CX288721
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP373_ARATH (Putative pentatricopeptide repeat-containing protein At5g09950 OS=Arabidopsis thaliana GN=PCMP-H35 PE=3 SV=1) HSP 1 Score: 174.481 bits (441), Expect = 3.381e-43 Identity = 84/194 (43.30%), Postives = 125/194 (64.43%), Query Frame = 3 Query: 9 IKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEM-LNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGA-CRVHG-NVELAEVASSHLFDLDPQNSGYYVLLSNIHADAG 581 ++ SD + S L+D+Y+KCG LD+A F+ M + +WNSMI+ Y HG +++L LF M L+ + PDHVTF+ ++SAC HAG +E G +F M++ YG+ R+EH++CM D+ GRAG L+K + I MP P+ +W T+LGA CR +G EL + A+ LF L+P+N+ YVLL N++A G Sbjct: 646 VRACLESDVVVGSALVDMYSKCGRLDYALRFFNTMPVRNSYSWNSMISGYARHGQGEEALKLFETMKLDGQTPPDHVTFVGVLSACSHAGLLEEGFKHFESMSDSYGLAPRIEHFSCMADVLGRAGELDKLEDFIEKMPMKPNVLIWRTVLGACCRANGRKAELGKKAAEMLFQLEPENAVNYVLLGNMYAAGG 839 HSP 2 Score: 69.3218 bits (168), Expect = 1.532e-11 Identity = 45/165 (27.27%), Postives = 77/165 (46.67%), Query Frame = 3 Query: 3 LMIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMX-RKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELA 494 L +K++ + E+ LI Y KCG +D +F M R+ WNSMI+ Y + L +L L ML + D + ++SA +E G+ C + + + + +VD++ + GRL+ AL N+MP ++ W +++ HG E A Sbjct: 542 LALKNNIADEATTENALIACYGKCGEMDGCEKIFSRMAERRDNVTWNSMISGYIHNELLAKALDLVWFMLQTGQRLDSFMYATVLSAFASVATLERGMEVHACSVRAC-LESDVVVGSALVDMYSKCGRLDYALRFFNTMP-VRNSYSWNSMISGYARHGQGEEA 704 HSP 3 Score: 67.0106 bits (162), Expect = 7.601e-11 Identity = 39/138 (28.26%), Postives = 68/138 (49.28%), Query Frame = 3 Query: 51 LIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGA 464 L+++YAKCG++ AR VF M K +WNSMI +G +++ + M + I P T ++ +S+C + G H + + GI + ++ L+ G LN+ + +SMP D W +++GA Sbjct: 355 LVNMYAKCGSIADARRVFYFMTDKDSVSWNSMITGLDQNGCFIEAVERYKSMRRHDILPGSFTLISSLSSCASLKWAKLG-QQIHGESLKLGIDLNVSVSNALMTLYAETGYLNECRKIFSSMP-EHDQVSWNSIIGA 490
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP359_ARATH (Pentatricopeptide repeat-containing protein At4g39952, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E98 PE=2 SV=2) HSP 1 Score: 174.096 bits (440), Expect = 4.415e-43 Identity = 80/179 (44.69%), Postives = 117/179 (65.36%), Query Frame = 3 Query: 45 SVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAG 581 + LID+YAKCG+L+ +R +FD +K WN MI+ YG HG ++ ++ALF +M + +KP TFLA++SAC HAG VE G F M +Y + ++HY+C+VDL R+G L +A T+ SMPF+PD +WGTLL +C HG E+ + DPQN GYY++L+N+++ AG Sbjct: 572 AALIDMYAKCGHLEKSRELFDAGNQKDAVCWNVMISGYGMHGDVESAIALFDQMEESDVKPTGPTFLALLSACTHAGLVEQGKKLFLKM-HQYDVKPNLKHYSCLVDLLSRSGNLEEAESTVMSMPFSPDGVIWGTLLSSCMTHGEFEMGIRMAERAVASDPQNDGYYIMLANMYSAAG 749 HSP 2 Score: 73.559 bits (179), Expect = 8.121e-13 Identity = 51/174 (29.31%), Postives = 83/174 (47.70%), Query Frame = 3 Query: 51 LIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAG--IHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHL--FDLDPQNSGYYVLLS 560 LIDLY K G+L A +F WN+MIA+Y + ++ALF M++ KP +T + ++ AC + G +E G IH + TE + A ++D++ + G L K+ E ++ DA W ++ +HG+VE A + D+ P + LLS Sbjct: 474 LIDLYGKMGDLTVAWRMF-CEADTNVITWNAMIASYVHCEQSEKAIALFDRMVSENFKPSSITLVTLLMACVNTGSLERGQMIHRYITETEH---EMNLSLSAALIDMYAKCGHLEKSRELFDA-GNQKDAVCWNVMISGYGMHGDVESAIALFDQMEESDVKPTGPTFLALLS 642
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP354_ARATH (Pentatricopeptide repeat-containing protein At4g37380, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H48 PE=2 SV=1) HSP 1 Score: 174.096 bits (440), Expect = 4.415e-43 Identity = 83/178 (46.63%), Postives = 119/178 (66.85%), Query Frame = 3 Query: 51 LIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLN-NKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAG 581 LID+Y+KCG+L+ A VF+ RK AWN+MIA Y HG+ +D+L LF+EM ++P +TF+ + AC HAG V GI F M +EYGI ++EHY C+V L GRAG+L +A ETI +M D+ +W ++LG+C++HG+ L + + +L L+ +NSG YVLLSNI+A G Sbjct: 300 LIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGYAMHGYSQDALRLFNEMQGITGLQPTDITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYETIKNMNMDADSVLWSSVLGSCKLHGDFVLGKEIAEYLIGLNIKNSGIYVLLSNIYASVG 477 HSP 2 Score: 90.5077 bits (223), Expect = 6.420e-18 Identity = 47/149 (31.54%), Postives = 77/149 (51.68%), Query Frame = 3 Query: 36 IAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEML-NNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHG 479 ++ + +I YAK GN++ AR +FD M + +WN MI Y HG D+L LF ++L K KPD +T +A +SAC G +E G + H + I ++ ++D++ + G L +A+ N P D W ++ +HG Sbjct: 193 VSSTAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAEGKPKPDEITVVAALSACSQIGALETG-RWIHVFVKSSRIRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTP-RKDIVAWNAMIAGYAMHG 339
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP330_ARATH (Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2) HSP 1 Score: 173.711 bits (439), Expect = 5.766e-43 Identity = 86/190 (45.26%), Postives = 121/190 (63.68%), Query Frame = 3 Query: 6 MIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNK-IKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHA 572 MIK + + +VL+DLYA+CG ++ A+T+FD M K +W S+I +G K+++ LF M + + + P +TF+ I+ AC H G V+ G YF M EEY I R+EH+ CMVDL RAG++ KA E I SMP P+ +W TLLGAC VHG+ +LAE A + L+P +SG YVLLSN++A Sbjct: 248 MIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSNMYA 437 HSP 2 Score: 79.7221 bits (195), Expect = 1.133e-14 Identity = 46/146 (31.51%), Postives = 78/146 (53.42%), Query Frame = 3 Query: 42 ESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHG 479 ++ L+ LYA CG++ A VFD M K AWNS+I + +G +++LAL+ EM + IKPD T ++++SAC G + G H + G+ + ++DL+ R GR+ +A + M ++ W +L+ V+G Sbjct: 159 QNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLG-KRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEM-VDKNSVSWTSLIVGLAVNG 302
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP232_ARATH (Putative pentatricopeptide repeat-containing protein At3g15130 OS=Arabidopsis thaliana GN=PCMP-H86 PE=3 SV=1) HSP 1 Score: 172.94 bits (437), Expect = 9.836e-43 Identity = 79/177 (44.63%), Postives = 114/177 (64.41%), Query Frame = 3 Query: 51 LIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAG 581 ++D+Y KCG +D A F M K +W +I YG HG K S+ +F+EML + I+PD V +LA++SAC H+G ++ G F + E +GI R+EHYAC+VDL GRAGRL +A I++MP P+ G+W TLL CRVHG++EL + L +D +N YV++SN++ AG Sbjct: 354 VVDMYLKCGLVDEAEKCFAEMQLKDVISWTVVITGYGKHGLGKKSVRIFYEMLRHNIEPDEVCYLAVLSACSHSGMIKEGEELFSKLLETHGIKPRVEHYACVVDLLGRAGRLKEAKHLIDTMPIKPNVGIWQTLLSLCRVHGDIELGKEVGKILLRIDAKNPANYVMMSNLYGQAG 530 HSP 2 Score: 74.7146 bits (182), Expect = 3.645e-13 Identity = 41/131 (31.30%), Postives = 68/131 (51.91%), Query Frame = 3 Query: 6 MIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKA 398 ++K + I + LID+Y KC A VFD M + +W+++++ + +G LK SL+LF EM I P+ TF + ACG +E G+ H + G +E +VD++ + GR+N+A Sbjct: 32 LLKSGSGLNLITSNYLIDMYCKCREPLMAYKVFDSMPERNVVSWSALMSGHVLNGDLKGSLSLFSEMGRQGIYPNEFTFSTNLKACGLLNALEKGLQ-IHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEA 161
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PPR57_ARATH (Pentatricopeptide repeat-containing protein At1g25360 OS=Arabidopsis thaliana GN=PCMP-H74 PE=2 SV=1) HSP 1 Score: 172.555 bits (436), Expect = 1.285e-42 Identity = 84/192 (43.75%), Postives = 119/192 (61.98%), Query Frame = 3 Query: 6 MIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAG 581 ++K S A + LI +YAKCG ++ AR VF M +WN++IAA G HGH +++ ++ EML I+PD +T L +++AC HAG V+ G YF M Y IP +HYA ++DL R+G+ + A I S+PF P A +W LL CRVHGN+EL +A+ LF L P++ G Y+LLSN+HA G Sbjct: 443 LLKIGFDSSLSAGNALITMYAKCGVVEEARQVFRTMPCLDSVSWNALIAALGQHGHGAEAVDVYEEMLKKGIRPDRITLLTVLTACSHAGLVDQGRKYFDSMETVYRIPPGADHYARLIDLLCRSGKFSDAESVIESLPFKPTAEIWEALLSGCRVHGNMELGIIAADKLFGLIPEHDGTYMLLSNMHAATG 634
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP116_ARATH (Pentatricopeptide repeat-containing protein At1g71490 OS=Arabidopsis thaliana GN=PCMP-E67 PE=2 SV=1) HSP 1 Score: 172.555 bits (436), Expect = 1.285e-42 Identity = 81/177 (45.76%), Postives = 117/177 (66.10%), Query Frame = 3 Query: 51 LIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAG 581 L+D+YAK G + A+ V D+M ++ E + S+I YG G +LALF EM + IKPDHVT +A++SAC H+ V G F M EYGI ++H++CMVDL+GRAG L KA + I++MP+ P W TLL AC +HGN ++ + A+ L ++ P+N GYYVL++N++A AG Sbjct: 423 LVDVYAKSGKIVAAKQVSDLMSKRDEVTYTSLIDGYGNQGEGGVALALFKEMTRSGIKPDHVTVVAVLSACSHSKLVHEGERLFMKMQCEYGIRPCLQHFSCMVDLYGRAGFLAKAKDIIHNMPYKPSGATWATLLNACHIHGNTQIGKWAAEKLLEMKPENPGYYVLIANMYAAAG 599
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP415_ARATH (Pentatricopeptide repeat-containing protein At5g43790 OS=Arabidopsis thaliana GN=PCMP-E30 PE=2 SV=1) HSP 1 Score: 172.17 bits (435), Expect = 1.678e-42 Identity = 81/189 (42.86%), Postives = 121/189 (64.02%), Query Frame = 3 Query: 6 MIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHA 572 ++K++ + + LIDLY+KCG L FAR VFD M ++ + +N+MI HG ++ + L+ +++ + PD TF+ ISAC H+G V+ G+ F+ M YGI ++EHY C+VDL GR+GRL +A E I MP P+A +W + LG+ + HG+ E E+A HL L+ +NSG YVLLSNI+A Sbjct: 242 VLKNNLTLNQFVGTSLIDLYSKCGCLSFARKVFDEMSQRDVSCYNAMIRGLAVHGFGQEGIELYKSLISQGLVPDSATFVVTISACSHSGLVDEGLQIFNSMKAVYGIEPKVEHYGCLVDLLGRSGRLEEAEECIKKMPVKPNATLWRSFLGSSQTHGDFERGEIALKHLLGLEFENSGNYVLLSNIYA 430
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP394_ARATH (Pentatricopeptide repeat-containing protein At5g19020, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E42 PE=2 SV=1) HSP 1 Score: 172.17 bits (435), Expect = 1.678e-42 Identity = 83/188 (44.15%), Postives = 121/188 (64.36%), Query Frame = 3 Query: 27 SDNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAA---WNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAG 581 +DN+ ++ ID+YAKCG+++ A +F + WN++I HGH K +L L+ ++ + IKP+ +TF+ ++SAC HAG VE G YF M ++GI ++HY CMVDL G+AGRL +A E I MP D +WG LL A R HGNVE+AE+A++ L +DP + G V+LSN++ADAG Sbjct: 472 NDNLTAAI-IDMYAKCGSIETALNIFHQTKNISSSTISPWNAIICGSATHGHAKLALDLYSDLQSLPIKPNSITFVGVLSACCHAGLVELGKTYFESMKSDHGIEPDIKHYGCMVDLLGKAGRLEEAKEMIKKMPVKADVMIWGMLLSASRTHGNVEIAELAATELAAIDPSHGGCKVMLSNVYADAG 658
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP168_ARATH (Pentatricopeptide repeat-containing protein At2g22070 OS=Arabidopsis thaliana GN=PCMP-H41 PE=2 SV=1) HSP 1 Score: 172.17 bits (435), Expect = 1.678e-42 Identity = 83/180 (46.11%), Postives = 115/180 (63.89%), Query Frame = 3 Query: 45 SVLIDLYAKCGNLDFARTVFDMMXRKQEA-AWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAG 581 + LI +YAK GN+ A FD++ +++ +W SMI A HGH +++L LF ML ++PDH+T++ + SAC HAG V G YF M + I + HYACMVDLFGRAG L +A E I MP PD WG+LL ACRVH N++L +VA+ L L+P+NSG Y L+N+++ G Sbjct: 452 NALITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVHKNIDLGKVAAERLLLLEPENSGAYSALANLYSACG 631 The following BLAST results are available for this feature:
BLAST of CX288721 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 200
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX288721 ID=CX288721; Name=CX288721; organism=Citrus clementina; type=EST; length=581bpback to top |