CX288721
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP256_ARATH (Pentatricopeptide repeat-containing protein At3g26540 OS=Arabidopsis thaliana GN=PCMP-A5 PE=2 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 7.830e-24 Identity = 58/172 (33.72%), Postives = 92/172 (53.49%), Query Frame = 3 Query: 6 MIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFD 521 +I+D + D + ++D+Y+KC D+A VF + WNS+I +G K+ LF + N +KPDHVTFL I+ AC G VE G YF M+ +Y I ++EHY CM++L+ + G L++ E + MPF P + + AC+ + +L A+ L + Sbjct: 522 LIRDGYKIDVVIRGAMVDMYSKCRCFDYAIEVFKEAATRDLILWNSIIRGCCRNGRSKEVFELFMLLENEGVKPDHVTFLGILQACIREGHVELGFQYFSSMSTKYHISPQVEHYDCMIELYCKYGCLHQLEEFLLLMPFDPPMQMLTRINDACQRYRWSKLGAWAAKRLMN 693
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP363_ARATH (Pentatricopeptide repeat-containing protein At5g03800 OS=Arabidopsis thaliana GN=EMB175 PE=2 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 1.336e-23 Identity = 63/187 (33.69%), Postives = 98/187 (52.41%), Query Frame = 3 Query: 27 SDNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGH--AGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAG 581 SD + LI +YAKC + D A +F+ M +WNS+I+ Y + ++LAL+ M +IKPD +T +ISA + + ++ + F M Y I EHY V + G G L +A +TINSMP P+ V LL +CR+H N +A+ + + P+ Y+L SNI++ +G Sbjct: 554 SDISLGNSLISMYAKCCDSDDAIKIFNTMREHDVISWNSLISCYILQRNGDEALALWSRMNEKEIKPDIITLTLVISAFRYTESNKLSSCRDLFLSMKTIYDIEPTTEHYTAFVRVLGHWGLLEEAEDTINSMPVQPEVSVLRALLDSCRIHSNTSVAKRVAKLILSTKPETPSEYILKSNIYSASG 740
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP346_ARATH (Pentatricopeptide repeat-containing protein At4g32450, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H63 PE=2 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 8.102e-21 Identity = 55/167 (32.93%), Postives = 87/167 (52.10%), Query Frame = 3 Query: 27 SDNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLD 527 SD A + +I++Y+ CG+++ A TVF+ M + W +I + +G +D++ F KPD F I ACG G + G+ +F M +EYGI MEHY +V + G L++AL + SM P+ +W TL+ RVHG++ L + + LD Sbjct: 214 SDISAYNSIIEMYSGCGSVEDALTVFNSMPERNLETWCGVIRCFAKNGQGEDAIDTFSRFKQEGNKPDGEMFKEIFFACGVLGDMNEGLLHFESMYKEYGIIPCMEHYVSLVKMLAEPGYLDEALRFVESM--EPNVDLWETLMNLSRVHGDLILGDRCQDMVEQLD 378
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PPR63_ARATH (Pentatricopeptide repeat-containing protein At1g29710, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H67 PE=2 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 7.584e-19 Identity = 51/163 (31.29%), Postives = 81/163 (49.69%), Query Frame = 3 Query: 39 AESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLD 527 A + +I++Y+ C ++D A VF+ M M+ + +G+ ++++ LF KP+ F + S C G V+ G F M EYGI MEHY + + +G L++AL + MP P VW TL+ RVHG+VEL + + + LD Sbjct: 156 ARNAIIEMYSGCCSVDDALKVFEEMPEWNSGTLCVMMRCFVNNGYGEEAIDLFTRFKEEGNKPNGEIFNQVFSTCTLTGDVKEGSLQFQAMYREYGIVPSMEHYHSVTKMLATSGHLDEALNFVERMPMEPSVDVWETLMNLSRVHGDVELGDRCAELVEKLD 318
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP183_ARATH (Pentatricopeptide repeat-containing protein At2g34370, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H25 PE=2 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 2.206e-18 Identity = 45/159 (28.30%), Postives = 80/159 (50.31%), Query Frame = 3 Query: 51 LIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLD 527 +I++Y+ C + D A VF+ M ++ W +MI +G + ++ +F + KPD F A+ AC G + G+ +F M +YG+ ME Y ++++ G L++AL+ + M P +W TL+ C V G +EL + + + LD Sbjct: 149 VIEMYSGCRSTDDALNVFNEMPKRNSETWGTMIRCLAKNGEGERAIDMFTRFIEEGNKPDKEIFKAVFFACVSIGDINEGLLHFESMYRDYGMVLSMEDYVNVIEMLAACGHLDEALDFVERMTVEPSVEMWETLMNLCWVQGYLELGDRFAELIKKLD 307
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP115_ARATH (Pentatricopeptide repeat-containing protein At1g71460, chloroplastic OS=Arabidopsis thaliana GN=PCMP-A3 PE=2 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 1.868e-17 Identity = 41/131 (31.30%), Postives = 70/131 (53.44%), Query Frame = 3 Query: 6 MIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKA 398 ++K S + +I +Y KCG+L A FD + K W ++I AYGC+ +D++ F +M++ P+ TF A++S C AG V+ +F+ M Y + EHY+ +++L R GR+ +A Sbjct: 545 ILKKEFESIPFVSARIIKMYGKCGDLRSANFSFDAVAVKGSLTWTAIIEAYGCNELFRDAINCFEQMVSRGFTPNTFTFTAVLSICSQAGFVDEAYRFFNLMLRMYNLQPSEEHYSLVIELLNRCGRVEEA 675
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP319_ARATH (Pentatricopeptide repeat-containing protein At4g18520 OS=Arabidopsis thaliana GN=PCMP-A2 PE=2 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 8.121e-13 Identity = 42/160 (26.25%), Postives = 78/160 (48.75%), Query Frame = 3 Query: 3 LMIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGN 482 L++K ++D + L+D+YAKCG + R VFD M + W S+IAA+ G +++++LF M + +++T ++I+ ACG G + G H + I + + +V L+ + G A + +P + D W ++ C G+ Sbjct: 309 LVVKRMIKTDVFVGTSLMDMYAKCGEISDCRKVFDGMSNRNTVTWTSIIAAHAREGFGEEAISLFRIMKRRHLIANNLTVVSILRACGSVGALLLG-KELHAQIIKNSIEKNVYIGSTLVWLYCKCGESRDAFNVLQQLP-SRDVVSWTAMISGCSSLGH 466
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PPR43_ARATH (Pentatricopeptide repeat-containing protein At1g14470 OS=Arabidopsis thaliana GN=PCMP-A4 PE=2 SV=2) HSP 1 Score: 70.4774 bits (171), Expect = 6.875e-12 Identity = 42/150 (28.00%), Postives = 75/150 (50.00%), Query Frame = 3 Query: 45 SVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLN-NKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTE---EYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGN 482 + +I Y + G++ AR +FD M ++ +WNS+IA Y +G ++ F +M++ KPD VT ++++SACGH +E G C+ + + I Y ++ ++ R G L +A + M D + TL A +G+ Sbjct: 335 NAMISGYTRIGDMSSARQLFDTMPKRNVVSWNSLIAGYAHNGQAALAIEFFEDMIDYGDSKPDEVTMISVLSACGHMADLELG----DCIVDYIRKNQIKLNDSGYRSLIFMYARGGNLWEAKRVFDEMK-ERDVVSYNTLFTAFAANGD 479
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PPR9_ARATH (Pentatricopeptide repeat-containing protein At1g03560, mitochondrial OS=Arabidopsis thaliana GN=At1g03560 PE=2 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 2.612e-11 Identity = 46/159 (28.93%), Postives = 79/159 (49.69%), Query Frame = 3 Query: 39 AESVLIDLYAKCGNLDFARTVFDMMXRKQE----AAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKA---LETINSMPFAPDAGVWGTLLGACRVHGNVELA 494 A S++I K G L+ TVF+ M RK A + +I Y G ++D++ L H M++ KPD VT+ +++ G+VE + YFH + G+ Y+ ++D G+AGR+++A E ++ D+ + L+ A H V+ A Sbjct: 329 AFSLVIGGLCKEGKLNEGYTVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFHTCRFD-GLAINSMFYSSLIDGLGKAGRVDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHRKVDEA 486
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP124_ARATH (Pentatricopeptide repeat-containing protein At1g74850, chloroplastic OS=Arabidopsis thaliana GN=PTAC2 PE=2 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 2.612e-11 Identity = 51/174 (29.31%), Postives = 81/174 (46.55%), Query Frame = 3 Query: 21 CRSDNIAESVLIDLYAKCGNLDFARTVFDMMXRKQE----AAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFA---PDAGVWGTLLGACRVHGNVELAEVASSHLFD 521 C + SVL++L+ + G D R +F M A +N +I +G G+ K+ + LFH+M+ I+PD T+ II ACG G E MT +P+ + Y +++ FG+A +AL N+M P + +LL + G V+ +E S L D Sbjct: 348 CTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHEDARKILQYMTANDIVPS-SKAYTGVIEAFGQAALYEEALVAFNTMHEVGSNPSIETFHSLLYSFARGGLVKESEAILSRLVD 520 The following BLAST results are available for this feature:
BLAST of CX288721 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 200
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Sequences
The
following sequences are available for this feature:
EST sequence >CX288721 ID=CX288721; Name=CX288721; organism=Citrus clementina; type=EST; length=581bpback to top |