CX286967 | Citrus Genome Database

Overview


Name	CX286967
Unique Name	CX286967
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	623

Libraries


Library Name	Type
Veg1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CX286967 vs. ExPASy Swiss-Prot
Match: RS9_STRPN (30S ribosomal protein S9 OS=Streptococcus pneumoniae GN=rpsI PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.317e-26
Identity = 68/120 (56.67%), Postives = 78/120 (65.00%), Query Frame = 2

Query:  263 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQ 622
            GTGRRK A+ARV L  GTGK  +N +D +EY+    L L  I  P        SYDVFV   GGG +GQ+ AI  G+ARALL+V  D R  LK+ GLLTRDSR VERKK GL KARKA Q
Sbjct:    8 GTGRRKNAVARVRLVPGTGKITVNKKDVEEYIPHADLRL-VINQPFAVTSTVGSYDVFVNVIGGGYAGQSGAIRHGIARALLQVDPDFRDSLKRAGLLTRDSRKVERKKPGLKKARKASQ 126

[Close]

BLAST of CX286967 vs. ExPASy Swiss-Prot
Match: RS9_STRPJ (30S ribosomal protein S9 OS=Streptococcus pneumoniae (strain ATCC 700669 / Spain 23F-1) GN=rpsI PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.317e-26
Identity = 68/120 (56.67%), Postives = 78/120 (65.00%), Query Frame = 2

Query:  263 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQ 622
            GTGRRK A+ARV L  GTGK  +N +D +EY+    L L  I  P        SYDVFV   GGG +GQ+ AI  G+ARALL+V  D R  LK+ GLLTRDSR VERKK GL KARKA Q
Sbjct:    8 GTGRRKNAVARVRLVPGTGKITVNKKDVEEYIPHADLRL-VINQPFAVTSTVGSYDVFVNVIGGGYAGQSGAIRHGIARALLQVDPDFRDSLKRAGLLTRDSRKVERKKPGLKKARKASQ 126

[Close]

BLAST of CX286967 vs. ExPASy Swiss-Prot
Match: RS9_STRPI (30S ribosomal protein S9 OS=Streptococcus pneumoniae (strain Hungary19A-6) GN=rpsI PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.317e-26
Identity = 68/120 (56.67%), Postives = 78/120 (65.00%), Query Frame = 2

Query:  263 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQ 622
            GTGRRK A+ARV L  GTGK  +N +D +EY+    L L  I  P        SYDVFV   GGG +GQ+ AI  G+ARALL+V  D R  LK+ GLLTRDSR VERKK GL KARKA Q
Sbjct:    8 GTGRRKNAVARVRLVPGTGKITVNKKDVEEYIPHADLRL-VINQPFAVTSTVGSYDVFVNVVGGGYAGQSGAIRHGIARALLQVDPDFRDSLKRAGLLTRDSRKVERKKPGLKKARKASQ 126

[Close]

BLAST of CX286967 vs. ExPASy Swiss-Prot
Match: RS9_STRP7 (30S ribosomal protein S9 OS=Streptococcus pneumoniae (strain 70585) GN=rpsI PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.317e-26
Identity = 68/120 (56.67%), Postives = 78/120 (65.00%), Query Frame = 2

Query:  263 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQ 622
            GTGRRK A+ARV L  GTGK  +N +D +EY+    L L  I  P        SYDVFV   GGG +GQ+ AI  G+ARALL+V  D R  LK+ GLLTRDSR VERKK GL KARKA Q
Sbjct:    8 GTGRRKNAVARVRLVPGTGKITVNKKDVEEYIPHADLRL-VINQPFAVTSTVGSYDVFVNVVGGGYAGQSGAIRHGIARALLQVDPDFRDSLKRAGLLTRDSRKVERKKPGLKKARKASQ 126

[Close]

BLAST of CX286967 vs. ExPASy Swiss-Prot
Match: RS9_STRP4 (30S ribosomal protein S9 OS=Streptococcus pneumoniae serotype 19F (strain G54) GN=rpsI PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.317e-26
Identity = 68/120 (56.67%), Postives = 78/120 (65.00%), Query Frame = 2

Query:  263 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQ 622
            GTGRRK A+ARV L  GTGK  +N +D +EY+    L L  I  P        SYDVFV   GGG +GQ+ AI  G+ARALL+V  D R  LK+ GLLTRDSR VERKK GL KARKA Q
Sbjct:    8 GTGRRKNAVARVRLVPGTGKITVNKKDVEEYIPHADLRL-VINQPFAVTSTVGSYDVFVNVVGGGYAGQSGAIRHGIARALLQVDPDFRDSLKRAGLLTRDSRKVERKKPGLKKARKASQ 126

[Close]

BLAST of CX286967 vs. ExPASy Swiss-Prot
Match: RS9_STRP2 (30S ribosomal protein S9 OS=Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466) GN=rpsI PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.317e-26
Identity = 68/120 (56.67%), Postives = 78/120 (65.00%), Query Frame = 2

Query:  263 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQ 622
            GTGRRK A+ARV L  GTGK  +N +D +EY+    L L  I  P        SYDVFV   GGG +GQ+ AI  G+ARALL+V  D R  LK+ GLLTRDSR VERKK GL KARKA Q
Sbjct:    8 GTGRRKNAVARVRLVPGTGKITVNKKDVEEYIPHADLRL-VINQPFAVTSTVGSYDVFVNVVGGGYAGQSGAIRHGIARALLQVDPDFRDSLKRAGLLTRDSRKVERKKPGLKKARKASQ 126

[Close]

BLAST of CX286967 vs. ExPASy Swiss-Prot
Match: RS9_MYCA1 (30S ribosomal protein S9 OS=Mycobacterium avium (strain 104) GN=rpsI PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.317e-26
Identity = 66/118 (55.93%), Postives = 77/118 (65.25%), Query Frame = 2

Query:  269 GRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQ 622
            GRRK A+ RV L  GTGKF +N R  + Y   N +  Q IK PLVT+    S+D++   HGGG SGQA A+ LG+ARAL+  S D R  LKK G LTRD R  ERKK GL KARKAPQ
Sbjct:   46 GRRKEAVVRVRLVPGTGKFNLNGRTLEGYFP-NKVHQQLIKAPLVTVDRVDSFDIYAHLHGGGPSGQAGALRLGIARALILASPDDRPALKKAGFLTRDPRATERKKYGLKKARKAPQ 162

[Close]

BLAST of CX286967 vs. ExPASy Swiss-Prot
Match: RS9_CLOD6 (30S ribosomal protein S9 OS=Clostridium difficile (strain 630) GN=rpsI PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.317e-26
Identity = 64/121 (52.89%), Postives = 79/121 (65.29%), Query Frame = 2

Query:  260 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQ 622
            +GTGRRK ++ARV L  G G  ++N R  + Y     L ++ +K PLV  G E  YDV VK  GGG +GQA AI  G++RALLK   D R  LKKEG LTRD+R+ ERKK GL  AR+APQ
Sbjct:    7 YGTGRRKSSVARVRLVAGEGNILVNGRALENYFNYETL-IRDVKQPLVLTGNENKYDVIVKVEGGGFTGQAGAIRHGISRALLKADLDLRPALKKEGFLTRDARMKERKKYGLKAARRAPQ 126

[Close]

BLAST of CX286967 vs. ExPASy Swiss-Prot
Match: RS9_AYWBP (30S ribosomal protein S9 OS=Aster yellows witches'-broom phytoplasma (strain AYWB) GN=rpsI PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.317e-26
Identity = 67/121 (55.37%), Postives = 83/121 (68.60%), Query Frame = 2

Query:  260 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQ 622
            FGTGRRK ++ARV+L  GTGK  IN RD ++YL      L+ I+ PL        +DV V  +GGGLS QA AI LG+ARAL++   + R+ LKK GLLTRD+R VERKK GL KAR+APQ
Sbjct:    7 FGTGRRKSSVARVILTNGTGKITINTRDFEKYLPLPATRLEMIQ-PLELTEKREVFDVSVNVNGGGLSAQAGAIRLGIARALIESIPELRAILKKSGLLTRDARCVERKKYGLKKARRAPQ 126

[Close]

BLAST of CX286967 vs. ExPASy Swiss-Prot
Match: RS9_STRTD (30S ribosomal protein S9 OS=Streptococcus thermophilus (strain ATCC BAA-491 / LMD-9) GN=rpsI PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.332e-26
Identity = 67/120 (55.83%), Postives = 79/120 (65.83%), Query Frame = 2

Query:  263 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQ 622
            GTGRRK A+ARV L  GTGK  +N +D +EY+    L L  I  P      E SYDV V   GGG +GQ+ AI  G+ARALL+V  D R  LK+ GLLTRD+R+VERKK GL KARKA Q
Sbjct:    8 GTGRRKNAVARVRLVPGTGKITVNKKDLEEYIPHADLRL-VINQPFAVTSTEGSYDVHVNVVGGGYAGQSGAIRHGIARALLQVDPDFRDSLKRAGLLTRDARMVERKKPGLKKARKASQ 126

The following BLAST results are available for this feature:

BLAST of CX286967 vs. ExPASy Swiss-Prot

BLAST of CX286967 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
RS9_STRPN	3.317e-26	56.67	30S ribosomal protein S9 OS=Streptococcus pneumoni...	[more]
RS9_STRPJ	3.317e-26	56.67	30S ribosomal protein S9 OS=Streptococcus pneumoni...	[more]
RS9_STRPI	3.317e-26	56.67	30S ribosomal protein S9 OS=Streptococcus pneumoni...	[more]
RS9_STRP7	3.317e-26	56.67	30S ribosomal protein S9 OS=Streptococcus pneumoni...	[more]
RS9_STRP4	3.317e-26	56.67	30S ribosomal protein S9 OS=Streptococcus pneumoni...	[more]
RS9_STRP2	3.317e-26	56.67	30S ribosomal protein S9 OS=Streptococcus pneumoni...	[more]
RS9_MYCA1	3.317e-26	55.93	30S ribosomal protein S9 OS=Mycobacterium avium (s...	[more]
RS9_CLOD6	3.317e-26	52.89	30S ribosomal protein S9 OS=Clostridium difficile ...	[more]
RS9_AYWBP	3.317e-26	55.37	30S ribosomal protein S9 OS=Aster yellows witches'...	[more]
RS9_STRTD	4.332e-26	55.83	30S ribosomal protein S9 OS=Streptococcus thermoph...	[more]

Pages

Properties


Property Name	Value
Genbank description	C01003B02SK Veg1 Citrus clementina cDNA clone C01003B02, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX286967 ID=CX286967; Name=CX286967; organism=Citrus clementina; type=EST; length=623bp
AATGGCAATGTCACCCGCAATATCTCCTCTCACATCTTCCCTCTCTTCCC
TTTCATTTTCCTCCCAAATTTCTCAGAAACCAGGCATCCCCTTTGTCTCA
TTACACAGGTCCAAATCGATATCCATCTCTCCAAAAAATGATAAAACCCC
AAAACTGGTAGTATCGGCCACAGAAGCTGCGCCAGCTGAACTGGAAACAA
CTGACCTCAAGAAATACGTCAAATCGAGGCTTCCCGGTGGCTTTGCGGCT
CAAACTATTTTTGGAACGGGCCGTCGGAAATGCGCCATTGCTCGTGTCGT
CCTCCAAGAAGGCACCGGCAAATTCATCATCAACTACCGCGATGCCAAGG
AATATCTTCAAGGCAATCCACTATGGCTACAGTATATAAAAGTCCCTTTG
GTAACTTTGGGTTATGAAACTAGCTATGATGTTTTTGTGAAAGCTCATGG
TGGCGGCCTCTCTGGTCAAGCTCAAGCAATAACACTCGGCGTTGCTCGTG
CATTGTTGAAGGTGAGCCAGGACCATAGATCCCCTCTGAAAAAGGAAGGC
CTTCTGACCAGAGATTCCAGAGTAGTAGAGAGGAAAAAAGCTGGACTCCA
TAAAGCCCGGAAAGCCCCACAAT