CX286967

Overview
NameCX286967
Unique NameCX286967
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length623
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX286967 vs. ExPASy Swiss-Prot
Match: RR9_ARATH (30S ribosomal protein S9, chloroplastic OS=Arabidopsis thaliana GN=RPS9 PE=2 SV=1)

HSP 1 Score: 261.536 bits (667), Expect = 2.426e-69
Identity = 130/140 (92.86%), Postives = 134/140 (95.71%), Query Frame = 2
Query:  203 DLKKYVKSRLPGGFAAQTIFGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQ 622
            +LKKYVKSRLPGGFAAQ I GTGRRKCAIARVVLQEGTGK IINYRDAKEYLQGNPLWLQY+KVPLVTLGYE SYD+FVKAHGGGLSGQAQAITLGVARALLKVS DHRSPLKKEGLLTRD+RVVERKKAGL KARKAPQ
Sbjct:   65 ELKKYVKSRLPGGFAAQKIIGTGRRKCAIARVVLQEGTGKVIINYRDAKEYLQGNPLWLQYVKVPLVTLGYENSYDIFVKAHGGGLSGQAQAITLGVARALLKVSADHRSPLKKEGLLTRDARVVERKKAGLKKARKAPQ 204          
BLAST of CX286967 vs. ExPASy Swiss-Prot
Match: RR9_SPIOL (30S ribosomal protein S9, chloroplastic (Fragment) OS=Spinacia oleracea GN=PRPS9 PE=1 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 2.271e-67
Identity = 124/140 (88.57%), Postives = 133/140 (95.00%), Query Frame = 2
Query:  203 DLKKYVKSRLPGGFAAQTIFGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQ 622
            DL+K+VKSRLPGGFAAQT+ GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQY+K PL TLGYET+YDVFVKAHGGGLSGQAQAI+LGVARALLKVS  HR+PLK+EGLLTRDSR+VERKK GL KARKAPQ
Sbjct:   54 DLEKFVKSRLPGGFAAQTVIGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYVKTPLATLGYETNYDVFVKAHGGGLSGQAQAISLGVARALLKVSASHRAPLKQEGLLTRDSRIVERKKPGLKKARKAPQ 193          
BLAST of CX286967 vs. ExPASy Swiss-Prot
Match: RS9_NOSP7 (30S ribosomal protein S9 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=rpsI PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.534e-34
Identity = 74/121 (61.16%), Postives = 87/121 (71.90%), Query Frame = 2
Query:  260 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQ 622
            +GTGRRK A+ARV L  GTG+  +N +D   Y Q NP +L  IK PL TLG E  YD+ VKA GGGL+GQA ++ LGVARAL ++  D+R PLK EG LTRD R  ERKK GLHKARKAPQ
Sbjct:   14 WGTGRRKNAVARVRLVPGTGQLTVNGKDGNLYFQFNPNYLGVIKAPLETLGLENEYDILVKAEGGGLTGQADSVRLGVARALCQLDPDNRPPLKTEGYLTRDPRAKERKKYGLHKARKAPQ 134          
BLAST of CX286967 vs. ExPASy Swiss-Prot
Match: RS9_THEEB (30S ribosomal protein S9 OS=Thermosynechococcus elongatus (strain BP-1) GN=rpsI PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 5.645e-34
Identity = 72/120 (60.00%), Postives = 89/120 (74.17%), Query Frame = 2
Query:  263 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQ 622
            GTGRRK A+ARV L  G+G+  IN R+  +YLQ NP++L  +K PL TLG E SYD++V A GGGL+GQA AI LG+ARAL ++  ++R PLK EG LTRD R  ER+K GL KARKAPQ
Sbjct:   14 GTGRRKSAVARVRLIPGSGQLWINGRNGADYLQNNPIYLNLVKAPLETLGLENSYDIYVNATGGGLTGQADAIRLGIARALCQLDIENRKPLKTEGYLTRDPRAKERRKYGLRKARKAPQ 133          
BLAST of CX286967 vs. ExPASy Swiss-Prot
Match: RS9_SYNP2 (30S ribosomal protein S9 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=rpsI PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 7.373e-34
Identity = 72/121 (59.50%), Postives = 88/121 (72.73%), Query Frame = 2
Query:  260 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQ 622
            +GTGRRK +IARV L  G+GK ++N R  ++Y    P +L  +K PL TLG E+ YD+ V AHGGGL+GQA A+ LGVARAL ++  D+R PLK EG LTRD R  ERKK GLHKARKAPQ
Sbjct:   13 WGTGRRKASIARVRLVPGSGKVVVNNRSGEDYFNRIPGYLAVLKSPLETLGLESEYDILVNAHGGGLTGQADAVKLGVARALCELDPDNRQPLKIEGYLTRDPRCKERKKYGLHKARKAPQ 133          
BLAST of CX286967 vs. ExPASy Swiss-Prot
Match: RS9_SYNJA (30S ribosomal protein S9 OS=Synechococcus sp. (strain JA-3-3Ab) GN=rpsI PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 4.779e-33
Identity = 75/121 (61.98%), Postives = 84/121 (69.42%), Query Frame = 2
Query:  260 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQ 622
            +GTGRRK A+ARV L  GTGK IIN R   +YLQ     L  +K PL  LG E SYD+ V+AHGGG+ GQA AI LGVARAL +V   +R PLK EG L RD R VERKK GL KARKAPQ
Sbjct:   13 WGTGRRKTAVARVRLVPGTGKLIINDRPGDQYLQYQEALLASVKAPLELLGLENSYDILVRAHGGGVHGQADAIKLGVARALCEVDPANRGPLKTEGYLKRDPRAVERKKYGLRKARKAPQ 133          
BLAST of CX286967 vs. ExPASy Swiss-Prot
Match: RS9_MICAN (30S ribosomal protein S9 OS=Microcystis aeruginosa (strain NIES-843) GN=rpsI PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 4.779e-33
Identity = 71/121 (58.68%), Postives = 86/121 (71.07%), Query Frame = 2
Query:  260 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQ 622
            +GTGRRK A+A V L  GTG   +N RD + +    P ++Q IK PL TLG E  YD+ VKA GGGL+GQA A+ LGVARAL +++ ++R PLK EG LTRD R  ERKK GLHKARKAPQ
Sbjct:   13 WGTGRRKSAVAAVRLVPGTGAITVNGRDGETHFNRIPTYIQTIKAPLETLGLENEYDIIVKAEGGGLTGQADAVKLGVARALCQLAPENRPPLKSEGYLTRDPRAKERKKYGLHKARKAPQ 133          
BLAST of CX286967 vs. ExPASy Swiss-Prot
Match: RS9_CYAA5 (30S ribosomal protein S9 OS=Cyanothece sp. (strain ATCC 51142) GN=rpsI PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 4.779e-33
Identity = 72/121 (59.50%), Postives = 87/121 (71.90%), Query Frame = 2
Query:  260 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQ 622
            +GTGRRK A+ARV L  G+G+ I+N +    Y    P +LQ IK PL TLG E  YD+ V AHGGGL+GQA A+ LGVARAL +++ ++R PLK EG LTRD R  ERKK GLHKARKAPQ
Sbjct:   13 WGTGRRKSAVARVRLVPGSGEIIVNKKPGNIYFNRIPDYLQAIKGPLETLGLENDYDILVNAHGGGLTGQADAVKLGVARALCELAPENRPPLKAEGYLTRDPRAKERKKYGLHKARKAPQ 133          
BLAST of CX286967 vs. ExPASy Swiss-Prot
Match: RS9_ANAVT (30S ribosomal protein S9 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rpsI PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 8.151e-33
Identity = 72/121 (59.50%), Postives = 86/121 (71.07%), Query Frame = 2
Query:  260 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQ 622
            +GTGRRK A+ARV L  GTG+ I+N +    Y Q N  +L  IK PL TLG E  YD+ VKA GGGL+GQA ++ LGVARAL ++  ++R PLK EG LTRD R  ERKK GLHKARKAPQ
Sbjct:   14 WGTGRRKSAVARVRLVPGTGQLIVNGKPGDLYFQFNANYLGVIKAPLETLGLENEYDILVKAEGGGLTGQADSVRLGVARALCQLDPENRPPLKTEGYLTRDPRAKERKKYGLHKARKAPQ 134          
BLAST of CX286967 vs. ExPASy Swiss-Prot
Match: RS9_ANASP (30S ribosomal protein S9 OS=Anabaena sp. (strain PCC 7120) GN=rpsI PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 8.151e-33
Identity = 72/121 (59.50%), Postives = 86/121 (71.07%), Query Frame = 2
Query:  260 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQ 622
            +GTGRRK A+ARV L  GTG+ I+N +    Y Q N  +L  IK PL TLG E  YD+ VKA GGGL+GQA ++ LGVARAL ++  ++R PLK EG LTRD R  ERKK GLHKARKAPQ
Sbjct:   14 WGTGRRKSAVARVRLVPGTGQLIVNGKPGDLYFQFNANYLGVIKAPLETLGLENEYDILVKAEGGGLTGQADSVRLGVARALCQLDPENRPPLKTEGYLTRDPRAKERKKYGLHKARKAPQ 134          
The following BLAST results are available for this feature:
BLAST of CX286967 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RR9_ARATH2.426e-6992.8630S ribosomal protein S9, chloroplastic OS=Arabido... [more]
RR9_SPIOL2.271e-6788.5730S ribosomal protein S9, chloroplastic (Fragment)... [more]
RS9_NOSP72.534e-3461.1630S ribosomal protein S9 OS=Nostoc punctiforme (st... [more]
RS9_THEEB5.645e-3460.0030S ribosomal protein S9 OS=Thermosynechococcus el... [more]
RS9_SYNP27.373e-3459.5030S ribosomal protein S9 OS=Synechococcus sp. (str... [more]
RS9_SYNJA4.779e-3361.9830S ribosomal protein S9 OS=Synechococcus sp. (str... [more]
RS9_MICAN4.779e-3358.6830S ribosomal protein S9 OS=Microcystis aeruginosa... [more]
RS9_CYAA54.779e-3359.5030S ribosomal protein S9 OS=Cyanothece sp. (strain... [more]
RS9_ANAVT8.151e-3359.5030S ribosomal protein S9 OS=Anabaena variabilis (s... [more]
RS9_ANASP8.151e-3359.5030S ribosomal protein S9 OS=Anabaena sp. (strain P... [more]

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Properties
Property NameValue
Genbank descriptionC01003B02SK Veg1 Citrus clementina cDNA clone C01003B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286967 ID=CX286967; Name=CX286967; organism=Citrus clementina; type=EST; length=623bp
AATGGCAATGTCACCCGCAATATCTCCTCTCACATCTTCCCTCTCTTCCC
TTTCATTTTCCTCCCAAATTTCTCAGAAACCAGGCATCCCCTTTGTCTCA
TTACACAGGTCCAAATCGATATCCATCTCTCCAAAAAATGATAAAACCCC
AAAACTGGTAGTATCGGCCACAGAAGCTGCGCCAGCTGAACTGGAAACAA
CTGACCTCAAGAAATACGTCAAATCGAGGCTTCCCGGTGGCTTTGCGGCT
CAAACTATTTTTGGAACGGGCCGTCGGAAATGCGCCATTGCTCGTGTCGT
CCTCCAAGAAGGCACCGGCAAATTCATCATCAACTACCGCGATGCCAAGG
AATATCTTCAAGGCAATCCACTATGGCTACAGTATATAAAAGTCCCTTTG
GTAACTTTGGGTTATGAAACTAGCTATGATGTTTTTGTGAAAGCTCATGG
TGGCGGCCTCTCTGGTCAAGCTCAAGCAATAACACTCGGCGTTGCTCGTG
CATTGTTGAAGGTGAGCCAGGACCATAGATCCCCTCTGAAAAAGGAAGGC
CTTCTGACCAGAGATTCCAGAGTAGTAGAGAGGAAAAAAGCTGGACTCCA
TAAAGCCCGGAAAGCCCCACAAT
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