CX288721
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP267_ARATH (Pentatricopeptide repeat-containing protein At3g47530 OS=Arabidopsis thaliana GN=PCMP-H76 PE=2 SV=1) HSP 1 Score: 150.599 bits (379), Expect = 5.227e-36 Identity = 74/180 (41.11%), Postives = 109/180 (60.56%), Query Frame = 3 Query: 45 SVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTE-EYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAG 581 + L+ +Y++CG++D A VF M + +W ++I+ +G K+++ F+EML I P+ T ++SAC H+G V G+ +F M E+ I + HY C+VDL GRA L+KA I SM PD+ +W TLLGACRVHG+VEL E SHL +L + +G YVLL N ++ G Sbjct: 256 NTLVSMYSRCGSMDKAYQVFYGMRERNVVSWTALISGLAMNGFGKEAIEAFNEMLKFGISPEEQTLTGLLSACSHSGLVAEGMMFFDRMRSGEFKIKPNLHHYGCVVDLLGRARLLDKAYSLIKSMEMKPDSTIWRTLLGACRVHGDVELGERVISHLIELKAEEAGDYVLLLNTYSTVG 435 HSP 2 Score: 73.9442 bits (180), Expect = 6.218e-13 Identity = 51/190 (26.84%), Postives = 90/190 (47.37%), Query Frame = 3 Query: 6 MIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNK---IKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHL--FDLDPQNSGYYVLLS 560 + D SD++ + L+DLY+ C N A VFD + ++ +WN + + Y + +D L LF +M N+ +KPD VT L + AC + G ++ G H +E G+ + +V ++ R G ++KA + M + W L+ ++G + A A + + F + P+ LLS Sbjct: 139 IFSDGFLSDSLLMTTLMDLYSTCENSTDACKVFDEIPKRDTVSWNVLFSCYLRNKRTRDVLVLFDKMKNDVDGCVKPDGVTCLLALQACANLGALDFG-KQVHDFIDENGLSGALNLSNTLVSMYSRCGSMDKAYQVFYGMR-ERNVVSWTALISGLAMNGFGKEAIEAFNEMLKFGISPEEQTLTGLLS 326
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP410_ARATH (Putative pentatricopeptide repeat-containing protein At5g40405 OS=Arabidopsis thaliana GN=PCMP-H14 PE=3 SV=1) HSP 1 Score: 149.828 bits (377), Expect = 8.917e-36 Identity = 74/178 (41.57%), Postives = 108/178 (60.67%), Query Frame = 3 Query: 45 SVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADA 578 + L+DLYAKCG+++ A VF M K W+S + +G + L LF M + + P+ VTF++++ C G V+ G +F M E+GI ++EHY C+VDL+ RAGRL A+ I MP P A VW +LL A R++ N+EL +AS + +L+ N G YVLLSNI+AD+ Sbjct: 279 TTLVDLYAKCGDMEKAMEVFWGMEEKNVYTWSSALNGLAMNGFGEKCLELFSLMKQDGVTPNAVTFVSVLRGCSVVGFVDEGQRHFDSMRNEFGIEPQLEHYGCLVDLYARAGRLEDAVSIIQQMPMKPHAAVWSSLLHASRMYKNLELGVLASKKMLELETANHGAYVLLSNIYADS 456 HSP 2 Score: 77.0258 bits (188), Expect = 7.345e-14 Identity = 41/150 (27.33%), Postives = 76/150 (50.67%), Query Frame = 3 Query: 30 DNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHG 479 D + + ++ A+CG++ FAR +F+ M + AWN+MI+ Y G +++L +FH M +K + V ++++SAC G ++ G + H E I + +VDL+ + G + KA+E M + W + L ++G Sbjct: 173 DFVCRTAMVTACARCGDVVFARKLFEGMPERDPIAWNAMISGYAQVGESREALNVFHLMQLEGVKVNGVAMISVLSACTQLGALDQG-RWAHSYIERNKIKITVRLATTLVDLYAKCGDMEKAMEVFWGME-EKNVYTWSSALNGLAMNG 320
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP192_ARATH (Pentatricopeptide repeat-containing protein At2g37320 OS=Arabidopsis thaliana GN=PCMP-E50 PE=2 SV=1) HSP 1 Score: 149.828 bits (377), Expect = 8.917e-36 Identity = 74/178 (41.57%), Postives = 110/178 (61.80%), Query Frame = 3 Query: 51 LIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEML-NNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAG 581 LI +Y KCG+L A +FD K +WNSMIA Y HG ++ LF M+ + KPD +T+L ++S+C HAG V+ G +F+ M E +G+ + HY+C+VDL GR G L +ALE I +MP P++ +WG+LL +CRVHG+V A+ L+P + +V L+N++A G Sbjct: 262 LISMYCKCGDLKDAFRIFDQFSNKDVVSWNSMIAGYAQHGLAMQAIELFELMMPKSGTKPDAITYLGVLSSCRHAGLVKEGRKFFNLMAE-HGLKPELNHYSCLVDLLGRFGLLQEALELIENMPMKPNSVIWGSLLFSCRVHGDVWTGIRAAEERLMLEPDCAATHVQLANLYASVG 438
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP182_ARATH (Pentatricopeptide repeat-containing protein At2g33760 OS=Arabidopsis thaliana GN=PCMP-H6 PE=2 SV=1) HSP 1 Score: 149.828 bits (377), Expect = 8.917e-36 Identity = 76/183 (41.53%), Postives = 120/183 (65.57%), Query Frame = 3 Query: 45 SVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIK-PDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDA---GVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAG 581 + LI+LY++CG++ AR VFD M AAW +MI+AYG HG+ + ++ LF++M ++ P++VTF+A++SAC HAG VE G + MT+ Y + +EH+ CMVD+ GRAG L++A + I+ + A +W +LGAC++H N +L + L L+P N G++V+LSNI+A +G Sbjct: 247 TALINLYSRCGDVGKAREVFDKMKETNVAAWTAMISAYGTHGYGQQAVELFNKMEDDCGPIPNNVTFVAVLSACAHAGLVEEGRSVYKRMTKSYRLIPGVEHHVCMVDMLGRAGFLDEAYKFIHQLDATGKATAPALWTAMLGACKMHRNYDLGVEIAKRLIALEPDNPGHHVMLSNIYALSG 429 HSP 2 Score: 90.8929 bits (224), Expect = 4.916e-18 Identity = 43/150 (28.67%), Postives = 80/150 (53.33%), Query Frame = 3 Query: 30 DNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHG 479 D ++ L+ Y+KCG+++ AR VFD M K AWNS+++ + +G +++ +F++M + +PD TF++++SAC G V G + H G+ ++ +++L+ R G + KA E + M + W ++ A HG Sbjct: 141 DTYVQAALVTFYSKCGDMEGARQVFDRMPEKSIVAWNSLVSGFEQNGLADEAIQVFYQMRESGFEPDSATFVSLLSACAQTGAVSLG-SWVHQYIISEGLDLNVKLGTALINLYSRCGDVGKAREVFDKMK-ETNVAAWTAMISAYGTHG 288
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP127_ARATH (Putative pentatricopeptide repeat-containing protein At1g77010, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E5 PE=3 SV=1) HSP 1 Score: 149.828 bits (377), Expect = 8.917e-36 Identity = 71/185 (38.38%), Postives = 108/185 (58.38%), Query Frame = 3 Query: 27 SDNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAG 581 SD + S LIDLY KCG ++ R VFD M + E WNSMI+ Y +G +++ LF +M I+P +TF+ +++AC + G VE G F M ++G EH++CMVDL RAG + +A+ + MPF D +W ++L C +G + + A+ + +L+P+NS YV LS I A +G Sbjct: 483 SDQVVSSSLIDLYCKCGFVEHGRRVFDTMVKSDEVPWNSMISGYATNGQGFEAIDLFKKMSVAGIRPTQITFMVVLTACNYCGLVEEGRKLFESMKVDHGFVPDKEHFSCMVDLLARAGYVEEAINLVEEMPFDVDGSMWSSILRGCVANGYKAMGKKAAEKIIELEPENSVAYVQLSAIFATSG 667
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP355_ARATH (Pentatricopeptide repeat-containing protein At4g38010 OS=Arabidopsis thaliana GN=PCMP-E45 PE=2 SV=1) HSP 1 Score: 149.443 bits (376), Expect = 1.165e-35 Identity = 74/178 (41.57%), Postives = 110/178 (61.80%), Query Frame = 3 Query: 45 SVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCM-TEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGN-VELAEVASSHLFDLDPQNSGYYVLLSNIHA 572 + ++D+YAKCG ++ A +F+ + K WN+++ HGH +SL F EM+ KP+ VTFLA ++AC H G V+ G YFH M + EY + ++EHY CM+DL RAG L++ALE + +MP PD + G +L AC+ G +EL + D++ ++SG YVLLSNI A Sbjct: 345 TAIVDMYAKCGYIETALEIFNGIRSKNVFTWNALLGGLAIHGHGLESLRYFEEMVKLGFKPNLVTFLAALNACCHTGLVDEGRRYFHKMKSREYNLFPKLEHYGCMIDLLCRAGLLDEALELVKAMPVKPDVRICGAILSACKNRGTLMELPKEILDSFLDIEFEDSGVYVLLSNIFA 522 HSP 2 Score: 73.559 bits (179), Expect = 8.121e-13 Identity = 46/147 (31.29%), Postives = 73/147 (49.66%), Query Frame = 3 Query: 45 SVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEM-LNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGN 482 + LID+Y KC L A VF + +K + +WNSMI+ K+++ LF M ++ IKPD +++SAC G V+ G + H GI +VD++ + G + ALE N + + + W LLG +HG+ Sbjct: 243 NALIDMYVKCEQLSDAMRVFGELEKKDKVSWNSMISGLVHCERSKEAIDLFSLMQTSSGIKPDGHILTSVLSACASLGAVDHG-RWVHEYILTAGIKWDTHIGTAIVDMYAKCGYIETALEIFNGIR-SKNVFTWNALLGGLAIHGH 387
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP308_ARATH (Pentatricopeptide repeat-containing protein At4g14050, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H13 PE=2 SV=3) HSP 1 Score: 149.443 bits (376), Expect = 1.165e-35 Identity = 73/189 (38.62%), Postives = 112/189 (59.26%), Query Frame = 3 Query: 15 DSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLF-DLDPQNSGYYVLLSNIHADA 578 DSC + LID+YAKC ++ A+ +F M + +W S+I HG + +LAL+ +M+++ +KP+ VTF+ +I AC H G VE G F MT++YGI ++HY C++DL GR+G L++A I++MPF PD W LL AC+ G ++ + HL ++ Y+LLSNI+A A Sbjct: 270 DSCV---FISNALIDMYAKCSDVIAAKDIFSRMRHRDVVSWTSLIVGMAQHGQAEKALALYDDMVSHGVKPNEVTFVGLIYACSHVGFVEKGRELFQSMTKDYGIRPSLQHYTCLLDLLGRSGLLDEAENLIHTMPFPPDEPTWAALLSACKRQGRGQMGIRIADHLVSSFKLKDPSTYILLSNIYASA 455
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP297_ARATH (Pentatricopeptide repeat-containing protein At4g01030, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H65 PE=2 SV=2) HSP 1 Score: 148.288 bits (373), Expect = 2.594e-35 Identity = 69/182 (37.91%), Postives = 111/182 (60.99%), Query Frame = 3 Query: 30 DNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHAD 575 D + L+D+Y K G+L A +F + K A+WN M+ Y G ++ +A F ML ++PD +TF +++S C ++G V+ G YF M YGI +EH +CMVDL GR+G L++A + I +M PDA +WG L +C++H ++ELAE+A L L+P NS Y+++ N++++ Sbjct: 430 DAYVATALVDMYGKSGDLQSAIEIFWGIKNKSLASWNCMLMGYAMFGRGEEGIAAFSVMLEAGMEPDAITFTSVLSVCKNSGLVQEGWKYFDLMRSRYGIIPTIEHCSCMVDLLGRSGYLDEAWDFIQTMSLKPDATIWGAFLSSCKIHRDLELAEIAWKRLQVLEPHNSANYMMMINLYSN 611 HSP 2 Score: 70.4774 bits (171), Expect = 6.875e-12 Identity = 47/146 (32.19%), Postives = 68/146 (46.58%), Query Frame = 3 Query: 30 DNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMP---FAPDAGVWGTLL 458 D E+ LID+Y K G L +AR VFDMM K AWNS+++ LKD+ AL M IKPD +T+ ++ S G+ E + M E+ G+ + + + + G AL+ M P+A TLL Sbjct: 259 DVYVETTLIDMYIKTGYLPYARMVFDMMDAKNIVAWNSLVSGLSYACLLKDAEALMIRMEKEGIKPDAITWNSLASGYATLGKPEKALDVIGKMKEK-GVAPNVVSWTAIFSGCSKNGNFRNALKVFIKMQEEGVGPNAATMSTLL 403
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP244_ARATH (Pentatricopeptide repeat-containing protein At3g20730 OS=Arabidopsis thaliana GN=PCMP-E94 PE=2 SV=1) HSP 1 Score: 148.288 bits (373), Expect = 2.594e-35 Identity = 72/188 (38.30%), Postives = 115/188 (61.17%), Query Frame = 3 Query: 24 RSDNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMP--FAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAG 581 R D + LID+YAK G ++ A F+ M K +W S+IA YG HG+ + ++ L++ M + +IKP+ VTFL+++SAC H GQ E G + M ++GI AR EH +C++D+ R+G L +A I S + + WG L ACR HGNV+L++VA++ L ++P+ Y+ L++++A G Sbjct: 350 RFDVALGNSLIDMYAKSGEIEDAVLAFEEMKEKDVRSWTSLIAGYGRHGNFEKAIDLYNRMEHERIKPNDVTFLSLLSACSHTGQTELGWKIYDTMINKHGIEAREEHLSCIIDMLARSGYLEEAYALIRSKEGIVSLSSSTWGAFLDACRRHGNVQLSKVAATQLLSMEPRKPVNYINLASVYAANG 537
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP370_ARATH (Putative pentatricopeptide repeat-containing protein At5g08490 OS=Arabidopsis thaliana GN=PCMP-E32 PE=3 SV=1) HSP 1 Score: 147.902 bits (372), Expect = 3.388e-35 Identity = 66/177 (37.29%), Postives = 106/177 (59.89%), Query Frame = 3 Query: 42 ESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHA 572 + L+D+YAKCG+L A +VF R+ + +M+A Y HG K++L ++ M + IKPDHV +++AC HAG ++ G+ + + +G+ ME YAC VDL R GRL+ A + MP P+A +WGTLL AC + ++L ++HL + ++G +VL+SN++A Sbjct: 605 KGTLLDVYAKCGSLKHAYSVFQSDARRDLVMFTAMVAGYAVHGRGKEALMIYSHMTESNIKPDHVFITTMLTACCHAGLIQDGLQIYDSIRTVHGMKPTMEQYACAVDLIARGGRLDDAYSFVTQMPVEPNANIWGTLLRACTTYNRMDLGHSVANHLLQAESDDTGNHVLISNMYA 781 The following BLAST results are available for this feature:
BLAST of CX288721 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 200
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX288721 ID=CX288721; Name=CX288721; organism=Citrus clementina; type=EST; length=581bpback to top |