CX286967

Overview
NameCX286967
Unique NameCX286967
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length623
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX286967 vs. ExPASy Swiss-Prot
Match: RS9_PROMS (30S ribosomal protein S9 OS=Prochlorococcus marinus (strain AS9601) GN=rpsI PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.301e-30
Identity = 71/121 (58.68%), Postives = 82/121 (67.77%), Query Frame = 2
Query:  260 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQ 622
            +GTGRRK ++ARV L  G G   IN R   +YL  NPL L  IK PL TLG E SYD+ V   GGGL+GQA AI  G ARAL ++S D+R PLK EG L+RD R  ER+K GL KARKAPQ
Sbjct:   12 WGTGRRKTSVARVRLIPGNGLIKINGRSGDDYLNFNPLHLNSIKAPLQTLGLENSYDILVNVFGGGLTGQADAIKQGAARALCELSPDNRKPLKTEGHLSRDPRAKERRKYGLKKARKAPQ 132          
BLAST of CX286967 vs. ExPASy Swiss-Prot
Match: RS9_PROM5 (30S ribosomal protein S9 OS=Prochlorococcus marinus (strain MIT 9515) GN=rpsI PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.301e-30
Identity = 70/121 (57.85%), Postives = 82/121 (67.77%), Query Frame = 2
Query:  260 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQ 622
            +GTGRRK ++ARV L  G G+  IN R   +YL  NP  L  +K PL TLG E SYD+FV   GGGL+GQA AI  G ARAL  +S D+R PLK EG L+RD R  ER+K GL KARKAPQ
Sbjct:   12 WGTGRRKTSVARVRLIPGNGQIKINGRSGDDYLNFNPSHLNSVKAPLQTLGLENSYDIFVNVFGGGLTGQADAIKQGAARALCDLSPDNRKPLKTEGHLSRDPRAKERRKYGLKKARKAPQ 132          
BLAST of CX286967 vs. ExPASy Swiss-Prot
Match: RR9_GRATL (30S ribosomal protein S9, chloroplastic OS=Gracilaria tenuistipitata var. liui GN=rps9 PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.301e-30
Identity = 69/120 (57.50%), Postives = 86/120 (71.67%), Query Frame = 2
Query:  263 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQ 622
            GTGRRK +IARV L  G+GK IIN    + YLQ +P +L+    PL  LG    YD++VK  GGGL+GQA AI LG+ARAL +++ D+R+ LK EG LTRD+R+ ERKK GL KARKAPQ
Sbjct:   14 GTGRRKTSIARVKLVPGSGKLIINGLPGESYLQFSPNYLRVSYSPLKILGLNKEYDIYVKTEGGGLTGQANAIRLGLARALCRMNPDNRTTLKAEGFLTRDARIKERKKYGLRKARKAPQ 133          
BLAST of CX286967 vs. ExPASy Swiss-Prot
Match: RS9_PROMM (30S ribosomal protein S9 OS=Prochlorococcus marinus (strain MIT 9313) GN=rpsI PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.700e-30
Identity = 69/121 (57.02%), Postives = 81/121 (66.94%), Query Frame = 2
Query:  260 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQ 622
            +GTGRRK ++ARV L  G+G   IN R    YL  NP +L  +K PL TLG    YDV V  HGGGL+GQA AI  G ARAL ++S D+R PLK EG L+RD R  ER+K GL KARKAPQ
Sbjct:   11 WGTGRRKTSVARVRLVPGSGTITINGRPGDHYLNFNPAYLAAVKAPLQTLGLNEQYDVLVNVHGGGLTGQADAIKQGAARALCELSADNRKPLKTEGHLSRDPRAKERRKYGLKKARKAPQ 131          
BLAST of CX286967 vs. ExPASy Swiss-Prot
Match: RS9_PROM0 (30S ribosomal protein S9 OS=Prochlorococcus marinus (strain MIT 9301) GN=rpsI PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.700e-30
Identity = 71/121 (58.68%), Postives = 83/121 (68.60%), Query Frame = 2
Query:  260 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQ 622
            +GTGRRK ++ARV L  G G   IN R   +YL  NPL L  IK PL TLG E SYD++V   GGGL+GQA AI  G ARAL ++S D+R PLK EG L+RD R  ER+K GL KARKAPQ
Sbjct:   12 WGTGRRKTSVARVRLIPGNGLIKINGRAGDDYLNFNPLHLNSIKAPLQTLGLENSYDMYVNVFGGGLTGQADAIKQGAARALCELSPDNRKPLKTEGHLSRDPRAKERRKYGLKKARKAPQ 132          
BLAST of CX286967 vs. ExPASy Swiss-Prot
Match: RS9_PROMA (30S ribosomal protein S9 OS=Prochlorococcus marinus GN=rpsI PE=3 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 2.220e-30
Identity = 70/125 (56.00%), Postives = 84/125 (67.20%), Query Frame = 2
Query:  248 AQTIFGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQ 622
            A   +GTGRRK ++ARV L  GTGK  IN R    YL  NP +L  +K PL TLG   +YDV V  +GGGL+GQ+ AI  G ARAL ++S D+R PLK EG L+RD R  ER+K GL KARKAPQ
Sbjct:    8 AVVYWGTGRRKTSVARVRLIPGTGKITINGRPGDHYLNFNPAYLSAVKAPLHTLGLGEAYDVLVNVYGGGLTGQSDAIKQGAARALCELSVDNRKPLKTEGHLSRDPRAKERRKYGLKKARKAPQ 132          
BLAST of CX286967 vs. ExPASy Swiss-Prot
Match: RS9_SYNS9 (30S ribosomal protein S9 OS=Synechococcus sp. (strain CC9902) GN=rpsI PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.899e-30
Identity = 68/121 (56.20%), Postives = 81/121 (66.94%), Query Frame = 2
Query:  260 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQ 622
            +GTGRRK ++ARV L  G G   IN R    YL  NP ++  +K PL TLG  T YDV V  HGGGL+GQ+ AI  G ARAL ++S D+R PLK EG L+RD R  ER+K GL KARKAPQ
Sbjct:    9 WGTGRRKTSVARVRLVPGNGTITINGRPGDNYLNYNPAYIAAVKAPLETLGLSTEYDVLVNVHGGGLTGQSGAIKQGAARALCELSADNRKPLKTEGHLSRDPRAKERRKYGLKKARKAPQ 129          
BLAST of CX286967 vs. ExPASy Swiss-Prot
Match: RS9_SYNS3 (30S ribosomal protein S9 OS=Synechococcus sp. (strain CC9311) GN=rpsI PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 4.945e-30
Identity = 69/121 (57.02%), Postives = 80/121 (66.12%), Query Frame = 2
Query:  260 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQ 622
            +GTGRRK ++ARV L  G G   IN R    YL  NP +L  +K PL TLG  T YDV V   GGGL+GQA AI  G ARAL ++S D+R PLK EG L+RD R  ER+K GL KARKAPQ
Sbjct:   11 WGTGRRKTSVARVRLVPGNGTITINGRPGDNYLNYNPAYLAAVKAPLQTLGLSTEYDVLVNVRGGGLTGQADAIKQGAARALCELSVDNRKPLKTEGHLSRDPRAKERRKYGLKKARKAPQ 131          
BLAST of CX286967 vs. ExPASy Swiss-Prot
Match: RS9_ACAM1 (30S ribosomal protein S9 OS=Acaryochloris marina (strain MBIC 11017) GN=rpsI PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 4.945e-30
Identity = 70/120 (58.33%), Postives = 81/120 (67.50%), Query Frame = 2
Query:  263 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQ 622
            GTGRRK +I RV L  G+G   IN +    YLQ NP ++   K PL +LG E  YDV V A GGGL+GQA AI LGVARAL ++  ++R PLK EG LTRD R  ERKK GL KARKAPQ
Sbjct:   14 GTGRRKSSIVRVRLVPGSGVMTINGKPGDLYLQFNPSYIANAKAPLESLGLENDYDVLVNARGGGLTGQADAIKLGVARALCELDPENRKPLKLEGYLTRDPRAKERKKYGLRKARKAPQ 133          
BLAST of CX286967 vs. ExPASy Swiss-Prot
Match: RS9_SYNPX (30S ribosomal protein S9 OS=Synechococcus sp. (strain WH8102) GN=rpsI PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 6.459e-30
Identity = 67/121 (55.37%), Postives = 81/121 (66.94%), Query Frame = 2
Query:  260 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQ 622
            +GTGRRK ++ARV L  G G   IN R    YL  NP ++  +K PL TLG  T YD+ V  HGGGL+GQ+ AI  G ARAL ++S D+R PLK EG L+RD R  ER+K GL KARKAPQ
Sbjct:    9 WGTGRRKTSVARVRLVPGNGTITINGRPGDNYLNYNPAYIAAVKAPLETLGLGTEYDILVNVHGGGLTGQSGAIKQGAARALCELSADNRKPLKTEGHLSRDPRAKERRKYGLKKARKAPQ 129          
The following BLAST results are available for this feature:
BLAST of CX286967 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS9_PROMS1.301e-3058.6830S ribosomal protein S9 OS=Prochlorococcus marinu... [more]
RS9_PROM51.301e-3057.8530S ribosomal protein S9 OS=Prochlorococcus marinu... [more]
RR9_GRATL1.301e-3057.5030S ribosomal protein S9, chloroplastic OS=Gracila... [more]
RS9_PROMM1.700e-3057.0230S ribosomal protein S9 OS=Prochlorococcus marinu... [more]
RS9_PROM01.700e-3058.6830S ribosomal protein S9 OS=Prochlorococcus marinu... [more]
RS9_PROMA2.220e-3056.0030S ribosomal protein S9 OS=Prochlorococcus marinu... [more]
RS9_SYNS92.899e-3056.2030S ribosomal protein S9 OS=Synechococcus sp. (str... [more]
RS9_SYNS34.945e-3057.0230S ribosomal protein S9 OS=Synechococcus sp. (str... [more]
RS9_ACAM14.945e-3058.3330S ribosomal protein S9 OS=Acaryochloris marina (... [more]
RS9_SYNPX6.459e-3055.3730S ribosomal protein S9 OS=Synechococcus sp. (str... [more]

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Properties
Property NameValue
Genbank descriptionC01003B02SK Veg1 Citrus clementina cDNA clone C01003B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286967 ID=CX286967; Name=CX286967; organism=Citrus clementina; type=EST; length=623bp
AATGGCAATGTCACCCGCAATATCTCCTCTCACATCTTCCCTCTCTTCCC
TTTCATTTTCCTCCCAAATTTCTCAGAAACCAGGCATCCCCTTTGTCTCA
TTACACAGGTCCAAATCGATATCCATCTCTCCAAAAAATGATAAAACCCC
AAAACTGGTAGTATCGGCCACAGAAGCTGCGCCAGCTGAACTGGAAACAA
CTGACCTCAAGAAATACGTCAAATCGAGGCTTCCCGGTGGCTTTGCGGCT
CAAACTATTTTTGGAACGGGCCGTCGGAAATGCGCCATTGCTCGTGTCGT
CCTCCAAGAAGGCACCGGCAAATTCATCATCAACTACCGCGATGCCAAGG
AATATCTTCAAGGCAATCCACTATGGCTACAGTATATAAAAGTCCCTTTG
GTAACTTTGGGTTATGAAACTAGCTATGATGTTTTTGTGAAAGCTCATGG
TGGCGGCCTCTCTGGTCAAGCTCAAGCAATAACACTCGGCGTTGCTCGTG
CATTGTTGAAGGTGAGCCAGGACCATAGATCCCCTCTGAAAAAGGAAGGC
CTTCTGACCAGAGATTCCAGAGTAGTAGAGAGGAAAAAAGCTGGACTCCA
TAAAGCCCGGAAAGCCCCACAAT
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