CX286967

Overview
NameCX286967
Unique NameCX286967
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length623
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX286967 vs. ExPASy Swiss-Prot
Match: RS9_MYCH7 (30S ribosomal protein S9 OS=Mycoplasma hyopneumoniae (strain 7448) GN=rpsI PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.347e-27
Identity = 67/121 (55.37%), Postives = 86/121 (71.07%), Query Frame = 2
Query:  260 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQ 622
            +GTGRRK ++ARV L+ G G+F IN R AKEYL+ + L    ++ PL      + +++ V AHGGG+SGQA AI LG+ARALLKVS D+R  LK  G+LTRD+R  ERKK GL KAR+A Q
Sbjct:    9 YGTGRRKSSVARVTLKHGNGQFKINNRVAKEYLKSDILIKDALQ-PLSITNTVSEFNIRVNAHGGGISGQAGAIRLGIARALLKVSADYRPGLKVAGMLTRDARAKERKKFGLRKARRARQ 128          
BLAST of CX286967 vs. ExPASy Swiss-Prot
Match: RS9_MYCH2 (30S ribosomal protein S9 OS=Mycoplasma hyopneumoniae (strain 232) GN=rpsI PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.347e-27
Identity = 67/121 (55.37%), Postives = 86/121 (71.07%), Query Frame = 2
Query:  260 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQ 622
            +GTGRRK ++ARV L+ G G+F IN R AKEYL+ + L    ++ PL      + +++ V AHGGG+SGQA AI LG+ARALLKVS D+R  LK  G+LTRD+R  ERKK GL KAR+A Q
Sbjct:    9 YGTGRRKSSVARVTLKHGNGQFKINNRVAKEYLKSDILIKDALQ-PLSITNTVSEFNIRVNAHGGGISGQAGAIRLGIARALLKVSADYRPGLKVAGMLTRDARAKERKKFGLRKARRARQ 128          
BLAST of CX286967 vs. ExPASy Swiss-Prot
Match: RS9_STRU0 (30S ribosomal protein S9 OS=Streptococcus uberis (strain ATCC BAA-854 / 0140J) GN=rpsI PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.297e-27
Identity = 68/120 (56.67%), Postives = 80/120 (66.67%), Query Frame = 2
Query:  263 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQ 622
            GTGRRK A+ARV L  GTGK  +N +D +EY+    L L  I  P      E SYDVFV  +GGG  GQ+ AI  G+ARALL+V  D R  LK+ GLLTRD+R+VERKK GL KARKA Q
Sbjct:    8 GTGRRKNAVARVRLVPGTGKITVNSKDVEEYIPHADLRL-VINQPFAVTSTEGSYDVFVNVNGGGYGGQSGAIRHGIARALLQVDPDFRDSLKRAGLLTRDARMVERKKPGLKKARKASQ 126          
BLAST of CX286967 vs. ExPASy Swiss-Prot
Match: RS9_PETMO (30S ribosomal protein S9 OS=Petrotoga mobilis (strain DSM 10674 / SJ95) GN=rpsI PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.297e-27
Identity = 67/124 (54.03%), Postives = 80/124 (64.52%), Query Frame = 2
Query:  260 FGTGRRKCAIARVVLQEGTGKFIIN---YRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQ 622
            +GTGRRK A+ARV L+ G GK  IN   Y+   EYL+GN +W      PL        +D+ ++ +GGGLSGQA AI LG+ARALL   +  R  LKKEGLLTRD R VERKK GL KARK  Q
Sbjct:    8 YGTGRRKTAVARVHLRPGNGKIKINGKEYKSLVEYLRGNEVWEIEALKPLTVTSTNGQFDLVIRVNGGGLSGQAGAIRLGIARALLSYDESFRPILKKEGLLTRDPREVERKKYGLRKARKRAQ 131          
BLAST of CX286967 vs. ExPASy Swiss-Prot
Match: RS9_GEOTN (30S ribosomal protein S9 OS=Geobacillus thermodenitrificans (strain NG80-2) GN=rpsI PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.297e-27
Identity = 65/121 (53.72%), Postives = 83/121 (68.60%), Query Frame = 2
Query:  260 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQ 622
            +GTGRRK ++ARV L  G G+ I+N  D +EY+    L ++ +K PLV      SYDV V  HGGG +GQA AI  G+ARALL+V  + R+ LK+ GLLTRD+RV ERKK GL  AR+APQ
Sbjct:    7 YGTGRRKSSVARVRLVPGDGRIIVNKHDIREYIPSEAL-IEMVKQPLVLTETLGSYDVLVNVHGGGFAGQAGAIRHGIARALLEVDPEFRAVLKRAGLLTRDARVKERKKYGLKGARRAPQ 126          
BLAST of CX286967 vs. ExPASy Swiss-Prot
Match: RS9_BACST (30S ribosomal protein S9 OS=Bacillus stearothermophilus GN=rpsI PE=1 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 3.000e-27
Identity = 65/121 (53.72%), Postives = 84/121 (69.42%), Query Frame = 2
Query:  260 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQ 622
            +GTGRRK ++ARV L  G G+ I+N +D +EY+    L ++ +K PLV      SYDV V  HGGG +GQA AI  G+ARALL+V  + R+ LK+ GLLTRD+RV ERKK GL  AR+APQ
Sbjct:    7 YGTGRRKSSVARVRLVPGDGRIIVNKQDIREYIPTEAL-IEMVKQPLVLTETLGSYDVLVNVHGGGFAGQAGAIRHGIARALLQVDPEFRTVLKRAGLLTRDARVKERKKYGLKGARRAPQ 126          
BLAST of CX286967 vs. ExPASy Swiss-Prot
Match: RS9_BIFAA (30S ribosomal protein S9 OS=Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083) GN=rpsI PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.918e-27
Identity = 69/122 (56.56%), Postives = 84/122 (68.85%), Query Frame = 2
Query:  260 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQD-HRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQ 622
            +GTGRRK A+ARV L  GTGK+ IN R  +EY     L  + +  P+V L  E  +D  V   GGG +GQA AI LGVARAL  + +D +R+ LKK G LTRD+RVVERKKAGLHKAR+APQ
Sbjct:   39 YGTGRRKEAVARVRLVPGTGKWTINGRTLEEYFPAKLLQRE-VNSPIVLLKLEGKFDAIVLVDGGGTTGQAGAIRLGVARALNAIDRDANRAALKKAGFLTRDARVVERKKAGLHKARRAPQ 159          
BLAST of CX286967 vs. ExPASy Swiss-Prot
Match: RS9_STRS7 (30S ribosomal protein S9 OS=Streptococcus equi subsp. zooepidemicus (strain H70) GN=rpsI PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 5.117e-27
Identity = 68/120 (56.67%), Postives = 80/120 (66.67%), Query Frame = 2
Query:  263 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQ 622
            GTGRRK A+ARV L  GTGK  +N +D +EY+    L L  I  P      E SYDVFV   GGG +GQ+ AI  G+ARALL+V  D R  LK+ GLLTRD+R+VERKK GL KARKA Q
Sbjct:    8 GTGRRKNAVARVRLVPGTGKITVNKKDVEEYIPHADLRL-IINQPFAVTSTEGSYDVFVNVVGGGYAGQSGAIRHGIARALLQVDPDFRDSLKRAGLLTRDARMVERKKPGLKKARKASQ 126          
BLAST of CX286967 vs. ExPASy Swiss-Prot
Match: RS9_STRS2 (30S ribosomal protein S9 OS=Streptococcus suis (strain 98HAH33) GN=rpsI PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 5.117e-27
Identity = 67/120 (55.83%), Postives = 80/120 (66.67%), Query Frame = 2
Query:  263 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQ 622
            GTGRRK A+ARV L  GTGK  +N +D +EY+    L L  I  P      + SYDVFV  +GGG  GQ+ AI  G+ARALL+V  D R  LK+ GLLTRD+R+VERKK GL KARKA Q
Sbjct:    8 GTGRRKNAVARVRLVPGTGKITVNKKDVEEYIPHADLRL-VINQPFAVTSTQGSYDVFVNVNGGGYGGQSGAIRHGIARALLQVDPDFRDSLKRAGLLTRDARMVERKKPGLKKARKASQ 126          
BLAST of CX286967 vs. ExPASy Swiss-Prot
Match: RS9_STRMU (30S ribosomal protein S9 OS=Streptococcus mutans GN=rpsI PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 5.117e-27
Identity = 68/120 (56.67%), Postives = 80/120 (66.67%), Query Frame = 2
Query:  263 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQ 622
            GTGRRK A+ARV L  GTGK  +N +D +EY+    L L  I  P      E SYDVFV   GGG +GQ+ AI  G+ARALL+V  D R  LK+ GLLTRD+R+VERKK GL KARKA Q
Sbjct:    8 GTGRRKNAVARVRLVPGTGKITVNKKDVEEYIPHADLRL-VINQPFAVTSTEGSYDVFVNVVGGGYAGQSGAIRHGIARALLEVDPDFRDALKRAGLLTRDARMVERKKPGLKKARKASQ 126          
The following BLAST results are available for this feature:
BLAST of CX286967 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS9_MYCH71.347e-2755.3730S ribosomal protein S9 OS=Mycoplasma hyopneumoni... [more]
RS9_MYCH21.347e-2755.3730S ribosomal protein S9 OS=Mycoplasma hyopneumoni... [more]
RS9_STRU02.297e-2756.6730S ribosomal protein S9 OS=Streptococcus uberis (... [more]
RS9_PETMO2.297e-2754.0330S ribosomal protein S9 OS=Petrotoga mobilis (str... [more]
RS9_GEOTN2.297e-2753.7230S ribosomal protein S9 OS=Geobacillus thermodeni... [more]
RS9_BACST3.000e-2753.7230S ribosomal protein S9 OS=Bacillus stearothermop... [more]
RS9_BIFAA3.918e-2756.5630S ribosomal protein S9 OS=Bifidobacterium adoles... [more]
RS9_STRS75.117e-2756.6730S ribosomal protein S9 OS=Streptococcus equi sub... [more]
RS9_STRS25.117e-2755.8330S ribosomal protein S9 OS=Streptococcus suis (st... [more]
RS9_STRMU5.117e-2756.6730S ribosomal protein S9 OS=Streptococcus mutans G... [more]

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Properties
Property NameValue
Genbank descriptionC01003B02SK Veg1 Citrus clementina cDNA clone C01003B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286967 ID=CX286967; Name=CX286967; organism=Citrus clementina; type=EST; length=623bp
AATGGCAATGTCACCCGCAATATCTCCTCTCACATCTTCCCTCTCTTCCC
TTTCATTTTCCTCCCAAATTTCTCAGAAACCAGGCATCCCCTTTGTCTCA
TTACACAGGTCCAAATCGATATCCATCTCTCCAAAAAATGATAAAACCCC
AAAACTGGTAGTATCGGCCACAGAAGCTGCGCCAGCTGAACTGGAAACAA
CTGACCTCAAGAAATACGTCAAATCGAGGCTTCCCGGTGGCTTTGCGGCT
CAAACTATTTTTGGAACGGGCCGTCGGAAATGCGCCATTGCTCGTGTCGT
CCTCCAAGAAGGCACCGGCAAATTCATCATCAACTACCGCGATGCCAAGG
AATATCTTCAAGGCAATCCACTATGGCTACAGTATATAAAAGTCCCTTTG
GTAACTTTGGGTTATGAAACTAGCTATGATGTTTTTGTGAAAGCTCATGG
TGGCGGCCTCTCTGGTCAAGCTCAAGCAATAACACTCGGCGTTGCTCGTG
CATTGTTGAAGGTGAGCCAGGACCATAGATCCCCTCTGAAAAAGGAAGGC
CTTCTGACCAGAGATTCCAGAGTAGTAGAGAGGAAAAAAGCTGGACTCCA
TAAAGCCCGGAAAGCCCCACAAT
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