CX288721

Overview
NameCX288721
Unique NameCX288721
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length581
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP441_ARATH (Pentatricopeptide repeat-containing protein At5g61800 OS=Arabidopsis thaliana GN=PCMP-E8 PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.682e-34
Identity = 71/189 (37.57%), Postives = 111/189 (58.73%), Query Frame = 3
Query:   30 DNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAG------VWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADA 578
            D+   + L+D YAKCG +D A  +F++   K    WN+MI     HG+ + ++  F +M+++ IKPD VTF++++  C H+G V+   + F  M   Y +   M+HY CM DL GRAG + +A E I  MP   D G       W  LLG CR+HGN+E+AE A++ +  L P++ G Y ++  ++A+A
Sbjct:  283 DSFLATGLVDFYAKCGFIDTAMEIFELCSDKTLFTWNAMITGLAMHGNGELTVDYFRKMVSSGIKPDGVTFISVLVGCSHSGLVDEARNLFDQMRSLYDVNREMKHYGCMADLLGRAGLIEEAAEMIEQMP--KDGGNREKLLAWSGLLGGCRIHGNIEIAEKAANRVKALSPEDGGVYKVMVEMYANA 469          

HSP 2 Score: 72.0182 bits (175), Expect = 2.363e-12
Identity = 44/162 (27.16%), Postives = 80/162 (49.38%), Query Frame = 3
Query:    6 MIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVEL 491
            +  ++ + D +  +VLID   K   +  AR +FD M  +   +WNS+I+ Y    H ++++ LF EM+   +KPD+V  ++ +SAC  +G  + G    H  T+   +         +VD + + G ++ A+E I  +        W  ++    +HGN EL
Sbjct:  174 LFDENPQRDVVTYNVLIDGLVKAREIVRARELFDSMPLRDLVSWNSLISGYAQMNHCREAIKLFDEMVALGLKPDNVAIVSTLSACAQSGDWQKG-KAIHDYTKRKRLFIDSFLATGLVDFYAKCGFIDTAME-IFELCSDKTLFTWNAMITGLAMHGNGEL 333          
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP200_ARATH (Pentatricopeptide repeat-containing protein At2g42920, chloroplastic OS=Arabidopsis thaliana GN=PCMP-E75 PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.196e-34
Identity = 72/192 (37.50%), Postives = 115/192 (59.90%), Query Frame = 3
Query:    6 MIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAG 581
            ++++    ++I  + LID+Y KCG ++    VF+   +KQ + WNSMI     +G  + ++ LF E+  + ++PD V+F+ +++AC H+G+V     +F  M E+Y I   ++HY  MV++ G AG L +A   I +MP   D  +W +LL ACR  GNVE+A+ A+  L  LDP  +  YVLLSN +A  G
Sbjct:  284 IVRNRFELNSIVVTALIDMYCKCGCIEEGLNVFECAPKKQLSCWNSMILGLANNGFEERAMDLFSELERSGLEPDSVSFIGVLTACAHSGEVHRADEFFRLMKEKYMIEPSIKHYTLMVNVLGGAGLLEEAEALIKNMPVEEDTVIWSSLLSACRKIGNVEMAKRAAKCLKKLDPDETCGYVLLSNAYASYG 475          

HSP 2 Score: 77.411 bits (189), Expect = 5.624e-14
Identity = 51/183 (27.87%), Postives = 91/183 (49.73%), Query Frame = 3
Query:   30 DNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARME----HYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHL--FDLDPQNSGYYVLLS 560
            D +A + +I  +AKCG +D A+ +FD M ++   +WNSMI+ +  +G  KD+L +F EM    +KPD  T +++++AC + G  E G  + H    EY +  R E        ++D++ + G + + L      P       W +++     +G  E A    S L    L+P +  +  +L+
Sbjct:  191 DVVAWNSMIMGFAKCGLIDQAQNLFDEMPQRNGVSWNSMISGFVRNGRFKDALDMFREMQEKDVKPDGFTMVSLLNACAYLGASEQG-RWIH----EYIVRNRFELNSIVVTALIDMYCKCGCIEEGLNVFECAP-KKQLSCWNSMILGLANNGFEERAMDLFSELERSGLEPDSVSFIGVLT 367          
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PPR85_ARATH (Pentatricopeptide repeat-containing protein At1g59720, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H51 PE=2 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 3.746e-34
Identity = 73/193 (37.82%), Postives = 114/193 (59.07%), Query Frame = 3
Query:   30 DNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNK--IKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHG-NVELAEVASSHLFDLDPQN-------SGYYVLLSNIHADA 578
            D + ++ LI++Y KCG+L  A  VF  M ++  A+WN+MI  +  HG  ++++  F  M++ +  ++P+ VTF+ ++ AC H G V  G  YF  M  +Y I   +EHY C+VDL  RAG + +A++ + SMP  PDA +W +LL AC   G +VEL+E  + ++      N       SG YVLLS ++A A
Sbjct:  288 DVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLIARAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIARNIIGTKEDNESSNGNCSGAYVLLSRVYASA 480          

HSP 2 Score: 72.7886 bits (177), Expect = 1.385e-12
Identity = 47/165 (28.48%), Postives = 71/165 (43.03%), Query Frame = 3
Query:    6 MIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYA--CMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELA 494
            ++K     D    + LI LY  CG LD AR VFD M  +   +WNSMI A    G    +L LF EM     +PD  T  +++SAC   G +  G      +  +  +   M+      +++++ + G L  A +    M    D   W  ++     HG  E A
Sbjct:  177 IVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFGEYDSALQLFREM-QRSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQ-KRDLASWNAMILGFATHGRAEEA 339          
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP260_ARATH (Pentatricopeptide repeat-containing protein At3g28660 OS=Arabidopsis thaliana GN=PCMP-E80 PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 3.746e-34
Identity = 76/186 (40.86%), Postives = 105/186 (56.45%), Query Frame = 3
Query:   27 SDNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEM-LNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQN----SGYYVLLSNIH 569
            SD    + L+D+YAKCG ++ A  VF+ + R+   +W ++I  Y  +G+ K +      +   + IKPD V  L +++AC H G +E G      M   YGI  + EHY+C+VDL  RAGRL+ AL+ I  MP  P A VWG LL  CR H NVEL E+A  +L DL+  N        V LSNI+
Sbjct:  252 SDVFVGTALVDMYAKCGCIETAVEVFEKLTRRNVFSWAALIGGYAAYGYAKKATTCLDRIEREDGIKPDSVVLLGVLAACAHGGFLEEGRTMLENMEARYGITPKHEHYSCIVDLMCRAGRLDDALDLIEKMPMKPLASVWGALLNGCRTHKNVELGELAVQNLLDLEKGNVEEEEAALVQLSNIY 437          
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP219_ARATH (Putative pentatricopeptide repeat-containing protein At3g08820 OS=Arabidopsis thaliana GN=PCMP-H84 PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 4.893e-34
Identity = 74/179 (41.34%), Postives = 104/179 (58.10%), Query Frame = 3
Query:   45 SVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAG 581
            + LID+YAKCG +     VF  M  K     N+ I+    +GH+K S A+F +     I PD  TFL ++  C HAG ++ G+ +F+ ++  Y +   +EHY CMVDL+GRAG L+ A   I  MP  P+A VWG LL  CR+  + +LAE     L  L+P N+G YV LSNI++  G
Sbjct:  352 NALIDMYAKCGAMARGFEVFKEMKEKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAGLIQDGLRFFNAISCVYALKRTVEHYGCMVDLWGRAGMLDDAYRLICDMPMRPNAIVWGALLSGCRLVKDTQLAETVLKELIALEPWNAGNYVQLSNIYSVGG 530          

HSP 2 Score: 80.4925 bits (197), Expect = 6.644e-15
Identity = 45/186 (24.19%), Postives = 88/186 (47.31%), Query Frame = 3
Query:   24 RSDNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVEL--AEVASSHLFDLDPQNSGYYVLLSN-IHA 572
            + ++   + L++LYAKCG ++ AR+VFD M  K    W++MI  Y  +   K+ + LF +ML   +KPD  + +  +S+C   G ++ G  +   + + +     +     ++D++ + G + +  E    M    D  +    +     +G+V+L  A    +    + P  S +  LL   +HA
Sbjct:  244 QKNSFVRTTLVNLYAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQENLKPDQFSIVGFLSSCASLGALDLG-EWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFKEMK-EKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVHA 427          

HSP 3 Score: 70.0922 bits (170), Expect = 8.979e-12
Identity = 39/152 (25.66%), Postives = 75/152 (49.34%), Query Frame = 3
Query:    3 LMIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLL 458
            L++K     D  A + L+ +Y+  G L+ A  +FD +  +    W ++ + Y   G  ++++ LF +M+   +KPD    + ++SAC H G +++G      M EE  +         +V+L+ + G++ KA    +SM    D   W T++
Sbjct:  136 LVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHREAIDLFKKMVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYM-EEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSM-VEKDIVTWSTMI 285          
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP184_ARATH (Pentatricopeptide repeat-containing protein At2g34400 OS=Arabidopsis thaliana GN=PCMP-E23 PE=2 SV=2)

HSP 1 Score: 144.05 bits (362), Expect = 4.893e-34
Identity = 72/176 (40.91%), Postives = 106/176 (60.23%), Query Frame = 3
Query:   51 LIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDL-DPQNSGYYVLLSNIHAD 575
            L+D+Y KCG ++ A  VF+ M  K EA WN+MI AY   GH K++L LF  M    + P  +TF+ ++SAC HAG V  G  YFH M+  +G+  ++EHY  ++DL  RAG L++A E +   P  PD  +   +LGAC    +V + E A   L ++ + +N+G YV+ SN+ AD
Sbjct:  375 LVDMYGKCGRVEEALRVFEAMPVKNEATWNAMITAYAHQGHAKEALLLFDRM---SVPPSDITFIGVLSACVHAGLVHQGCRYFHEMSSMFGLVPKIEHYTNIIDLLSRAGMLDEAWEFMERFPGKPDEIMLAAILGACHKRKDVAIREKAMRMLMEMKEAKNAGNYVISSNVLAD 547          

HSP 2 Score: 93.2041 bits (230), Expect = 9.904e-19
Identity = 50/150 (33.33%), Postives = 76/150 (50.67%), Query Frame = 3
Query:   45 SVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELA 494
            S LI +Y KCG+LD AR VF+ M +K   AW +MI  Y  +G   ++  LF EM    + PD  T   ++SACG  G +E G         E  +   +     +VD++G+ GR+ +AL    +MP   +A  W  ++ A    G+ + A
Sbjct:  272 SKLISMYGKCGDLDSARRVFNQMIKKDRVAWTAMITVYSQNGKSSEAFKLFFEMEKTGVSPDAGTLSTVLSACGSVGALELG-KQIETHASELSLQHNIYVATGLVDMYGKCGRVEEALRVFEAMPVKNEA-TWNAMITAYAHQGHAKEA 419          

HSP 3 Score: 87.4261 bits (215), Expect = 5.435e-17
Identity = 54/200 (27.00%), Postives = 93/200 (46.50%), Query Frame = 3
Query:   51 LIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAG-IHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSM----------------------------------PFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGY 545
            LI +YAKCG + +AR +FD +  +   +WNSMI+ Y   G+ KD++ LF +M     +PD  T ++++ AC H G +  G +     +T++ G+   +   + ++ ++G+ G L+ A    N M                                    +PDAG   T+L AC   G +EL +   +H  +L  Q++ Y
Sbjct:  173 LIMMYAKCGQVGYARKLFDEITERDTVSWNSMISGYSEAGYAKDAMDLFRKMEEEGFEPDERTLVSMLGACSHLGDLRTGRLLEEMAITKKIGLSTFLG--SKLISMYGKCGDLDSARRVFNQMIKKDRVAWTAMITVYSQNGKSSEAFKLFFEMEKTGVSPDAGTLSTVLSACGSVGALELGKQIETHASELSLQHNIY 370          
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP337_ARATH (Pentatricopeptide repeat-containing protein At4g25270, chloroplastic OS=Arabidopsis thaliana GN=PCMP-E53 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 6.390e-34
Identity = 74/179 (41.34%), Postives = 106/179 (59.22%), Query Frame = 3
Query:   45 SVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETI-NSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADA 578
            + LI LY+K G L  A  +FD M  +   +WN++I+A   H    + L  F +M     KPD +TF++++S C + G VE G   F  M++EYGI  +MEHYACMV+L+GRAG + +A   I   M       VWG LL AC +HGN ++ EVA+  LF+L+P N   + LL  I++ A
Sbjct:  332 NALIVLYSKRGQLGQACFIFDQMLERDTVSWNAIISA---HSKNSNGLKYFEQMHRANAKPDGITFVSVLSLCANTGMVEDGERLFSLMSKEYGIDPKMEHYACMVNLYGRAGMMEEAYSMIVQEMGLEAGPTVWGALLYACYLHGNTDIGEVAAQRLFELEPDNEHNFELLIRIYSKA 507          

HSP 2 Score: 78.1814 bits (191), Expect = 3.297e-14
Identity = 46/147 (31.29%), Postives = 75/147 (51.02%), Query Frame = 3
Query:   45 SVLIDLYAKCGNLDFARTVFDMMXRKQEA--AWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHG 479
            S L+ LYA CG  + A  VFD M ++  +  AWNS+I+ Y   G  +D++AL+ +M  + +KPD  TF  ++ ACG  G V+ G      + +E G    +     +V ++ + G + KA    + +P   D   W ++L     HG
Sbjct:  131 SKLVRLYASCGYAEVAHEVFDRMSKRDSSPFAWNSLISGYAELGQYEDAMALYFQMAEDGVKPDRFTFPRVLKACGGIGSVQIGEAIHRDLVKE-GFGYDVYVLNALVVMYAKCGDIVKARNVFDMIPH-KDYVSWNSMLTGYLHHG 275          

HSP 3 Score: 70.0922 bits (170), Expect = 8.979e-12
Identity = 46/162 (28.40%), Postives = 78/162 (48.15%), Query Frame = 3
Query:    6 MIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHV---TFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGN 482
            ++K+    D    + L+ +YAKCG++  AR VFDM+  K   +WNSM+  Y  HG L ++L +F  M+ N I+PD V   + LA + +  H  Q+       H      G+   +     ++ L+ + G+L +A    + M    D   W  ++ A   + N
Sbjct:  221 LVKEGFGYDVYVLNALVVMYAKCGDIVKARNVFDMIPHKDYVSWNSMLTGYLHHGLLHEALDIFRLMVQNGIEPDKVAISSVLARVLSFKHGRQL-------HGWVIRRGMEWELSVANALIVLYSKRGQLGQACFIFDQM-LERDTVSWNAIISAHSKNSN 374          
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP419_ARATH (Pentatricopeptide repeat-containing protein At5g46460, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H49 PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.090e-33
Identity = 73/192 (38.02%), Postives = 114/192 (59.38%), Query Frame = 3
Query:    9 IKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYG-IPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAG 581
            +K    +D    + L+ +Y+  GN++ A +VF  + +K   +WNS+I     HG  K +  +F +M+    +PD +TF  ++SAC H G +E G   F+ M+     I  +++HY CMVD+ GR G+L +A E I  M   P+  VW  LL ACR+H +V+  E A++ +F+LD ++S  YVLLSNI+A AG
Sbjct:  353 VKLGLETDAFVGNSLVVMYSDSGNVNDAVSVFIKIFKKSIVSWNSIIVGCAQHGRGKWAFVIFGQMIRLNKEPDEITFTGLLSACSHCGFLEKGRKLFYYMSSGINHIDRKIQHYTCMVDILGRCGKLKEAEELIERMVVKPNEMVWLALLSACRMHSDVDRGEKAAAAIFNLDSKSSAAYVLLSNIYASAG 544          

HSP 2 Score: 68.1662 bits (165), Expect = 3.412e-11
Identity = 43/177 (24.29%), Postives = 82/177 (46.33%), Query Frame = 3
Query:    3 LMIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQ 533
            L+IK     +    + LI  YA C  +  +R VFD    +Q A W ++++ Y  +   +D+L++F  ML N I P+  TF + +++C   G ++ G    H +  + G+         +V ++  +G +N A+     + F      W +++  C  HG  + A V    +  L+ +
Sbjct:  250 LIIKLGFLYEEYVSASLITFYANCKRIGDSRKVFDEKVHEQVAVWTALLSGYSLNKKHEDALSIFSGMLRNSILPNQSTFASGLNSCSALGTLDWG-KEMHGVAVKLGLETDAFVGNSLVVMYSDSGNVNDAVSVFIKI-FKKSIVSWNSIIVGCAQHGRGKWAFVIFGQMIRLNKE 424          
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP181_ARATH (Pentatricopeptide repeat-containing protein At2g33680 OS=Arabidopsis thaliana GN=PCMP-E19 PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.424e-33
Identity = 75/179 (41.90%), Postives = 102/179 (56.98%), Query Frame = 3
Query:   45 SVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAG 581
            S L  +Y+KCG+L+    VF     K   +WN+MI+    +G   ++L LF EML   ++PD VTF+ IISAC H G VE G  YF+ M+++ G+  +++HYACMVDL  RAG+L +A E I S        +W  LL AC+ HG  EL   A   L  L  + S  YV LS I+   G
Sbjct:  462 SALSTMYSKCGSLEDGNLVFRRTPNKDVVSWNAMISGLSHNGQGDEALELFEEMLAEGMEPDDVTFVNIISACSHKGFVERGWFYFNMMSDQIGLDPKVDHYACMVDLLSRAGQLKEAKEFIESANIDHGLCLWRILLSACKNHGKCELGVYAGEKLMALGSRESSTYVQLSGIYTALG 640          
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP259_ARATH (Putative pentatricopeptide repeat-containing protein At3g28640 OS=Arabidopsis thaliana GN=PCMP-E79 PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 1.859e-33
Identity = 76/191 (39.79%), Postives = 104/191 (54.45%), Query Frame = 3
Query:   12 KDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEM-LNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQN----SGYYVLLSNIH 569
            K    SD    + L+D+YAKCG ++ A  VF  + R+   +W ++I  Y  +G+ K ++     +   + IKPD V  L +++AC H G +E G      M   Y I  + EHY+C+VDL  RAGRL+ AL  I  MP  P A VWG LL  CR H NVEL E+A  +L DL+  N        V LSNI+
Sbjct:  247 KSWIESDVFVGTALVDMYAKCGCIETAVEVFKKLTRRNVFSWAALIGGYAAYGYAKKAMTCLERLEREDGIKPDSVVLLGVLAACAHGGFLEEGRSMLENMEARYEITPKHEHYSCIVDLMCRAGRLDDALNLIEKMPMKPLASVWGALLNGCRTHKNVELGELAVKNLLDLEKGNVEEEEAALVQLSNIY 437          
The following BLAST results are available for this feature:
BLAST of CX288721 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 200
Match NameE-valueIdentityDescription
PP441_ARATH1.682e-3437.57Pentatricopeptide repeat-containing protein At5g61... [more]
PP200_ARATH2.196e-3437.50Pentatricopeptide repeat-containing protein At2g42... [more]
PPR85_ARATH3.746e-3437.82Pentatricopeptide repeat-containing protein At1g59... [more]
PP260_ARATH3.746e-3440.86Pentatricopeptide repeat-containing protein At3g28... [more]
PP219_ARATH4.893e-3441.34Putative pentatricopeptide repeat-containing prote... [more]
PP184_ARATH4.893e-3440.91Pentatricopeptide repeat-containing protein At2g34... [more]
PP337_ARATH6.390e-3441.34Pentatricopeptide repeat-containing protein At4g25... [more]
PP419_ARATH1.090e-3338.02Pentatricopeptide repeat-containing protein At5g46... [more]
PP181_ARATH1.424e-3341.90Pentatricopeptide repeat-containing protein At2g33... [more]
PP259_ARATH1.859e-3339.79Putative pentatricopeptide repeat-containing prote... [more]

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Properties
Property NameValue
Genbank descriptionC02003F06SK IF1 Citrus clementina cDNA clone C02003F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288721 ID=CX288721; Name=CX288721; organism=Citrus clementina; type=EST; length=581bp
GTTTGATGATAAAAGATTCCTGCCGCTCTGATAATATTGCTGAGAGTGTA
CTGATAGACTTGTATGCTAAATGTGGAAACTTGGATTTTGCTCGTACTGT
TTTTGACATGATGCANAGGAAGCAGGAAGCTGCATGGAATAGCATGATTG
CTGCTTATGGATGCCACGGCCATCTNAAGGACTCTCTTGCTCTTTTCCAT
GAAATGTTAAATAATAAAATCAAGCCAGATCATGTCACGTTTCTCGCTAT
AATATCTGCTTGTGGCCATGCTGGCCAAGTTGAAGCTGGAATTCATTACT
TCCATTGTATGACTGAAGAATATGGAATCCCAGCTCGCATGGAGCACTAT
GCATGCATGGTAGATTTGTTTGGGCGTGCTGGTCGTTTGAATAAGGCATT
AGAGACCATAAACAGTATGCCATTTGCACCTGATGCAGGTGTCTGGGGAA
CGTTGCTGGGAGCATGTCGGGTCCATGGCAATGTTGAGCTAGCTGAAGTG
GCTTCAAGTCATCTGTTTGATTTAGACCCACAAAACTCAGGCTACTATGT
GCTGCTTTCAAATATACATGCTGATGCTGGA
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