CX286967

Overview
NameCX286967
Unique NameCX286967
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length623
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX286967 vs. ExPASy Swiss-Prot
Match: RS9_STRP8 (30S ribosomal protein S9 OS=Streptococcus pyogenes serotype M18 GN=rpsI PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 6.684e-27
Identity = 68/120 (56.67%), Postives = 79/120 (65.83%), Query Frame = 2
Query:  263 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQ 622
            GTGRRK A+ARV L  GTGK  +N +D +EY+    L L  I  P      E SYDVFV   GGG  GQ+ AI  G+ARALL+V  D R  LK+ GLLTRD+R+VERKK GL KARKA Q
Sbjct:    8 GTGRRKNAVARVRLVPGTGKITVNKKDVEEYIPHADLRL-IINQPFAVTSTEGSYDVFVNVVGGGYGGQSGAIRHGIARALLQVDPDFRDSLKRAGLLTRDARMVERKKPGLKKARKASQ 126          
BLAST of CX286967 vs. ExPASy Swiss-Prot
Match: RS9_STRP6 (30S ribosomal protein S9 OS=Streptococcus pyogenes serotype M6 GN=rpsI PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 6.684e-27
Identity = 68/120 (56.67%), Postives = 79/120 (65.83%), Query Frame = 2
Query:  263 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQ 622
            GTGRRK A+ARV L  GTGK  +N +D +EY+    L L  I  P      E SYDVFV   GGG  GQ+ AI  G+ARALL+V  D R  LK+ GLLTRD+R+VERKK GL KARKA Q
Sbjct:    8 GTGRRKNAVARVRLVPGTGKITVNKKDVEEYIPHADLRL-IINQPFAVTSTEGSYDVFVNVVGGGYGGQSGAIRHGIARALLQVDPDFRDSLKRAGLLTRDARMVERKKPGLKKARKASQ 126          
BLAST of CX286967 vs. ExPASy Swiss-Prot
Match: RS9_STRP3 (30S ribosomal protein S9 OS=Streptococcus pyogenes serotype M3 GN=rpsI PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 6.684e-27
Identity = 68/120 (56.67%), Postives = 79/120 (65.83%), Query Frame = 2
Query:  263 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQ 622
            GTGRRK A+ARV L  GTGK  +N +D +EY+    L L  I  P      E SYDVFV   GGG  GQ+ AI  G+ARALL+V  D R  LK+ GLLTRD+R+VERKK GL KARKA Q
Sbjct:    8 GTGRRKNAVARVRLVPGTGKITVNKKDVEEYIPHADLRL-IINQPFAVTSTEGSYDVFVNVVGGGYGGQSGAIRHGIARALLQVDPDFRDSLKRAGLLTRDARMVERKKPGLKKARKASQ 126          
BLAST of CX286967 vs. ExPASy Swiss-Prot
Match: RS9_STRP1 (30S ribosomal protein S9 OS=Streptococcus pyogenes serotype M1 GN=rpsI PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 6.684e-27
Identity = 68/120 (56.67%), Postives = 79/120 (65.83%), Query Frame = 2
Query:  263 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQ 622
            GTGRRK A+ARV L  GTGK  +N +D +EY+    L L  I  P      E SYDVFV   GGG  GQ+ AI  G+ARALL+V  D R  LK+ GLLTRD+R+VERKK GL KARKA Q
Sbjct:    8 GTGRRKNAVARVRLVPGTGKITVNKKDVEEYIPHADLRL-IINQPFAVTSTEGSYDVFVNVVGGGYGGQSGAIRHGIARALLQVDPDFRDSLKRAGLLTRDARMVERKKPGLKKARKASQ 126          
BLAST of CX286967 vs. ExPASy Swiss-Prot
Match: RS9_ONYPE (30S ribosomal protein S9 OS=Onion yellows phytoplasma GN=rpsI PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 8.729e-27
Identity = 68/121 (56.20%), Postives = 84/121 (69.42%), Query Frame = 2
Query:  260 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQ 622
            FGTGRRK A+ARV+L  GTGK  IN RD ++YL      L+ I+ PL       ++DV V  +GGGLS QA AI LG+ARAL++   + R+ LKK GLLTRD+R VERKK GL KAR+APQ
Sbjct:    7 FGTGRRKSAVARVILTNGTGKITINTRDFEKYLPLPATRLEMIQ-PLELTEKREAFDVSVNVNGGGLSAQAGAIRLGIARALIESVPELRAILKKAGLLTRDARCVERKKYGLKKARRAPQ 126          
BLAST of CX286967 vs. ExPASy Swiss-Prot
Match: RS9_GEOKA (30S ribosomal protein S9 OS=Geobacillus kaustophilus GN=rpsI PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 8.729e-27
Identity = 65/121 (53.72%), Postives = 83/121 (68.60%), Query Frame = 2
Query:  260 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQ 622
            +GTGRRK ++ARV L  G G+ I+N RD +EY+    L ++ +K PLV      SYDV V   GGG +GQA AI  G+ARALL+V  + R+ LK+ GLLTRD+RV ERKK GL  AR+APQ
Sbjct:    7 YGTGRRKSSVARVRLVPGDGRIIVNKRDIREYIPTEAL-IEMVKQPLVLTETLGSYDVLVNVQGGGFAGQAGAIRHGIARALLEVDPEFRTVLKRAGLLTRDARVKERKKYGLKGARRAPQ 126          
BLAST of CX286967 vs. ExPASy Swiss-Prot
Match: RS9_STRSV (30S ribosomal protein S9 OS=Streptococcus sanguinis (strain SK36) GN=rpsI PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.140e-26
Identity = 69/120 (57.50%), Postives = 78/120 (65.00%), Query Frame = 2
Query:  263 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQ 622
            GTGRRK A+ARV L  GTGK  +N +D +EY+    L L  I  P        SYDVFV   GGG +GQA AI  G+ARALL+V  D R  LK+ GLLTRDSR VERKK GL KARKA Q
Sbjct:    8 GTGRRKNAVARVRLVPGTGKITVNKKDVEEYIPHADLRL-VINQPFAVTSTAGSYDVFVNVVGGGYAGQAGAIRHGIARALLQVDPDFRDSLKRAGLLTRDSRKVERKKPGLKKARKASQ 126          
BLAST of CX286967 vs. ExPASy Swiss-Prot
Match: RS9_LYSSC (30S ribosomal protein S9 OS=Lysinibacillus sphaericus (strain C3-41) GN=rpsI PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.140e-26
Identity = 66/120 (55.00%), Postives = 82/120 (68.33%), Query Frame = 2
Query:  263 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQ 622
            GTGRRK ++ARV L  GTGK +IN R+ +EY+    L  + IK PLV      SYD+ V  +GGG +GQA A+  G+ARALL+V  D R+ LK  GLLTRDSR+ ERKK GL  AR+APQ
Sbjct:    8 GTGRRKSSVARVRLVPGTGKIVINKREIEEYVPFAAL-REVIKQPLVATETTGSYDIHVNVNGGGYTGQAGAVRHGIARALLQVDPDFRAALKSAGLLTRDSRMKERKKPGLRGARRAPQ 126          
BLAST of CX286967 vs. ExPASy Swiss-Prot
Match: RS9_LISMO (30S ribosomal protein S9 OS=Listeria monocytogenes GN=rpsI PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.140e-26
Identity = 67/121 (55.37%), Postives = 83/121 (68.60%), Query Frame = 2
Query:  260 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQ 622
            +GTGRRK ++ARV L  G GK +IN RD ++Y+    L  + IK PLV      +YDV V  HGGG +GQA AI  GVARALL+V+ ++R  LK  GLLTRDSR+ ERKK GL  AR+APQ
Sbjct:    7 YGTGRRKSSVARVRLVPGDGKIVINNRDWEDYIPFAAL-REVIKQPLVATETLGNYDVLVNVHGGGYTGQAGAIRHGVARALLQVAPEYRPALKSAGLLTRDSRMKERKKPGLKGARRAPQ 126          
BLAST of CX286967 vs. ExPASy Swiss-Prot
Match: RS9_BIFLO (30S ribosomal protein S9 OS=Bifidobacterium longum GN=rpsI PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.140e-26
Identity = 70/130 (53.85%), Postives = 86/130 (66.15%), Query Frame = 2
Query:  236 GGFAAQTIFGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQD-HRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQ 622
            G  A +  +GTGRRK A+ARV L  G GK+ IN R  +EY     L  + +  P+V L  E  +D  V   GGG +GQA AI LGVARAL  + +D +R+ LKK G LTRD+RVVERKKAGLHKAR+APQ
Sbjct:   31 GTSAIEPGYGTGRRKEAVARVRLVPGDGKWTINGRTLEEYFPSKLLQRE-VNSPIVLLKLEGKFDAIVLVDGGGTTGQAGAIRLGVARALNAIDRDANRAALKKAGFLTRDARVVERKKAGLHKARRAPQ 159          
The following BLAST results are available for this feature:
BLAST of CX286967 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS9_STRP86.684e-2756.6730S ribosomal protein S9 OS=Streptococcus pyogenes... [more]
RS9_STRP66.684e-2756.6730S ribosomal protein S9 OS=Streptococcus pyogenes... [more]
RS9_STRP36.684e-2756.6730S ribosomal protein S9 OS=Streptococcus pyogenes... [more]
RS9_STRP16.684e-2756.6730S ribosomal protein S9 OS=Streptococcus pyogenes... [more]
RS9_ONYPE8.729e-2756.2030S ribosomal protein S9 OS=Onion yellows phytopla... [more]
RS9_GEOKA8.729e-2753.7230S ribosomal protein S9 OS=Geobacillus kaustophil... [more]
RS9_STRSV1.140e-2657.5030S ribosomal protein S9 OS=Streptococcus sanguini... [more]
RS9_LYSSC1.140e-2655.0030S ribosomal protein S9 OS=Lysinibacillus sphaeri... [more]
RS9_LISMO1.140e-2655.3730S ribosomal protein S9 OS=Listeria monocytogenes... [more]
RS9_BIFLO1.140e-2653.8530S ribosomal protein S9 OS=Bifidobacterium longum... [more]

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Properties
Property NameValue
Genbank descriptionC01003B02SK Veg1 Citrus clementina cDNA clone C01003B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286967 ID=CX286967; Name=CX286967; organism=Citrus clementina; type=EST; length=623bp
AATGGCAATGTCACCCGCAATATCTCCTCTCACATCTTCCCTCTCTTCCC
TTTCATTTTCCTCCCAAATTTCTCAGAAACCAGGCATCCCCTTTGTCTCA
TTACACAGGTCCAAATCGATATCCATCTCTCCAAAAAATGATAAAACCCC
AAAACTGGTAGTATCGGCCACAGAAGCTGCGCCAGCTGAACTGGAAACAA
CTGACCTCAAGAAATACGTCAAATCGAGGCTTCCCGGTGGCTTTGCGGCT
CAAACTATTTTTGGAACGGGCCGTCGGAAATGCGCCATTGCTCGTGTCGT
CCTCCAAGAAGGCACCGGCAAATTCATCATCAACTACCGCGATGCCAAGG
AATATCTTCAAGGCAATCCACTATGGCTACAGTATATAAAAGTCCCTTTG
GTAACTTTGGGTTATGAAACTAGCTATGATGTTTTTGTGAAAGCTCATGG
TGGCGGCCTCTCTGGTCAAGCTCAAGCAATAACACTCGGCGTTGCTCGTG
CATTGTTGAAGGTGAGCCAGGACCATAGATCCCCTCTGAAAAAGGAAGGC
CTTCTGACCAGAGATTCCAGAGTAGTAGAGAGGAAAAAAGCTGGACTCCA
TAAAGCCCGGAAAGCCCCACAAT
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