CX286960

Overview
NameCX286960
Unique NameCX286960
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length577
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX286960 vs. ExPASy Swiss-Prot
Match: EXL6_ARATH (GDSL esterase/lipase EXL6 OS=Arabidopsis thaliana GN=EXL6 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.306e-15
Identity = 46/142 (32.39%), Postives = 71/142 (50.00%), Query Frame = 3
Query:    6 LGARKFGVTSLPPLGCFPAARILFGNHGRGCVSRINIAAQQFNKKVNSSASN--LQKQLPGLKIVIFDIFKPLFELVQSPSKFGFVEATRSCCGTGTTKRTVFLCNQKSARTCPNASQYVFWDSVHPSEAANKVIADEMIVQ 425
            LGARKF V  + P+GC P  R  FG     C   +N   + FN K+    ++  ++      K V  DI+  L +LV++P  +GF EA ++CC           C   +   C +  +YVF+D  HPS+ A +VI+  ++ Q
Sbjct:  207 LGARKFAVMGVMPVGCLPIHRASFGGVFGWCNFLLNRITEDFNMKLQKGLTSYAVEYDFKDAKFVYVDIYGTLMDLVKNPMAYGFTEAKKACC-----------CMPNAIIPCFHPDKYVFYDFAHPSQKAYEVISKPIVYQ 337          
BLAST of CX286960 vs. ExPASy Swiss-Prot
Match: GLIP6_ARATH (GDSL esterase/lipase 6 OS=Arabidopsis thaliana GN=GLIP6 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.228e-15
Identity = 37/134 (27.61%), Postives = 71/134 (52.99%), Query Frame = 3
Query:    6 LGARKFGVTSLPPLGCFPAARILFGNHGRGCVSRINIAAQQFNKKVNSSASNLQKQLPGLKIVIFDIFKPLFELVQSPSKFGFVEATRSCCGTGTTKRTVFLCNQKSARTCPNASQYVFWDSVHPSEAANKVIA 407
            LGAR+    SL P+GC PA  +L       C  ++N+ A+ +NK++    + +  + PG   V   ++         P+++GF + + +CCG GT    +  C ++  + C N ++++FWD  HP+E   ++++
Sbjct:  204 LGARRIAFFSLGPVGCVPARAMLPNAPTNKCFGKMNVMAKMYNKRLEDIVNIIPTKYPGAIAVFGAVYGITHRFQTYPARYGFSDVSNACCGNGTL-GGLMQCGREGYKICNNPNEFLFWDFYHPTEHTYRLMS 336          
BLAST of CX286960 vs. ExPASy Swiss-Prot
Match: GDL17_ARATH (GDSL esterase/lipase At1g33811 OS=Arabidopsis thaliana GN=At1g33811 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.909e-15
Identity = 45/137 (32.85%), Postives = 68/137 (49.64%), Query Frame = 3
Query:    9 GARKFGVTSLPPLGCFPAARILFGNHGRG---CVSRINIAAQQFNKKVNSSASNLQK-QLPGLKIVIFDIFKPLFELVQSPSKFGFVEATRSCCGTGTTKRTVFLCNQKSARTCPNASQYVFWDSVHPSEAANKVIA 407
            GARK  VT +  +GC P     + N       C  +IN A   FN +V      L K QL G K V  D +K  ++L  + + +GF    + CCG G     +     ++   CP+ ++Y+FWD+ HP+E AN ++A
Sbjct:  215 GARKVIVTGVGQIGCIPYQLARYNNRNNSTGRCNEKINNAIVVFNTQVKKLVDRLNKGQLKGAKFVYLDSYKSTYDLAVNGAAYGFEVVDKGCCGVGRNNGQITCLPLQTP--CPDRTKYLFWDAFHPTETANILLA 349          
BLAST of CX286960 vs. ExPASy Swiss-Prot
Match: GDL14_ARATH (GDSL esterase/lipase At1g29660 OS=Arabidopsis thaliana GN=At1g29660 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.800e-15
Identity = 44/133 (33.08%), Postives = 61/133 (45.86%), Query Frame = 3
Query:    9 GARKFGVTSLPPLGCFPAARILFGNHGRGCVSRINIAAQQFNKKVNSSASNLQKQLPGLKIVIFDIFKPLFELVQSPSKFGFVEATRSCCGTGTTKRTVFLCNQKSARTCPNASQYVFWDSVHPSEAANKVIA 407
            GARKF +  +  +GC P A       G  CV RIN A + FN ++ S    L            + +    +++ +PS +GF     +CCG G  +    L        C N  +YVFWD+ HPS AAN  IA
Sbjct:  211 GARKFALVGIGAIGCSPNALAQGSQDGTTCVERINSANRIFNNRLISMVQQLNNAHSDASFTYINAYGAFQDIIANPSAYGFTNTNTACCGIG--RNGGQLTCLPGEPPCLNRDEYVFWDAFHPSAAANTAIA 341          
BLAST of CX286960 vs. ExPASy Swiss-Prot
Match: GLIP3_ARATH (GDSL esterase/lipase 3 OS=Arabidopsis thaliana GN=GLIP3 PE=2 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 8.465e-15
Identity = 50/154 (32.47%), Postives = 74/154 (48.05%), Query Frame = 3
Query:    6 LGARKFGVTSLPPLGCFPAARILFGNHGRGCVSRINIAAQQFNKKVNSSASNLQKQLPGLKIVIFDIFKPLFELVQSPSKFGFVEATRSCCGTGTTKRTVFLCNQKSART-----CPNASQYVFWDSVHPSEAANKVIADEMIVQGFALI*RGY 452
            +G RKFG  ++ P  C P + I        C   +       NKK       LQ+QL G +  + D    L E + SPSK+GF E  ++CCG+G   R +  C  +   +     C N + Y+F+DS H +E A++ IA E+I  G   + R Y
Sbjct:  205 MGGRKFGFLNVGPYECSPNSLIRDRTKIGSCFKPVAELIDMHNKKFPDVLRRLQRQLSGFRYALHDYHTSLSERINSPSKYGFKEGKKACCGSGPL-RGINTCGNRIGPSQGYGLCENVTDYLFYDSSHLTEKAHRQIA-ELIWNGPPNVTRPY 356          
BLAST of CX286960 vs. ExPASy Swiss-Prot
Match: LIP4_ARATH (GDSL esterase/lipase LIP-4 OS=Arabidopsis thaliana GN=LIP4 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.106e-14
Identity = 39/143 (27.27%), Postives = 70/143 (48.95%), Query Frame = 3
Query:    9 GARKFGVTSLPPLGCFPAARILFGNHG---RGCVSRINIAAQQFNKKVNSSASNLQKQLPGLKIVIFDIFKPLFELVQSPSKFGFVEATRSCCGTGTTK---RTVFLCNQKSARTCPNASQYVFWDSVHPSEAANKVIADEMI 419
            G R+F + +  PLGC P    +  +      GC+   N AA  FN+ ++     L+ +L    I+  DI+   + L+ + +++GF     +CCG G T         C  K +  C   S+++ WD +H +E AN ++A +++
Sbjct:  214 GGRRFWIHNTGPLGCLPQKLSMVKSKDLDQHGCLVSYNSAATLFNQGLDHMCEELRTELRDATIIYIDIYAIKYSLIANSNQYGFKSPLMACCGYGGTPYNYNVKITCGHKGSNVCEEGSRFISWDGIHYTETANAIVAMKVL 356          
BLAST of CX286960 vs. ExPASy Swiss-Prot
Match: GDL61_ARATH (GDSL esterase/lipase At4g01130 OS=Arabidopsis thaliana GN=At4g01130 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.106e-14
Identity = 45/151 (29.80%), Postives = 73/151 (48.34%), Query Frame = 3
Query:    3 GLGARKFGVTSLPPLGCFPAARILFGNHGR-----GCVSRINIAAQQFNKKVNSSASNLQKQLPGLKIVIFDIFKPLFELVQSPSKFGFVEATRSCCGTG----TTKRTVFLCNQK-------SARTCPNASQYVFWDSVHPSEAANKVIA 407
            G+G R F V +L P+GC+PA    + +        GC+  +N A + +N  +N + S  + +L    ++  D  K L +L Q P  +G     ++CCG G       + +F  N K       +A+ C +   YV WD +H +EAAN  I+
Sbjct:  211 GIGGRTFLVLNLAPVGCYPAILTGYTHTDADLDKYGCLIPVNKAVKYYNTLLNKTLSQTRTELKNATVIYLDTHKILLDLFQHPKSYGMKHGIKACCGYGGRPYNFNQKLFCGNTKVIGNFSTTAKACHDPHNYVSWDGIHATEAANHHIS 361          
BLAST of CX286960 vs. ExPASy Swiss-Prot
Match: GDL40_ARATH (GDSL esterase/lipase At2g27360 OS=Arabidopsis thaliana GN=At2g27360 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.463e-14
Identity = 47/154 (30.52%), Postives = 76/154 (49.35%), Query Frame = 3
Query:    6 LGARKFGVTSLPPLGCFPAARILFGNHGR-------GCVSRINIAAQQFNKKVNSSASNLQKQLPGLKIVIFDIFKPLFELVQSPSKFGFVE-ATRSCCGTGTTKRTVF--LCNQKSARTCPNASQYVFWDSVHPSEAANKVIADEMIVQGFAL 437
            +GAR F V    PLGC  A   L+    +       GC++ +N  +   N+++ +    L+   P + I+  D +  L  L+Q PSKFG ++    +CCG G      F   C  K    C + S+YV WD +H +EAA K I++ ++   +A+
Sbjct:  214 MGARTFLVPGNFPLGCSVAYLTLYETPNKEEYNPLTGCLTWLNDFSVYHNEQLQAELKRLRNLYPHVNIIYGDYYNTLLRLMQEPSKFGLMDRPLPACCGLGGPYNFTFSIKCGSKGVEYCSDPSKYVNWDGIHMTEAAYKWISEGVLTGPYAI 367          
BLAST of CX286960 vs. ExPASy Swiss-Prot
Match: GDL1_CARPA (GDSL esterase/lipase OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.463e-14
Identity = 43/137 (31.39%), Postives = 67/137 (48.91%), Query Frame = 3
Query:    3 GLGARKFGVTSLPPLGCFPAARILFGNHGRGCVSRINIAAQQFNKKVNSSASNLQKQLPGLKIVIFDIFKPLFELVQSPSKFGFVEATRSCCGTGTTKRTVFLCNQKSART--CPNASQYVFWDSVHPSEAANKVIA 407
            GLG RKF   +L PLGC P  +  F   G  C+   +  A Q N+ ++ +  NL + L G   +I+D F      +  P+ +G+     +CCGTG+     F C  K+  +  C     Y+F+D  H +E  N+ +A
Sbjct:  187 GLGGRKFAFQNLAPLGCLPIVKQDFKT-GNFCLPLASNLAAQHNQLLSETLENLSETLDGFNYIIYDYFNSSLRRMARPNNYGYFTTNLACCGTGS--HDAFGCGFKNVHSNLCSYQRGYMFFDGRHNAEKTNEAVA 320          
BLAST of CX286960 vs. ExPASy Swiss-Prot
Match: GDL79_ARATH (GDSL esterase/lipase At5g33370 OS=Arabidopsis thaliana GN=At5g33370 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.217e-14
Identity = 42/138 (30.43%), Postives = 69/138 (50.00%), Query Frame = 3
Query:    6 LGARKFGVTSLPPLGCFPAARILFGNHGRGCVSRINIAAQQFNKKVNSSASNLQKQLPGLKIVIFDIFKPLFELVQSPSKFGFVEATRSCCGTGTTKRTVFLCNQKSARTCPNASQYVFWDSVHPSEAANKVIADEMI 419
            LGAR+  VT   P+GC PA       +G  C + +  AA  FN ++    ++L  ++     +  +  +   + +  P  +GFV +  +CCG G     + LC   S   CPN   + FWD  HPSE A+++IA +++
Sbjct:  210 LGARRVLVTGTGPMGCVPAELAQRSRNGE-CATELQRAASLFNPQLIQMITDLNNEVGSSAFIAANTQQMHMDFISDPQAYGFVTSKVACCGQGPYNG-IGLCTPLS-NLCPNRDLFAFWDPFHPSEKASRIIAQQIL 344          
The following BLAST results are available for this feature:
BLAST of CX286960 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 90
Match NameE-valueIdentityDescription
EXL6_ARATH1.306e-1532.39GDSL esterase/lipase EXL6 OS=Arabidopsis thaliana ... [more]
GLIP6_ARATH2.228e-1527.61GDSL esterase/lipase 6 OS=Arabidopsis thaliana GN=... [more]
GDL17_ARATH2.909e-1532.85GDSL esterase/lipase At1g33811 OS=Arabidopsis thal... [more]
GDL14_ARATH3.800e-1533.08GDSL esterase/lipase At1g29660 OS=Arabidopsis thal... [more]
GLIP3_ARATH8.465e-1532.47GDSL esterase/lipase 3 OS=Arabidopsis thaliana GN=... [more]
LIP4_ARATH1.106e-1427.27GDSL esterase/lipase LIP-4 OS=Arabidopsis thaliana... [more]
GDL61_ARATH1.106e-1429.80GDSL esterase/lipase At4g01130 OS=Arabidopsis thal... [more]
GDL40_ARATH2.463e-1430.52GDSL esterase/lipase At2g27360 OS=Arabidopsis thal... [more]
GDL1_CARPA2.463e-1431.39GDSL esterase/lipase OS=Carica papaya PE=1 SV=1[more]
GDL79_ARATH3.217e-1430.43GDSL esterase/lipase At5g33370 OS=Arabidopsis thal... [more]

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Properties
Property NameValue
Genbank descriptionC01003A06SK Veg1 Citrus clementina cDNA clone C01003A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286960 ID=CX286960; Name=CX286960; organism=Citrus clementina; type=EST; length=577bp
ATGGATTGGGAGCAAGGAAATTTGGAGTCACTTCATTGCCACCGCTGGGT
TGCTTTCCCGCAGCAAGAATTTTATTCGGTAATCATGGAAGGGGCTGTGT
CTCTAGAATCAATATTGCTGCTCAACAATTTAATAAGAAGGTCAACTCTT
CAGCATCAAATCTCCAAAAGCAACTTCCTGGTCTGAAAATTGTGATTTTC
GACATTTTCAAGCCACTCTTTGAACTTGTCCAGTCCCCTTCAAAATTTGG
CTTCGTGGAAGCAACAAGAAGTTGCTGTGGAACAGGAACTACAAAGAGAA
CTGTATTTCTGTGCAATCAAAAGTCAGCTAGAACATGCCCCAATGCCTCC
CAGTATGTGTTCTGGGACAGTGTTCATCCTTCTGAGGCTGCTAATAAGGT
TATTGCCGACGAAATGATTGTTCAAGGATTTGCCCTTATCTGAAGAGGAT
ATCTAGTCCACAAATATGACCAACATTTCTGTTCAGGTTTCTTCACCCTC
TAGGTATCTGGGCCTCAGATTATCTATTTGTTCGTTTTTCATTTCAAAAA
AAAAAAAAAAAAAAGGGGGGGCCCGGT
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