CX288721

Overview
NameCX288721
Unique NameCX288721
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length581
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP256_ARATH (Pentatricopeptide repeat-containing protein At3g26540 OS=Arabidopsis thaliana GN=PCMP-A5 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 7.830e-24
Identity = 58/172 (33.72%), Postives = 92/172 (53.49%), Query Frame = 3
Query:    6 MIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFD 521
            +I+D  + D +    ++D+Y+KC   D+A  VF     +    WNS+I     +G  K+   LF  + N  +KPDHVTFL I+ AC   G VE G  YF  M+ +Y I  ++EHY CM++L+ + G L++  E +  MPF P   +   +  AC+ +   +L   A+  L +
Sbjct:  522 LIRDGYKIDVVIRGAMVDMYSKCRCFDYAIEVFKEAATRDLILWNSIIRGCCRNGRSKEVFELFMLLENEGVKPDHVTFLGILQACIREGHVELGFQYFSSMSTKYHISPQVEHYDCMIELYCKYGCLHQLEEFLLLMPFDPPMQMLTRINDACQRYRWSKLGAWAAKRLMN 693          
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP363_ARATH (Pentatricopeptide repeat-containing protein At5g03800 OS=Arabidopsis thaliana GN=EMB175 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.336e-23
Identity = 63/187 (33.69%), Postives = 98/187 (52.41%), Query Frame = 3
Query:   27 SDNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGH--AGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAG 581
            SD    + LI +YAKC + D A  +F+ M      +WNS+I+ Y    +  ++LAL+  M   +IKPD +T   +ISA  +  + ++ +    F  M   Y I    EHY   V + G  G L +A +TINSMP  P+  V   LL +CR+H N  +A+  +  +    P+    Y+L SNI++ +G
Sbjct:  554 SDISLGNSLISMYAKCCDSDDAIKIFNTMREHDVISWNSLISCYILQRNGDEALALWSRMNEKEIKPDIITLTLVISAFRYTESNKLSSCRDLFLSMKTIYDIEPTTEHYTAFVRVLGHWGLLEEAEDTINSMPVQPEVSVLRALLDSCRIHSNTSVAKRVAKLILSTKPETPSEYILKSNIYSASG 740          
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP346_ARATH (Pentatricopeptide repeat-containing protein At4g32450, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H63 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 8.102e-21
Identity = 55/167 (32.93%), Postives = 87/167 (52.10%), Query Frame = 3
Query:   27 SDNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLD 527
            SD  A + +I++Y+ CG+++ A TVF+ M  +    W  +I  +  +G  +D++  F        KPD   F  I  ACG  G +  G+ +F  M +EYGI   MEHY  +V +    G L++AL  + SM   P+  +W TL+   RVHG++ L +     +  LD
Sbjct:  214 SDISAYNSIIEMYSGCGSVEDALTVFNSMPERNLETWCGVIRCFAKNGQGEDAIDTFSRFKQEGNKPDGEMFKEIFFACGVLGDMNEGLLHFESMYKEYGIIPCMEHYVSLVKMLAEPGYLDEALRFVESM--EPNVDLWETLMNLSRVHGDLILGDRCQDMVEQLD 378          
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PPR63_ARATH (Pentatricopeptide repeat-containing protein At1g29710, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H67 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 7.584e-19
Identity = 51/163 (31.29%), Postives = 81/163 (49.69%), Query Frame = 3
Query:   39 AESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLD 527
            A + +I++Y+ C ++D A  VF+ M          M+  +  +G+ ++++ LF        KP+   F  + S C   G V+ G   F  M  EYGI   MEHY  +  +   +G L++AL  +  MP  P   VW TL+   RVHG+VEL +  +  +  LD
Sbjct:  156 ARNAIIEMYSGCCSVDDALKVFEEMPEWNSGTLCVMMRCFVNNGYGEEAIDLFTRFKEEGNKPNGEIFNQVFSTCTLTGDVKEGSLQFQAMYREYGIVPSMEHYHSVTKMLATSGHLDEALNFVERMPMEPSVDVWETLMNLSRVHGDVELGDRCAELVEKLD 318          
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP183_ARATH (Pentatricopeptide repeat-containing protein At2g34370, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H25 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.206e-18
Identity = 45/159 (28.30%), Postives = 80/159 (50.31%), Query Frame = 3
Query:   51 LIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLD 527
            +I++Y+ C + D A  VF+ M ++    W +MI     +G  + ++ +F   +    KPD   F A+  AC   G +  G+ +F  M  +YG+   ME Y  ++++    G L++AL+ +  M   P   +W TL+  C V G +EL +  +  +  LD
Sbjct:  149 VIEMYSGCRSTDDALNVFNEMPKRNSETWGTMIRCLAKNGEGERAIDMFTRFIEEGNKPDKEIFKAVFFACVSIGDINEGLLHFESMYRDYGMVLSMEDYVNVIEMLAACGHLDEALDFVERMTVEPSVEMWETLMNLCWVQGYLELGDRFAELIKKLD 307          
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP115_ARATH (Pentatricopeptide repeat-containing protein At1g71460, chloroplastic OS=Arabidopsis thaliana GN=PCMP-A3 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.868e-17
Identity = 41/131 (31.30%), Postives = 70/131 (53.44%), Query Frame = 3
Query:    6 MIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKA 398
            ++K    S     + +I +Y KCG+L  A   FD +  K    W ++I AYGC+   +D++  F +M++    P+  TF A++S C  AG V+    +F+ M   Y +    EHY+ +++L  R GR+ +A
Sbjct:  545 ILKKEFESIPFVSARIIKMYGKCGDLRSANFSFDAVAVKGSLTWTAIIEAYGCNELFRDAINCFEQMVSRGFTPNTFTFTAVLSICSQAGFVDEAYRFFNLMLRMYNLQPSEEHYSLVIELLNRCGRVEEA 675          
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP319_ARATH (Pentatricopeptide repeat-containing protein At4g18520 OS=Arabidopsis thaliana GN=PCMP-A2 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 8.121e-13
Identity = 42/160 (26.25%), Postives = 78/160 (48.75%), Query Frame = 3
Query:    3 LMIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGN 482
            L++K   ++D    + L+D+YAKCG +   R VFD M  +    W S+IAA+   G  +++++LF  M    +  +++T ++I+ ACG  G +  G    H    +  I   +   + +V L+ + G    A   +  +P + D   W  ++  C   G+
Sbjct:  309 LVVKRMIKTDVFVGTSLMDMYAKCGEISDCRKVFDGMSNRNTVTWTSIIAAHAREGFGEEAISLFRIMKRRHLIANNLTVVSILRACGSVGALLLG-KELHAQIIKNSIEKNVYIGSTLVWLYCKCGESRDAFNVLQQLP-SRDVVSWTAMISGCSSLGH 466          
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PPR43_ARATH (Pentatricopeptide repeat-containing protein At1g14470 OS=Arabidopsis thaliana GN=PCMP-A4 PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 6.875e-12
Identity = 42/150 (28.00%), Postives = 75/150 (50.00%), Query Frame = 3
Query:   45 SVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLN-NKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTE---EYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGN 482
            + +I  Y + G++  AR +FD M ++   +WNS+IA Y  +G    ++  F +M++    KPD VT ++++SACGH   +E G     C+ +   +  I      Y  ++ ++ R G L +A    + M    D   + TL  A   +G+
Sbjct:  335 NAMISGYTRIGDMSSARQLFDTMPKRNVVSWNSLIAGYAHNGQAALAIEFFEDMIDYGDSKPDEVTMISVLSACGHMADLELG----DCIVDYIRKNQIKLNDSGYRSLIFMYARGGNLWEAKRVFDEMK-ERDVVSYNTLFTAFAANGD 479          
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PPR9_ARATH (Pentatricopeptide repeat-containing protein At1g03560, mitochondrial OS=Arabidopsis thaliana GN=At1g03560 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.612e-11
Identity = 46/159 (28.93%), Postives = 79/159 (49.69%), Query Frame = 3
Query:   39 AESVLIDLYAKCGNLDFARTVFDMMXRKQE----AAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKA---LETINSMPFAPDAGVWGTLLGACRVHGNVELA 494
            A S++I    K G L+   TVF+ M RK      A +  +I  Y   G ++D++ L H M++   KPD VT+  +++     G+VE  + YFH    + G+      Y+ ++D  G+AGR+++A    E ++      D+  +  L+ A   H  V+ A
Sbjct:  329 AFSLVIGGLCKEGKLNEGYTVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFHTCRFD-GLAINSMFYSSLIDGLGKAGRVDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHRKVDEA 486          
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP124_ARATH (Pentatricopeptide repeat-containing protein At1g74850, chloroplastic OS=Arabidopsis thaliana GN=PTAC2 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.612e-11
Identity = 51/174 (29.31%), Postives = 81/174 (46.55%), Query Frame = 3
Query:   21 CRSDNIAESVLIDLYAKCGNLDFARTVFDMMXRKQE----AAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFA---PDAGVWGTLLGACRVHGNVELAEVASSHLFD 521
            C  +    SVL++L+ + G  D  R +F  M         A +N +I  +G  G+ K+ + LFH+M+   I+PD  T+  II ACG  G  E        MT    +P+  + Y  +++ FG+A    +AL   N+M      P    + +LL +    G V+ +E   S L D
Sbjct:  348 CTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHEDARKILQYMTANDIVPS-SKAYTGVIEAFGQAALYEEALVAFNTMHEVGSNPSIETFHSLLYSFARGGLVKESEAILSRLVD 520          
The following BLAST results are available for this feature:
BLAST of CX288721 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 200
Match NameE-valueIdentityDescription
PP256_ARATH7.830e-2433.72Pentatricopeptide repeat-containing protein At3g26... [more]
PP363_ARATH1.336e-2333.69Pentatricopeptide repeat-containing protein At5g03... [more]
PP346_ARATH8.102e-2132.93Pentatricopeptide repeat-containing protein At4g32... [more]
PPR63_ARATH7.584e-1931.29Pentatricopeptide repeat-containing protein At1g29... [more]
PP183_ARATH2.206e-1828.30Pentatricopeptide repeat-containing protein At2g34... [more]
PP115_ARATH1.868e-1731.30Pentatricopeptide repeat-containing protein At1g71... [more]
PP319_ARATH8.121e-1326.25Pentatricopeptide repeat-containing protein At4g18... [more]
PPR43_ARATH6.875e-1228.00Pentatricopeptide repeat-containing protein At1g14... [more]
PPR9_ARATH2.612e-1128.93Pentatricopeptide repeat-containing protein At1g03... [more]
PP124_ARATH2.612e-1129.31Pentatricopeptide repeat-containing protein At1g74... [more]

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Properties
Property NameValue
Genbank descriptionC02003F06SK IF1 Citrus clementina cDNA clone C02003F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288721 ID=CX288721; Name=CX288721; organism=Citrus clementina; type=EST; length=581bp
GTTTGATGATAAAAGATTCCTGCCGCTCTGATAATATTGCTGAGAGTGTA
CTGATAGACTTGTATGCTAAATGTGGAAACTTGGATTTTGCTCGTACTGT
TTTTGACATGATGCANAGGAAGCAGGAAGCTGCATGGAATAGCATGATTG
CTGCTTATGGATGCCACGGCCATCTNAAGGACTCTCTTGCTCTTTTCCAT
GAAATGTTAAATAATAAAATCAAGCCAGATCATGTCACGTTTCTCGCTAT
AATATCTGCTTGTGGCCATGCTGGCCAAGTTGAAGCTGGAATTCATTACT
TCCATTGTATGACTGAAGAATATGGAATCCCAGCTCGCATGGAGCACTAT
GCATGCATGGTAGATTTGTTTGGGCGTGCTGGTCGTTTGAATAAGGCATT
AGAGACCATAAACAGTATGCCATTTGCACCTGATGCAGGTGTCTGGGGAA
CGTTGCTGGGAGCATGTCGGGTCCATGGCAATGTTGAGCTAGCTGAAGTG
GCTTCAAGTCATCTGTTTGATTTAGACCCACAAAACTCAGGCTACTATGT
GCTGCTTTCAAATATACATGCTGATGCTGGA
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