_ARATH (GDSL esterase/lipase At5g45950 OS=Arabidopsis thaliana GN=At5g45950 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.634e-21
Identity = 51/138 (36.96%), Postives = 82/138 (59.42%), Query Frame = 3
Query:    6 LGARKFGVTSLPPLGCFPAARILFGNHGRGCVSRINIAAQQFNKKVNSSASNLQKQLPGLKIVIFDIFKPLFELVQSPSKFGFVEATRSCCGTGTTKRTVFLCNQKSARTCPNASQYVFWDSVHPSEAANKVIADEMI 419
            LGA++  V  +PP+GC P  + L G   + CV ++N  A  FN K+  +   LQ ++ GLK +  D +  + E +++P KFGFVEA+  CCGTGT +   +    K  + C + ++YVFWD+VHP++   ++I  + I
Sbjct:  217 LGAKRLVVVGVPPMGCMPLIKYLRGQ--KTCVDQLNQIAFSFNAKIIKNLELLQSKI-GLKTIYVDAYSTIQEAIKNPRKFGFVEASLGCCGTGTYE---YGETCKDMQVCKDPTKYVFWDAVHPTQRMYQIIVKKAI 348          
The following BLAST results are available for this feature:
BLAST of CX286960 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 90
Match NameE-valueIdentityDescription
GDL44_ARATH3.791e-2339.86GDSL esterase/lipase At2g31550 OS=Arabidopsis thal... [more]
GDL43_ARATH4.951e-2340.44GDSL esterase/lipase At2g31540 OS=Arabidopsis thal... [more]
GDL41_ARATH6.466e-2339.29GDSL esterase/lipase At2g30220 OS=Arabidopsis thal... [more]
APG_ARATH6.466e-2337.41Anter-specific proline-rich protein APG OS=Arabido... [more]
GDL86_ARATH1.881e-2241.98GDSL esterase/lipase At5g45960 OS=Arabidopsis thal... [more]
GDL39_ARATH5.474e-2241.09GDSL esterase/lipase At2g24560 OS=Arabidopsis thal... [more]
APG_BRANA7.150e-2239.10Anther-specific proline-rich protein APG (Fragment... [more]
GDL89_ARATH2.080e-2138.57GDSL esterase/lipase At5g63170 OS=Arabidopsis thal... [more]
GDL38_ARATH3.548e-2136.23GDSL esterase/lipase At2g23540 OS=Arabidopsis thal... [more]
GDL85_ARATH4.634e-2136.96GDSL esterase/lipase At5g45950 OS=Arabidopsis thal... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC01003A06SK Veg1 Citrus clementina cDNA clone C01003A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286960 ID=CX286960; Name=CX286960; organism=Citrus clementina; type=EST; length=577bp
ATGGATTGGGAGCAAGGAAATTTGGAGTCACTTCATTGCCACCGCTGGGT
TGCTTTCCCGCAGCAAGAATTTTATTCGGTAATCATGGAAGGGGCTGTGT
CTCTAGAATCAATATTGCTGCTCAACAATTTAATAAGAAGGTCAACTCTT
CAGCATCAAATCTCCAAAAGCAACTTCCTGGTCTGAAAATTGTGATTTTC
GACATTTTCAAGCCACTCTTTGAACTTGTCCAGTCCCCTTCAAAATTTGG
CTTCGTGGAAGCAACAAGAAGTTGCTGTGGAACAGGAACTACAAAGAGAA
CTGTATTTCTGTGCAATCAAAAGTCAGCTAGAACATGCCCCAATGCCTCC
CAGTATGTGTTCTGGGACAGTGTTCATCCTTCTGAGGCTGCTAATAAGGT
TATTGCCGACGAAATGATTGTTCAAGGATTTGCCCTTATCTGAAGAGGAT
ATCTAGTCCACAAATATGACCAACATTTCTGTTCAGGTTTCTTCACCCTC
TAGGTATCTGGGCCTCAGATTATCTATTTGTTCGTTTTTCATTTCAAAAA
AAAAAAAAAAAAAAGGGGGGGCCCGGT
back to top