CX288721
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP333_ARATH (Pentatricopeptide repeat-containing protein At4g21300 OS=Arabidopsis thaliana GN=PCMP-E36 PE=2 SV=1) HSP 1 Score: 259.225 bits (661), Expect = 1.044e-68 Identity = 127/192 (66.15%), Postives = 146/192 (76.04%), Query Frame = 3 Query: 6 MIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNK-IKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADA 578 MIK S SD +ES LID+YAKCGNL A VF M K +WNS+IAA G HG LKDSL LFHEM+ I+PD +TFL IIS+C H G V+ G+ +F MTE+YGI + EHYAC+VDLFGRAGRL +A ET+ SMPF PDAGVWGTLLGACR+H NVELAEVASS L DLDP NSGYYVL+SN HA+A Sbjct: 568 MIKHSLASDVYSESTLIDMYAKCGNLKAAMNVFKTMKEKNIVSWNSIIAACGNHGKLKDSLCLFHEMVEKSGIRPDQITFLEIISSCCHVGDVDEGVRFFRSMTEDYGIQPQQEHYACVVDLFGRAGRLTEAYETVKSMPFPPDAGVWGTLLGACRLHKNVELAEVASSKLMDLDPSNSGYYVLISNAHANA 759
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP348_ARATH (Pentatricopeptide repeat-containing protein At4g33990 OS=Arabidopsis thaliana GN=EMB2758 PE=2 SV=2) HSP 1 Score: 204.912 bits (520), Expect = 2.336e-52 Identity = 91/192 (47.40%), Postives = 133/192 (69.27%), Query Frame = 3 Query: 6 MIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAG 581 ++K+ D + L D+Y KCG L+ A ++F + R WN++IA +G HGH + ++ LF EML+ +KPDH+TF+ ++SAC H+G V+ G F M +YGI ++HY CMVD++GRAG+L AL+ I SM PDA +WG LL ACRVHGNV+L ++AS HLF+++P++ GY+VLLSN++A AG Sbjct: 477 LLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAG 668 HSP 2 Score: 70.4774 bits (171), Expect = 6.875e-12 Identity = 44/175 (25.14%), Postives = 88/175 (50.29%), Query Frame = 3 Query: 45 SVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEM-LNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFD--LDPQNSGYYVLLS 560 + ++ +YAK G +D AR VF+ + +WN++I+ Y +G +++ +++ M +I + T+++++ AC AG + G+ H + G+ + + D++G+ GRL AL +P ++ W TL+ HG+ E A + + D + P + + LLS Sbjct: 388 NAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMK-LHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIP-RVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLS 560 HSP 3 Score: 66.6254 bits (161), Expect = 9.927e-11 Identity = 44/160 (27.50%), Postives = 76/160 (47.50%), Query Frame = 3 Query: 51 LIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFH-EMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLD 527 L++LY GN+ AR FD + + AWN MI+ YG G+ + + F ML++ + PD+ TF +++ AC + + HC+ ++G + A ++ L+ R + A + MP D G W ++ GN + A S+ L +D Sbjct: 92 LVNLYCYLGNVALARHTFDHIQNRDVYAWNLMISGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKAC----RTVIDGNKIHCLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMP-VRDMGSWNAMISGYCQSGNAKEALTLSNGLRAMD 246
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PPR53_ARATH (Pentatricopeptide repeat-containing protein At1g20230 OS=Arabidopsis thaliana GN=PCMP-H21 PE=2 SV=2) HSP 1 Score: 199.904 bits (507), Expect = 7.514e-51 Identity = 89/185 (48.11%), Postives = 129/185 (69.73%), Query Frame = 3 Query: 30 DNI-AESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAG 581 DN+ S LID+YAKCG ++ ++ VF+MM K WNS++ + HG K+ +++F ++ ++KPD ++F +++SACG G + G YF M+EEYGI R+EHY+CMV+L GRAG+L +A + I MPF PD+ VWG LL +CR+ NV+LAE+A+ LF L+P+N G YVLLSNI+A G Sbjct: 421 DNVHVGSALIDMYAKCGRINLSQIVFNMMPTKNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNVDLAEIAAEKLFHLEPENPGTYVLLSNIYAAKG 605
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP341_ARATH (Pentatricopeptide repeat-containing protein At4g30700 OS=Arabidopsis thaliana GN=DYW9 PE=2 SV=1) HSP 1 Score: 197.593 bits (501), Expect = 3.729e-50 Identity = 94/193 (48.70%), Postives = 127/193 (65.80%), Query Frame = 3 Query: 9 IKDSCRSDNIAESV-----LIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHA 572 + D RS + S+ LI +YAKCG++ AR +FD+M +K E WN+MI+ YG HG +++L +F+EMLN+ I P VTFL ++ AC HAG V+ G F+ M YG ++HYACMVD+ GRAG L +AL+ I +M P + VW TLLGACR+H + LA S LF+LDP N GY+VLLSNIH+ Sbjct: 442 VHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACMVDILGRAGHLQRALQFIEAMSIEPGSSVWETLLGACRIHKDTNLARTVSEKLFELDPDNVGYHVLLSNIHS 634 HSP 2 Score: 70.8626 bits (172), Expect = 5.264e-12 Identity = 38/157 (24.20%), Postives = 75/157 (47.77%), Query Frame = 3 Query: 9 IKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHG 479 +K + S + L +Y+K ++ AR +FD K +WN+MI+ Y +G +D+++LF EM ++ P+ VT I+SAC G + G + H + + + ++ ++ + G + +A + M + W T++ +HG Sbjct: 346 LKSNFLSHASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSLG-KWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNEV-TWNTMISGYGLHG 500
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP316_ARATH (Pentatricopeptide repeat-containing protein At4g16835, mitochondrial OS=Arabidopsis thaliana GN=DYW10 PE=2 SV=2) HSP 1 Score: 197.593 bits (501), Expect = 3.729e-50 Identity = 95/190 (50.00%), Postives = 130/190 (68.42%), Query Frame = 3 Query: 3 LMIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHA 572 ++ K + +D A + LI +Y KCG L A +F++M +K AWN+MI+ Y HG+ +L LF EM++NKI+PD +TF+A++ AC HAG V G+ YF M +Y + + +HY CMVDL GRAG+L +AL+ I SMPF P A V+GTLLGACRVH NVELAE A+ L L+ QN+ YV L+NI+A Sbjct: 309 IVSKSTLCNDVTALTSLISMYCKCGELGDAWKLFEVMKKKDVVAWNAMISGYAQHGNADKALCLFREMIDNKIRPDWITFVAVLLACNHAGLVNIGMAYFESMVRDYKVEPQPDHYTCMVDLLGRAGKLEEALKLIRSMPFRPHAAVFGTLLGACRVHKNVELAEFAAEKLLQLNSQNAAGYVQLANIYA 498
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PPR32_ARATH (Pentatricopeptide repeat-containing protein At1g11290 OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1) HSP 1 Score: 196.823 bits (499), Expect = 6.361e-50 Identity = 95/192 (49.48%), Postives = 126/192 (65.62%), Query Frame = 3 Query: 6 MIKDSCRSDNI-AESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADA 578 ++ SC N+ + L+D+YAKCG + AR +FDMM + WN+MI YG HG K +L LF EM IKP+ VTFL++ISAC H+G VEAG+ F+ M E Y I M+HY MVDL GRAGRLN+A + I MP P V+G +LGAC++H NV AE A+ LF+L+P + GY+VLL+NI+ A Sbjct: 463 VVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFAEKAAERLFELNPDDGGYHVLLANIYRAA 654 HSP 2 Score: 78.1814 bits (191), Expect = 3.297e-14 Identity = 36/118 (30.51%), Postives = 69/118 (58.47%), Query Frame = 3 Query: 45 SVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKA 398 + L+D+YAKCG+L+ AR +FD M + +WNSMI AY + + K+++ +F +ML+ +KP V+ + + AC G +E G + H ++ E G+ + ++ ++ + ++ A Sbjct: 275 TALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERG-RFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTA 391
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP258_ARATH (Pentatricopeptide repeat-containing protein At3g26782, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H34 PE=2 SV=1) HSP 1 Score: 195.282 bits (495), Expect = 1.851e-49 Identity = 88/192 (45.83%), Postives = 128/192 (66.67%), Query Frame = 3 Query: 6 MIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAG 581 +I+ D I + +ID+Y KCG ++ AR FD M K +W +MIA YG HGH +L LF M+++ ++P+++TF+++++AC HAG G +F+ M +G+ +EHY CMVDL GRAG L KA + I M PD+ +W +LL ACR+H NVELAE++ + LF+LD N GYY+LLS+I+ADAG Sbjct: 313 VIRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQRMKMKPDSIIWSSLLAACRIHKNVELAEISVARLFELDSSNCGYYMLLSHIYADAG 504
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PPR70_ARATH (Pentatricopeptide repeat-containing protein At1g33350 OS=Arabidopsis thaliana GN=PCMP-E57 PE=2 SV=1) HSP 1 Score: 194.897 bits (494), Expect = 2.417e-49 Identity = 86/188 (45.74%), Postives = 127/188 (67.55%), Query Frame = 3 Query: 27 SDNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLN---NKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAG 581 SD + L+DLY KCGNL+ A +VF M +K AWNSMI + HG ++++A+F EM+ N IKPDH+TF+ +++AC H G V G YF MT +GI R+EHY C++DL GRAGR ++ALE +++M D +WG+LL AC++HG+++LAEVA +L L+P N GY +++N++ + G Sbjct: 293 SDVFVSNSLVDLYGKCGNLEEASSVFKMASKKSLTAWNSMINCFALHGRSEEAIAVFEEMMKLNINDIKPDHITFIGLLNACTHGGLVSKGRGYFDLMTNRFGIEPRIEHYGCLIDLLGRAGRFDEALEVMSTMKMKADEAIWGSLLNACKIHGHLDLAEVAVKNLVALNPNNGGYVAMMANLYGEMG 480 HSP 2 Score: 71.2478 bits (173), Expect = 4.030e-12 Identity = 46/183 (25.14%), Postives = 94/183 (51.37%), Query Frame = 3 Query: 36 IAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNN-KIKPDHVTFLAIISACGHAG--QVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELA-----EVASSHLFDLDPQNSGYYVLLS 560 ++ + ++ YA+ G++ A +F+ M + +WN+++AA +G ++++LF M+N I+P+ VT + ++SAC G Q+ GIH F + + + + +VDL+G+ G L +A ++ M W +++ +HG E A E+ ++ D+ P + + LL+ Sbjct: 194 VSWTAMLSGYARSGDISNAVALFEDMPERDVPSWNAILAACTQNGLFLEAVSLFRRMINEPSIRPNEVTVVCVLSACAQTGTLQLAKGIHAFAYRRD---LSSDVFVSNSLVDLYGKCGNLEEA-SSVFKMASKKSLTAWNSMINCFALHGRSEEAIAVFEEMMKLNINDIKPDHITFIGLLN 372
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PPR14_ARATH (Pentatricopeptide repeat-containing protein At1g06140, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E61 PE=2 SV=1) HSP 1 Score: 193.741 bits (491), Expect = 5.385e-49 Identity = 89/192 (46.35%), Postives = 127/192 (66.15%), Query Frame = 3 Query: 6 MIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAG 581 MI++ D + + ID+YA+CGN+ ARTVFDMM + +W+SMI A+G +G +++L FH+M + + P+ VTF++++SAC H+G V+ G F MT +YG+ EHYACMVDL GRAG + +A I++MP P A WG LL ACR+H V+LA + L ++P+ S YVLLSNI+ADAG Sbjct: 338 MIRNGIEMDAVNFTSFIDMYARCGNIQMARTVFDMMPERNVISWSSMINAFGINGLFEEALDCFHKMKSQNVVPNSVTFVSLLSACSHSGNVKEGWKQFESMTRDYGVVPEEEHYACMVDLLGRAGEIGEAKSFIDNMPVKPMASAWGALLSACRIHKEVDLAGEIAEKLLSMEPEKSSVYVLLSNIYADAG 529
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP301_ARATH (Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana GN=PCMP-H24 PE=2 SV=1) HSP 1 Score: 193.356 bits (490), Expect = 7.032e-49 Identity = 89/192 (46.35%), Postives = 124/192 (64.58%), Query Frame = 3 Query: 6 MIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAG 581 ++K + + L+ +Y KCG+++ A +F M K +WN+MIA Y HG + +L F M +KPD T +A++SAC H G V+ G YF+ MT++YG+ +HYACMVDL GRAG L A + +MPF PDA +WGTLLGA RVHGN ELAE A+ +F ++P+NSG YVLLSN++A +G Sbjct: 435 LVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSG 626 The following BLAST results are available for this feature:
BLAST of CX288721 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 200
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX288721 ID=CX288721; Name=CX288721; organism=Citrus clementina; type=EST; length=581bpback to top |