CX286967

Overview
NameCX286967
Unique NameCX286967
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length623
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX286967 vs. ExPASy Swiss-Prot
Match: RS9_BIFLI (30S ribosomal protein S9 OS=Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / NCTC 11817 / S12) GN=rpsI PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.140e-26
Identity = 70/130 (53.85%), Postives = 86/130 (66.15%), Query Frame = 2
Query:  236 GGFAAQTIFGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQD-HRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQ 622
            G  A +  +GTGRRK A+ARV L  G GK+ IN R  +EY     L  + +  P+V L  E  +D  V   GGG +GQA AI LGVARAL  + +D +R+ LKK G LTRD+RVVERKKAGLHKAR+APQ
Sbjct:   31 GTSAIEPGYGTGRRKEAVARVRLVPGDGKWTINGRTLEEYFPSKLLQRE-VNSPIVLLKLEGKFDAIVLVDGGGTTGQAGAIRLGVARALNAIDRDANRAALKKAGFLTRDARVVERKKAGLHKARRAPQ 159          
BLAST of CX286967 vs. ExPASy Swiss-Prot
Match: RS9_BIFLD (30S ribosomal protein S9 OS=Bifidobacterium longum (strain DJO10A) GN=rpsI PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.140e-26
Identity = 70/130 (53.85%), Postives = 86/130 (66.15%), Query Frame = 2
Query:  236 GGFAAQTIFGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQD-HRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQ 622
            G  A +  +GTGRRK A+ARV L  G GK+ IN R  +EY     L  + +  P+V L  E  +D  V   GGG +GQA AI LGVARAL  + +D +R+ LKK G LTRD+RVVERKKAGLHKAR+APQ
Sbjct:   31 GTSAIEPGYGTGRRKEAVARVRLVPGDGKWTINGRTLEEYFPSKLLQRE-VNSPIVLLKLEGKFDAIVLVDGGGTTGQAGAIRLGVARALNAIDRDANRAALKKAGFLTRDARVVERKKAGLHKARRAPQ 159          
BLAST of CX286967 vs. ExPASy Swiss-Prot
Match: RS9_BACA2 (30S ribosomal protein S9 OS=Bacillus amyloliquefaciens (strain FZB42) GN=rpsI PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.489e-26
Identity = 62/121 (51.24%), Postives = 84/121 (69.42%), Query Frame = 2
Query:  260 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQ 622
            +GTGRRK ++ARV L  G G+ ++N R+  E++  +P  ++ IK PL       +YDV V  HGGGLSGQA AI  G+ARALL+   ++R+ LK+ GLLTRD+R+ ERKK GL  AR+APQ
Sbjct:    7 YGTGRRKSSVARVRLVPGEGRIVVNNREISEHIP-SPALIEDIKQPLTLTETAGTYDVLVNVHGGGLSGQAGAIRHGIARALLEADPEYRATLKRAGLLTRDARMKERKKYGLKGARRAPQ 126          
BLAST of CX286967 vs. ExPASy Swiss-Prot
Match: RS9_ANOFW (30S ribosomal protein S9 OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=rpsI PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.489e-26
Identity = 65/121 (53.72%), Postives = 83/121 (68.60%), Query Frame = 2
Query:  260 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQ 622
            +GTGRRK ++ARV L  G G+ I+N RD ++Y+    L ++ +K PLV      SYDV V   GGG +GQA AI  G+ARALL+V  ++R  LK+ GLLTRDSRV ERKK GL  AR+APQ
Sbjct:    7 YGTGRRKSSVARVRLVPGEGRIIVNGRDIRDYVPYESL-VEVVKQPLVLTETFGSYDVLVNVSGGGFTGQAGAIRHGIARALLQVDPEYRQTLKRAGLLTRDSRVKERKKYGLKGARRAPQ 126          
BLAST of CX286967 vs. ExPASy Swiss-Prot
Match: RS9_TROWT (30S ribosomal protein S9 OS=Tropheryma whipplei (strain Twist) GN=rpsI PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.945e-26
Identity = 69/121 (57.02%), Postives = 78/121 (64.46%), Query Frame = 2
Query:  263 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVS-QDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQ 622
            G GRRK A ARV L  G G F++N RD  EY     L  Q+   PL  L    SYDV V  HGGG SGQA A+ LG+ARAL  +  +++R PLK  G LTRDSRV ERKKAGL KARKAPQ
Sbjct:   31 GLGRRKSATARVYLSPGEGVFVVNGRDINEYFTSK-LHRQFACQPLKILDLLGSYDVKVTLHGGGASGQAGAVRLGIARALNTIDPENNRKPLKSAGFLTRDSRVKERKKAGLKKARKAPQ 150          
BLAST of CX286967 vs. ExPASy Swiss-Prot
Match: RS9_TROW8 (30S ribosomal protein S9 OS=Tropheryma whipplei (strain TW08/27) GN=rpsI PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.945e-26
Identity = 69/121 (57.02%), Postives = 78/121 (64.46%), Query Frame = 2
Query:  263 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVS-QDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQ 622
            G GRRK A ARV L  G G F++N RD  EY     L  Q+   PL  L    SYDV V  HGGG SGQA A+ LG+ARAL  +  +++R PLK  G LTRDSRV ERKKAGL KARKAPQ
Sbjct:   31 GLGRRKSATARVYLSPGEGVFVVNGRDINEYFTSK-LHRQFACQPLKILDLLGSYDVKVTLHGGGASGQAGAVRLGIARALNTIDPENNRKPLKSAGFLTRDSRVKERKKAGLKKARKAPQ 150          
BLAST of CX286967 vs. ExPASy Swiss-Prot
Match: RS9_STRGC (30S ribosomal protein S9 OS=Streptococcus gordonii (strain Challis / ATCC 35105 / CH1 / DL1 / V288) GN=rpsI PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.945e-26
Identity = 67/120 (55.83%), Postives = 78/120 (65.00%), Query Frame = 2
Query:  263 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQ 622
            GTGRRK A+ARV L  GTGK  +N +D +EY+    L L  I  P         YDVFV  +GGG  GQA AI  G+ARALL+V  D R  LK+ GLLTRD+R+VERKK GL KARKA Q
Sbjct:    8 GTGRRKNAVARVRLVPGTGKITVNKKDVEEYIPHADLRL-VINQPFAVTSTVGQYDVFVNVNGGGYGGQAGAIRHGIARALLQVDPDFRDSLKRAGLLTRDARMVERKKPGLKKARKASQ 126          
BLAST of CX286967 vs. ExPASy Swiss-Prot
Match: RS9_STRA5 (30S ribosomal protein S9 OS=Streptococcus agalactiae serotype V GN=rpsI PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.945e-26
Identity = 67/120 (55.83%), Postives = 80/120 (66.67%), Query Frame = 2
Query:  263 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQ 622
            GTGRRK A+ARV L  GTGK  IN +D +EY+    L L  I  P      + SYDVFV   GGG +GQ+ AI  G++RALL+V  D R  LK+ GLLTRD+R+VERKK GL KARKA Q
Sbjct:    8 GTGRRKNAVARVRLVPGTGKITINKKDVEEYIPHADLRL-VINQPFAVTSTQGSYDVFVNVVGGGYAGQSGAIRHGISRALLEVDPDFRDSLKRAGLLTRDARMVERKKPGLKKARKASQ 126          
BLAST of CX286967 vs. ExPASy Swiss-Prot
Match: RS9_STRA3 (30S ribosomal protein S9 OS=Streptococcus agalactiae serotype III GN=rpsI PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.945e-26
Identity = 67/120 (55.83%), Postives = 80/120 (66.67%), Query Frame = 2
Query:  263 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQ 622
            GTGRRK A+ARV L  GTGK  IN +D +EY+    L L  I  P      + SYDVFV   GGG +GQ+ AI  G++RALL+V  D R  LK+ GLLTRD+R+VERKK GL KARKA Q
Sbjct:    8 GTGRRKNAVARVRLVPGTGKITINKKDVEEYIPHADLRL-VINQPFAVTSTQGSYDVFVNVVGGGYAGQSGAIRHGISRALLEVDPDFRDSLKRAGLLTRDARMVERKKPGLKKARKASQ 126          
BLAST of CX286967 vs. ExPASy Swiss-Prot
Match: RS9_STRA1 (30S ribosomal protein S9 OS=Streptococcus agalactiae serotype Ia GN=rpsI PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.945e-26
Identity = 67/120 (55.83%), Postives = 80/120 (66.67%), Query Frame = 2
Query:  263 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQ 622
            GTGRRK A+ARV L  GTGK  IN +D +EY+    L L  I  P      + SYDVFV   GGG +GQ+ AI  G++RALL+V  D R  LK+ GLLTRD+R+VERKK GL KARKA Q
Sbjct:    8 GTGRRKNAVARVRLVPGTGKITINKKDVEEYIPHADLRL-VINQPFAVTSTQGSYDVFVNVVGGGYAGQSGAIRHGISRALLEVDPDFRDSLKRAGLLTRDARMVERKKPGLKKARKASQ 126          
The following BLAST results are available for this feature:
BLAST of CX286967 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS9_BIFLI1.140e-2653.8530S ribosomal protein S9 OS=Bifidobacterium longum... [more]
RS9_BIFLD1.140e-2653.8530S ribosomal protein S9 OS=Bifidobacterium longum... [more]
RS9_BACA21.489e-2651.2430S ribosomal protein S9 OS=Bacillus amyloliquefac... [more]
RS9_ANOFW1.489e-2653.7230S ribosomal protein S9 OS=Anoxybacillus flavithe... [more]
RS9_TROWT1.945e-2657.0230S ribosomal protein S9 OS=Tropheryma whipplei (s... [more]
RS9_TROW81.945e-2657.0230S ribosomal protein S9 OS=Tropheryma whipplei (s... [more]
RS9_STRGC1.945e-2655.8330S ribosomal protein S9 OS=Streptococcus gordonii... [more]
RS9_STRA51.945e-2655.8330S ribosomal protein S9 OS=Streptococcus agalacti... [more]
RS9_STRA31.945e-2655.8330S ribosomal protein S9 OS=Streptococcus agalacti... [more]
RS9_STRA11.945e-2655.8330S ribosomal protein S9 OS=Streptococcus agalacti... [more]

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Properties
Property NameValue
Genbank descriptionC01003B02SK Veg1 Citrus clementina cDNA clone C01003B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286967 ID=CX286967; Name=CX286967; organism=Citrus clementina; type=EST; length=623bp
AATGGCAATGTCACCCGCAATATCTCCTCTCACATCTTCCCTCTCTTCCC
TTTCATTTTCCTCCCAAATTTCTCAGAAACCAGGCATCCCCTTTGTCTCA
TTACACAGGTCCAAATCGATATCCATCTCTCCAAAAAATGATAAAACCCC
AAAACTGGTAGTATCGGCCACAGAAGCTGCGCCAGCTGAACTGGAAACAA
CTGACCTCAAGAAATACGTCAAATCGAGGCTTCCCGGTGGCTTTGCGGCT
CAAACTATTTTTGGAACGGGCCGTCGGAAATGCGCCATTGCTCGTGTCGT
CCTCCAAGAAGGCACCGGCAAATTCATCATCAACTACCGCGATGCCAAGG
AATATCTTCAAGGCAATCCACTATGGCTACAGTATATAAAAGTCCCTTTG
GTAACTTTGGGTTATGAAACTAGCTATGATGTTTTTGTGAAAGCTCATGG
TGGCGGCCTCTCTGGTCAAGCTCAAGCAATAACACTCGGCGTTGCTCGTG
CATTGTTGAAGGTGAGCCAGGACCATAGATCCCCTCTGAAAAAGGAAGGC
CTTCTGACCAGAGATTCCAGAGTAGTAGAGAGGAAAAAAGCTGGACTCCA
TAAAGCCCGGAAAGCCCCACAAT
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