CX288721
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP390_ARATH (Pentatricopeptide repeat-containing protein At5g16860 OS=Arabidopsis thaliana GN=PCMP-H92 PE=2 SV=1) HSP 1 Score: 177.563 bits (449), Expect = 3.993e-44 Identity = 83/177 (46.89%), Postives = 111/177 (62.71%), Query Frame = 3 Query: 51 LIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAG 581 LID+YAKCG++ AR VFD M K E W S++ YG HG+ +++L +F EM K D VT L ++ AC H+G ++ G+ YF+ M +G+ EHYAC+VDL GRAGRLN AL I MP P VW L CR+HG VEL E A+ + +L + G Y LLSN++A+AG Sbjct: 519 LIDMYAKCGSISDARLVFDNMMAKNEVTWTSLMTGYGMHGYGEEALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTVFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVAFLSCCRIHGKVELGEYAAEKITELASNHDGSYTLLSNLYANAG 695 HSP 2 Score: 79.337 bits (194), Expect = 1.480e-14 Identity = 53/204 (25.98%), Postives = 88/204 (43.14%), Query Frame = 3 Query: 51 LIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALF-----------------------------------HEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYA-------CMVDLFGRAGRLNKALETINSM-PFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQ 533 L+D+YAKCG +D A TVF M K +WN+M+A Y G +D++ LF +ML++ IKP+ VT ++++S C G + G HC +Y I R + ++D++ + +++ A +S+ P D W ++G HG+ A S +F+ D Q Sbjct: 270 LVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHG-KEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQ 472 HSP 3 Score: 71.2478 bits (173), Expect = 4.030e-12 Identity = 45/167 (26.95%), Postives = 79/167 (47.31%), Query Frame = 3 Query: 12 KDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMXRKQE--AAWNSMIAAYGCHGHLKDSLALFHEMLNN--KIKPDHVTFLAIISACGHAGQVEAG--IHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELA 494 K+ +N+ + LID+YAKC +D AR +FD + K+ W MI Y HG +L L EM + +P+ T + AC + G IH + ++ +P + + C++D++ + G ++ A ++M A + W +L+ +HG E A Sbjct: 400 KNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQQNAVPLFVSN--CLIDMYAKCGSISDARLVFDNM-MAKNEVTWTSLMTGYGMHGYGEEA 563
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP320_ARATH (Pentatricopeptide repeat-containing protein At4g18750, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2 SV=1) HSP 1 Score: 177.563 bits (449), Expect = 3.993e-44 Identity = 82/184 (44.57%), Postives = 122/184 (66.30%), Query Frame = 3 Query: 27 SDNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADA 578 SD + L+D+YAKCG L A +FD + K +W MIA YG HG K+++ALF++M I+ D ++F++++ AC H+G V+ G +F+ M E I +EHYAC+VD+ R G L KA I +MP PDA +WG LL CR+H +V+LAE + +F+L+P+N+GYYVL++NI+A+A Sbjct: 532 SDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFELEPENTGYYVLMANIYAEA 715 HSP 2 Score: 67.3958 bits (163), Expect = 5.820e-11 Identity = 40/140 (28.57%), Postives = 71/140 (50.71%), Query Frame = 3 Query: 45 SVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTE-EYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLG 461 + L+D+Y+KCG+LD A+ VF M + ++ SMIA Y G +++ LF EM I PD T A+++ C ++ G + E + G + + ++D++ + G + +A E + S D W T++G Sbjct: 335 NTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSN--ALMDMYAKCGSMQEA-ELVFSEMRVKDIISWNTIIG 471
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP411_ARATH (Pentatricopeptide repeat-containing protein At5g40410, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H15 PE=2 SV=1) HSP 1 Score: 177.178 bits (448), Expect = 5.215e-44 Identity = 82/179 (45.81%), Postives = 118/179 (65.92%), Query Frame = 3 Query: 45 SVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAG 581 + L+DLY+K G L+ + TVF + AW +M+AAY HG +D++ F M++ I PDHVTF +++AC H+G VE G HYF M++ Y I R++HY+CMVDL GR+G L A I MP P +GVWG LLGACRV+ + +L A+ LF+L+P++ YV+LSNI++ +G Sbjct: 274 TALLDLYSKLGRLEDSSTVFHEITSPDSMAWTAMLAAYATHGFGRDAIKHFELMVHYGISPDHVTFTHLLNACSHSGLVEEGKHYFETMSKRYRIDPRLDHYSCMVDLLGRSGLLQDAYGLIKEMPMEPSSGVWGALLGACRVYKDTQLGTKAAERLFELEPRDGRNYVMLSNIYSASG 452
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP364_ARATH (Pentatricopeptide repeat-containing protein At5g04780 OS=Arabidopsis thaliana GN=PCMP-H16 PE=2 SV=2) HSP 1 Score: 176.022 bits (445), Expect = 1.162e-43 Identity = 82/190 (43.16%), Postives = 124/190 (65.26%), Query Frame = 3 Query: 3 LMIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHA 572 ++ K S+ S +D+YAKCG+L + +F + K WN++I+ + H K+ + LF +M + + P+ VTF +++S CGH G VE G +F M YG+ + HY+CMVD+ GRAG L++A E I S+PF P A +WG+LL +CRV+ N+ELAEVA+ LF+L+P+N+G +VLLSNI+A Sbjct: 288 VICKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNLELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAGLLSEAYELIKSIPFDPTASIWGSLLASCRVYKNLELAEVAAEKLFELEPENAGNHVLLSNIYA 477 HSP 2 Score: 70.0922 bits (170), Expect = 8.979e-12 Identity = 41/139 (29.50%), Postives = 71/139 (51.08%), Query Frame = 3 Query: 6 MIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACG-HAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSM 419 +I+ D +VLI+ Y+KCG ++ AR VFD M + +WN+MI Y + ++L +F EM N K T +++SACG + +E HC++ + I + ++DL+ + G + A++ SM Sbjct: 87 IIRIDLEGDVTLLNVLINAYSKCGFVELARQVFDGMLERSLVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSACGVNCDALEC--KKLHCLSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESM 223
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP272_ARATH (Pentatricopeptide repeat-containing protein At3g49170, chloroplastic OS=Arabidopsis thaliana GN=EMB2261 PE=2 SV=1) HSP 1 Score: 176.022 bits (445), Expect = 1.162e-43 Identity = 84/179 (46.93%), Postives = 114/179 (63.69%), Query Frame = 3 Query: 45 SVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAG 581 + LI +Y+KCG++D A VF+ M + +W SMI + HG L F++M+ +KP+ VT++AI+SAC H G V G +F+ M E++ I +MEHYACMVDL RAG L A E IN+MPF D VW T LGACRVH N EL ++A+ + +LDP Y+ LSNI+A AG Sbjct: 513 NALISMYSKCGSIDTASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFINTMPFQADVLVWRTFLGACRVHSNTELGKLAARKILELDPNEPAAYIQLSNIYACAG 691
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP433_ARATH (Pentatricopeptide repeat-containing protein At5g56310 OS=Arabidopsis thaliana GN=PCMP-E13 PE=2 SV=1) HSP 1 Score: 175.637 bits (444), Expect = 1.517e-43 Identity = 81/179 (45.25%), Postives = 119/179 (66.48%), Query Frame = 3 Query: 45 SVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAG 581 + +ID+YAK GN+ A VF+ + + W ++IA HGH ++LA+F+ M+ ++P+ VTF+AI+SAC H G V+ G F+ M +YGI +EHY CM+DL GRAG+L +A E I SMPF +A +WG+LL A VH ++EL E A S L L+P NSG Y+LL+N++++ G Sbjct: 289 NAVIDMYAKSGNITKALDVFECVNERNVVTWTTIIAGLATHGHGAEALAMFNRMVKAGVRPNDVTFIAILSACSHVGWVDLGKRLFNSMRSKYGIHPNIEHYGCMIDLLGRAGKLREADEVIKSMPFKANAAIWGSLLAASNVHHDLELGERALSELIKLEPNNSGNYMLLANLYSNLG 467 HSP 2 Score: 74.3294 bits (181), Expect = 4.761e-13 Identity = 39/148 (26.35%), Postives = 74/148 (50.00%), Query Frame = 3 Query: 45 SVLIDLYAKCGNLDFARTVFDMMXR--KQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGN 482 + L+ Y K G +D AR++ +MM + E +W +I+ Y G +++ +F ML ++PD VT LA++SAC G +E G + G+ + ++D++ ++G + KAL+ + + W T++ HG+ Sbjct: 186 NALLAGYGKVGEMDEARSLLEMMPCWVRNEVSWTCVISGYAKSGRASEAIEVFQRMLMENVEPDEVTLLAVLSACADLGSLELG-ERICSYVDHRGMNRAVSLNNAVIDMYAKSGNITKALDVFECVN-ERNVVTWTTIIAGLATHGH 331
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP227_ARATH (Putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H85 PE=3 SV=1) HSP 1 Score: 175.637 bits (444), Expect = 1.517e-43 Identity = 84/184 (45.65%), Postives = 121/184 (65.76%), Query Frame = 3 Query: 36 IAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNK-IKPDHVTFLAIISACGHAGQVEAGIHYFHCMTE-EYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAG 581 + ++ LID+Y+KCGNL +AR +FD M + +WN+M+ Y HG ++ L LF M + K +KPD VT LA++S C H + G++ F M EYG EHY C+VD+ GRAGR+++A E I MP P AGV G+LLGACRVH +V++ E L +++P+N+G YV+LSN++A AG Sbjct: 290 VLQNSLIDMYSKCGNLSYARRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVTLLAVLSGCSHGRMEDTGLNIFDGMVAGEYGTKPGTEHYGCIVDMLGRAGRIDEAFEFIKRMPSKPTAGVLGSLLGACRVHLSVDIGESVGRRLIEIEPENAGNYVILSNLYASAG 473 HSP 2 Score: 70.4774 bits (171), Expect = 6.875e-12 Identity = 38/139 (27.34%), Postives = 70/139 (50.36%), Query Frame = 3 Query: 6 MIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMP 422 MIK + L+ Y KC L+ AR V D M K +W +MI+ Y GH ++L +F EM+ + KP+ TF ++++C A + G H + ++ + + + ++D++ +AG++ +A E +P Sbjct: 78 MIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTSCIRASGLGLG-KQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIKEAREIFECLP 215
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP371_ARATH (Pentatricopeptide repeat-containing protein At5g08510 OS=Arabidopsis thaliana GN=PCMP-E20 PE=2 SV=1) HSP 1 Score: 175.252 bits (443), Expect = 1.982e-43 Identity = 83/174 (47.70%), Postives = 115/174 (66.09%), Query Frame = 3 Query: 54 IDLYAKCGNLDFARTVFDMMXRKQE-AAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHA 572 I++Y+KCG +D A+ +F+ + ++ +WNSMI + HG ++L LF +ML KPD VTF+ ++ AC H G V G F M E + I ++EHY CM+DL GR G+L +A + I +MP PDA VWGTLLGAC HGNVE+AE+AS LF L+P N G V++SNI+A Sbjct: 257 IEMYSKCGMIDVAKRLFEELGNQRNLCSWNSMIGSLATHGKHDEALTLFAQMLREGEKPDAVTFVGLLLACVHGGMVVKGQELFKSMEEVHKISPKLEHYGCMIDLLGRVGKLQEAYDLIKTMPMKPDAVVWGTLLGACSFHGNVEIAEIASEALFKLEPTNPGNCVIMSNIYA 430
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP315_ARATH (Pentatricopeptide repeat-containing protein At4g16470 OS=Arabidopsis thaliana GN=PCMP-E12 PE=2 SV=2) HSP 1 Score: 174.866 bits (442), Expect = 2.588e-43 Identity = 81/193 (41.97%), Postives = 117/193 (60.62%), Query Frame = 3 Query: 3 LMIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAG 581 +MIK +S+ I +S L+D+Y KC + VFD + + W S+I+ YG HG + + L F +M +P+ VTFL +++AC H G V+ G +F+ M +YGI +HYA MVD GRAGRL +A E + P VWG+LLGACR+HGNV+L E+A++ +LDP N G YV+ +N +A G Sbjct: 234 VMIKRCIKSNIIVDSALVDMYFKCSSFSDGHRVFDQLSTRNVITWTSLISGYGYHGKVSEVLKCFEKMKEEGCRPNPVTFLVVLTACNHGGLVDKGWEHFYSMKRDYGIEPEGQHYAAMVDTLGRAGRLQEAYEFVMKSPCKEHPPVWGSLLGACRIHGNVKLLELAATKFLELDPTNGGNYVVFANGYASCG 426
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP224_ARATH (Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1) HSP 1 Score: 174.866 bits (442), Expect = 2.588e-43 Identity = 81/185 (43.78%), Postives = 118/185 (63.78%), Query Frame = 3 Query: 24 RSDNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADA 578 R D S LID++AKCG+++ AR VFD + W++MI YG HG +++++L+ M + P+ VTFL ++ AC H+G V G +F+ M + + I + +HYAC++DL GRAG L++A E I MP P VWG LL AC+ H +VEL E A+ LF +DP N+G+YV LSN++A A Sbjct: 355 RDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFFNRMAD-HKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAA 538 HSP 2 Score: 78.1814 bits (191), Expect = 3.297e-14 Identity = 41/146 (28.08%), Postives = 74/146 (50.68%), Query Frame = 3 Query: 60 LYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVE-AGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELA 494 +YAKCG + A+ +FD M WN+MI+ Y +G+ ++++ +FHEM+N ++PD ++ + ISAC G +E A Y + +Y + + ++D+F + G + A + D VW ++ +HG A Sbjct: 266 MYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFIS--SALIDMFAKCGSVEGA-RLVFDRTLDRDVVVWSAMIVGYGLHGRAREA 408 The following BLAST results are available for this feature:
BLAST of CX288721 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 200
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX288721 ID=CX288721; Name=CX288721; organism=Citrus clementina; type=EST; length=581bpback to top |