CX288721
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP251_ARATH (Putative pentatricopeptide repeat-containing protein At3g23330 OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1) HSP 1 Score: 171.785 bits (434), Expect = 2.191e-42 Identity = 77/179 (43.02%), Postives = 114/179 (63.69%), Query Frame = 3 Query: 45 SVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAG 581 S L+D+Y+KCGN+ AR +FD M E +W ++I + HGH ++++LF EM +KP+ V F+A+++AC H G V+ YF+ MT+ YG+ +EHYA + DL GRAG+L +A I+ M P VW TLL +C VH N+ELAE + +F +D +N G YVL+ N++A G Sbjct: 382 SALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYNFISKMCVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTVDSENMGAYVLMCNMYASNG 560 HSP 2 Score: 75.8702 bits (185), Expect = 1.636e-13 Identity = 41/159 (25.79%), Postives = 77/159 (48.43%), Query Frame = 3 Query: 6 MIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGN 482 +I+ SD S L+D+YAK ++ + VF + + +WNS++A Y +G ++L LF +M+ K+KP V F ++I AC H + G H G + + + +VD++ + G + A + + M + W ++ +HG+ Sbjct: 268 VIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLG-KQLHGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVS-WTAIIMGHALHGH 424
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP108_ARATH (Putative pentatricopeptide repeat-containing protein At1g68930 OS=Arabidopsis thaliana GN=PCMP-H22 PE=3 SV=1) HSP 1 Score: 171.4 bits (433), Expect = 2.862e-42 Identity = 81/177 (45.76%), Postives = 114/177 (64.41%), Query Frame = 3 Query: 51 LIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAG 581 L+ LY KCG++D + +F+ M + +W +M++AY G +++ LF +M+ + +KPD VT +ISAC AG VE G YF MT EYGI + HY+CM+DLF R+GRL +A+ IN MPF PDA W TLL ACR GN+E+ + A+ L +LDP + Y LLS+I+A G Sbjct: 412 LVTLYGKCGDIDDSTRLFNEMNVRDAVSWTAMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVISACSRAGLVEKGQRYFKLMTSEYGIVPSIGHYSCMIDLFSRSGRLEEAMRFINGMPFPPDAIGWTTLLSACRNKGNLEIGKWAAESLIELDPHHPAGYTLLSSIYASKG 588 HSP 2 Score: 83.5741 bits (205), Expect = 7.848e-16 Identity = 51/159 (32.08%), Postives = 78/159 (49.06%), Query Frame = 3 Query: 45 SVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFD 521 S LID+Y KC L +A+TVFD M +K +W +M+ YG G ++++ +F +M + I PDH T ISAC + +E G FH G+ + +V L+G+ G ++ + N M DA W ++ A G V + LFD Sbjct: 309 SALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISACANVSSLEEG-SQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMN-VRDAVSWTAMVSAYAQFGRA----VETIQLFD 461
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP449_ARATH (Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1) HSP 1 Score: 171.014 bits (432), Expect = 3.738e-42 Identity = 81/187 (43.32%), Postives = 116/187 (62.03%), Query Frame = 3 Query: 12 KDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHA 572 K R D++ VLID+YAKCG ++ A VF + +K AW ++I+ Y HGH +++++ F EM IKP+ +TF A+++AC + G VE G F+ M +Y + +EHY C+VDL GRAG L++A I MP P+A +WG LL ACR+H N+EL E L +DP + G YV +NIHA Sbjct: 275 KTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSMERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELGEEIGEILIAIDPYHGGRYVHKANIHA 461 HSP 2 Score: 79.337 bits (194), Expect = 1.480e-14 Identity = 43/151 (28.48%), Postives = 75/151 (49.67%), Query Frame = 3 Query: 30 DNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGN 482 D+++ + +I Y K G +D A T+F M K +W +MI+ Y K++L LFHEM N+ ++PD+V+ +SAC G +E G + H + I ++D++ + G + +ALE ++ W L+ HG+ Sbjct: 180 DDVSWNSVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQG-KWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIK-KKSVQAWTALISGYAYHGH 328
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP436_ARATH (Pentatricopeptide repeat-containing protein At5g59600 OS=Arabidopsis thaliana GN=PCMP-E1 PE=2 SV=1) HSP 1 Score: 171.014 bits (432), Expect = 3.738e-42 Identity = 85/179 (47.49%), Postives = 116/179 (64.80%), Query Frame = 3 Query: 45 SVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAG 581 S L+D+Y KCG + A +F +K +NSMI Y HG ++ LF +M K DH+TF AI++AC HAG + G + F M +Y I R+EHYACMVDL GRAG+L +A E I +M PD VWG LL ACR HGN+ELA +A+ HL +L+P+NSG +LL++++A+AG Sbjct: 327 SALLDMYGKCGFISEAMILFRKTPKKTTVTFNSMIFCYANHGLADKAVELFDQMEATGEKLDHLTFTAILTACSHAGLTDLGQNLFLLMQNKYRIVPRLEHYACMVDLLGRAGKLVEAYEMIKAMRMEPDLFVWGALLAACRNHGNMELARIAAKHLAELEPENSGNGLLLTSLYANAG 505
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP405_ARATH (Pentatricopeptide repeat-containing protein At5g39350 OS=Arabidopsis thaliana GN=PCMP-E16 PE=2 SV=1) HSP 1 Score: 171.014 bits (432), Expect = 3.738e-42 Identity = 80/185 (43.24%), Postives = 122/185 (65.95%), Query Frame = 3 Query: 39 AESVLIDLYAKCGNLDFARTVFDMMXRKQEAA----WNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAG 581 A + L+ +Y+KCG L+ A +F+ + K ++ W ++I+ YG HG ++L +F EM+ + + P+ +TF + ++AC H+G VE G+ F M E Y AR HY C+VDL GRAGRL++A I ++PF P + VWG LL AC H NV+L E+A++ LF+L+P+N+G YVLL+NI+A G Sbjct: 457 AATGLVHVYSKCGTLESAHKIFNGIQEKHKSKDVVLWGALISGYGMHGDGHNALQVFMEMVRSGVTPNEITFTSALNACSHSGLVEEGLTLFRFMLEHYKTLARSNHYTCIVDLLGRAGRLDEAYNLITTIPFEPTSTVWGALLAACVTHENVQLGEMAANKLFELEPENTGNYVLLANIYAALG 641 HSP 2 Score: 85.5001 bits (210), Expect = 2.065e-16 Identity = 44/155 (28.39%), Postives = 83/155 (53.55%), Query Frame = 3 Query: 30 DNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELA 494 D ++ L+ +Y G ++ AR VFD+M + +WN+MI+ Y +G++ D+L +F M+N + DH T ++++ CGH +E G H + EE + ++E +V+++ + GR+++A + M D W ++ G+VE A Sbjct: 151 DKYVQNALLAMYMNFGKVEMARDVFDVMKNRDVISWNTMISGYYRNGYMNDALMMFDWMVNESVDLDHATIVSMLPVCGHLKDLEMG-RNVHKLVEEKRLGDKIEVKNALVNMYLKCGRMDEARFVFDRME-RRDVITWTCMINGYTEDGDVENA 303
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP147_ARATH (Pentatricopeptide repeat-containing protein At2g03880, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H44 PE=2 SV=1) HSP 1 Score: 171.014 bits (432), Expect = 3.738e-42 Identity = 79/183 (43.17%), Postives = 121/183 (66.12%), Query Frame = 3 Query: 30 DNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADA 578 D I + L+D+Y KCG+L+ A VF+ M + W++MI+ +G+ +++L LF M ++ KP+++T + ++ AC HAG +E G +YF M + YGI EHY CM+DL G+AG+L+ A++ +N M PDA W TLLGACRV N+ LAE A+ + LDP+++G Y LLSNI+A++ Sbjct: 292 DLILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTLLSNIYANS 474
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP140_ARATH (Pentatricopeptide repeat-containing protein At2g01510, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H37 PE=2 SV=1) HSP 1 Score: 171.014 bits (432), Expect = 3.738e-42 Identity = 82/192 (42.71%), Postives = 119/192 (61.98%), Query Frame = 3 Query: 12 KDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTE--EYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAG 581 K+ + I E+ +D++ KCGN + AR +F+ M ++ +W++MI Y +G +++L LF M N ++P++VTFL ++SAC HAG V G YF M + + + R EHYACMVDL GR+G L +A E I MP PD G+WG LLGAC VH ++ L + + L + P Y+VLLSNI+A AG Sbjct: 238 KEEIDCNIIVENARLDMHLKCGNTEAARVLFEEMKQRNVVSWSTMIVGYAMNGDSREALTLFTTMQNEGLRPNYVTFLGVLSACSHAGLVNEGKRYFSLMVQSNDKNLEPRKEHYACMVDLLGRSGLLEEAYEFIKKMPVEPDTGIWGALLGACAVHRDMILGQKVADVLVETAPDIGSYHVLLSNIYAAAG 429
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP215_ARATH (Pentatricopeptide repeat-containing protein At3g05340 OS=Arabidopsis thaliana GN=PCMP-E83 PE=2 SV=2) HSP 1 Score: 170.629 bits (431), Expect = 4.881e-42 Identity = 79/193 (40.93%), Postives = 120/193 (62.18%), Query Frame = 3 Query: 3 LMIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAG 581 L+IK + + LI++Y+KCG+L ++TVF M ++ +WNSMIAA+ HGH +L L+ EM ++KP VTFL+++ AC H G ++ G + M E +GI R EHY C++D+ GRAG L +A I+S+P PD +W LLGAC HG+ E+ E A+ LF P +S ++L++NI++ G Sbjct: 382 LVIKRKFSGNTFVNNGLINMYSKCGDLTDSQTVFRRMPKRNYVSWNSMIAAFARHGHGLAALKLYEEMTTLEVKPTDVTFLSLLHACSHVGLIDKGRELLNEMKEVHGIEPRTEHYTCIIDMLGRAGLLKEAKSFIDSLPLKPDCKIWQALLGACSFHGDTEVGEYAAEQLFQTAPDSSSAHILIANIYSSRG 574
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP167_ARATH (Pentatricopeptide repeat-containing protein At2g21090 OS=Arabidopsis thaliana GN=PCMP-E48 PE=2 SV=1) HSP 1 Score: 170.629 bits (431), Expect = 4.881e-42 Identity = 80/193 (41.45%), Postives = 122/193 (63.21%), Query Frame = 3 Query: 6 MIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAA-WNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAG 581 MI+ + R + I S LID+Y+K G+L+ + VF + K + WN+MI+A HG +L + +M+ +++P+ T + I++AC H+G VE G+ +F MT ++GI EHYAC++DL GRAG + + I MPF PD +W +LG CR+HGN EL + A+ L LDP++S Y+LLS+I+AD G Sbjct: 337 MIRTNVRPNAIVISSLIDMYSKSGSLEASERVFRICDDKHDCVFWNTMISALAQHGLGHKALRMLDDMIKFRVQPNRTTLVVILNACSHSGLVEEGLRWFESMTVQHGIVPDQEHYACLIDLLGRAGCFKELMRKIEEMPFEPDKHIWNAILGVCRIHGNEELGKKAADELIKLDPESSAPYILLSSIYADHG 529
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP403_ARATH (Putative pentatricopeptide repeat-containing protein At5g37570 OS=Arabidopsis thaliana GN=PCMP-E37 PE=3 SV=1) HSP 1 Score: 170.244 bits (430), Expect = 6.375e-42 Identity = 80/182 (43.96%), Postives = 117/182 (64.29%), Query Frame = 3 Query: 27 SDNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHA 572 S + LID+ AKCG++D A +F+ M ++ ++ SM+ HG +++ LF +M++ I PD V F I+ CG + VE G+ YF M ++Y I A +HY+C+V+L R G+L +A E I SMPF A WG+LLG C +HGN E+AEV + HLF+L+PQ++G YVLLSNI+A Sbjct: 338 SSHYVVPALIDMNAKCGHMDRAAKLFEEMPQRDLVSYCSMMEGMAIHGCGSEAIRLFEKMVDEGIVPDEVAFTVILKVCGQSRLVEEGLRYFELMRKKYSILASPDHYSCIVNLLSRTGKLKEAYELIKSMPFEAHASAWGSLLGGCSLHGNTEIAEVVARHLFELEPQSAGSYVLLSNIYA 519 The following BLAST results are available for this feature:
BLAST of CX288721 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 200
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX288721 ID=CX288721; Name=CX288721; organism=Citrus clementina; type=EST; length=581bpback to top |