CX288721
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP274_ARATH (Pentatricopeptide repeat-containing protein At3g49710 OS=Arabidopsis thaliana GN=PCMP-H79 PE=2 SV=1) HSP 1 Score: 170.244 bits (430), Expect = 6.375e-42 Identity = 86/193 (44.56%), Postives = 122/193 (63.21%), Query Frame = 3 Query: 3 LMIKDSCRSDNIA-ESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADA 578 L IK S+ I+ + LI LY K GNL AR VFD M ++N MI Y HGH ++L L+ ML++ I P+ +TF+A++SAC H G+V+ G YF+ M E + I EHY+CM+DL GRAG+L +A I++MP+ P + W LLGACR H N+ LAE A++ L + P + YV+L+N++ADA Sbjct: 370 LAIKSHIPSNRISVNNALISLYYKSGNLQDARWVFDRMPELNAVSFNCMIKGYAQHGHGTEALLLYQRMLDSGIAPNKITFVAVLSACAHCGKVDEGQEYFNTMKETFKIEPEAEHYSCMIDLLGRAGKLEEAERFIDAMPYKPGSVAWAALLGACRKHKNMALAERAANELMVMQPLAATPYVMLANMYADA 562
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP175_ARATH (Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2 SV=1) HSP 1 Score: 169.859 bits (429), Expect = 8.326e-42 Identity = 79/190 (41.58%), Postives = 118/190 (62.11%), Query Frame = 3 Query: 12 KDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAG 581 K R + S LI +Y+KCG+L+ +R VF+ + ++ W++MI HG +++ +F++M +KP+ VTF + AC H G V+ FH M YGI +HYAC+VD+ GR+G L KA++ I +MP P VWG LLGAC++H N+ LAE+A + L +L+P+N G +VLLSNI+A G Sbjct: 393 KHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLNLAEMACTRLLELEPRNDGAHVLLSNIYAKLG 582 HSP 2 Score: 87.4261 bits (215), Expect = 5.435e-17 Identity = 45/151 (29.80%), Postives = 83/151 (54.97%), Query Frame = 3 Query: 30 DNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEM-LNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHG 479 DN+ + ++D YA + + AR V + M +K AWN++I+AY +G ++L +FHE+ L +K + +T ++ +SAC G +E G + H +++GI + ++ ++ + G L K+ E NS+ D VW ++G +HG Sbjct: 297 DNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELG-RWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVE-KRDVFVWSAMIGGLAMHG 445 HSP 3 Score: 72.0182 bits (175), Expect = 2.363e-12 Identity = 49/170 (28.82%), Postives = 78/170 (45.88%), Query Frame = 3 Query: 3 LMIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELA-EVASS 509 + +K + SD + LI Y CG+LD A VF + K +WNSMI + G +L LF +M + +K HVT + ++SAC +E G EE + + M+D++ + G + A ++M D W T+L + + E A EV +S Sbjct: 156 MAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFG-RQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAME-EKDNVTWTTMLDGYAISEDYEAAREVLNS 323
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PPR75_ARATH (Pentatricopeptide repeat-containing protein At1g50270 OS=Arabidopsis thaliana GN=PCMP-E42 PE=2 SV=1) HSP 1 Score: 169.474 bits (428), Expect = 1.087e-41 Identity = 80/191 (41.88%), Postives = 117/191 (61.26%), Query Frame = 3 Query: 6 MIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADA 578 MIK+S + A + LIDLY KCG L+ A VF+ + K W +MI + HG+ +D+ LF+ ML++ + P+ VTF+A++SAC H G VE G F M + + + +HYACMVDLFGR G L +A I MP P VWG L G+C +H + EL + A+S + L P +SG Y LL+N+++++ Sbjct: 332 MIKNSIEINTTAGTTLIDLYVKCGCLEEAILVFERLHEKNVYTWTAMINGFAAHGYARDAFDLFYTMLSSHVSPNEVTFMAVLSACAHGGLVEEGRRLFLSMKGRFNMEPKADHYACMVDLFGRKGLLEEAKALIERMPMEPTNVVWGALFGSCLLHKDYELGKYAASRVIKLQPSHSGRYTLLANLYSES 522 HSP 2 Score: 72.0182 bits (175), Expect = 2.363e-12 Identity = 40/152 (26.32%), Postives = 67/152 (44.08%), Query Frame = 3 Query: 24 RSDNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHG 479 + D S L+D+Y KC D A+ VFD M + W ++IA Y + +F EML + + P+ T +++SAC H G + G HC + I ++DL+ + G L +A+ + + W ++ HG Sbjct: 237 KCDVFIGSSLVDMYGKCSCYDDAQKVFDEMPSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKSDVAPNEKTLSSVLSACAHVGALHRG-RRVHCYMIKNSIEINTTAGTTLIDLYVKCGCLEEAILVFERL-HEKNVYTWTAMINGFAAHG 386
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP280_ARATH (Pentatricopeptide repeat-containing protein At3g53360, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E86 PE=2 SV=1) HSP 1 Score: 169.474 bits (428), Expect = 1.087e-41 Identity = 81/191 (42.41%), Postives = 120/191 (62.83%), Query Frame = 3 Query: 9 IKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAG 581 +K + ++ LID+YAKCG+L AR +FD M + +W+++I Y G +++L LF EM + I+P+HVTF+ +++AC H G VE G+ + M E+GI EH +C+VDL RAGRLN+A I+ M PD VW TLL AC+ GNV LA+ A+ ++ +DP NS +VLL ++HA +G Sbjct: 500 LKTGLAPEQFIKNGLIDMYAKCGSLGQARRIFDSMDNRDVVSWSTLIVGYAQSGFGEEALILFKEMKSAGIEPNHVTFVGVLTACSHVGLVEEGLKLYATMQTEHGISPTKEHCSCVVDLLARAGRLNEAERFIDEMKLEPDVVVWKTLLSACKTQGNVHLAQKAAENILKIDPFNSTAHVLLCSMHASSG 690
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PPR47_ARATH (Putative pentatricopeptide repeat-containing protein At1g17630 OS=Arabidopsis thaliana GN=PCMP-E72 PE=3 SV=1) HSP 1 Score: 169.088 bits (427), Expect = 1.420e-41 Identity = 78/192 (40.62%), Postives = 123/192 (64.06%), Query Frame = 3 Query: 6 MIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAG 581 +I+ S + + ++ L+++YAKCG L VF+ + K +WNS+I YG HG + +L++F M+++ PD + +A++SAC HAG VE G F+ M++ +G+ + EHYAC+VDL GR G L +A E + +MP P V G LL +CR+H NV++AE +S L L+P+ +G Y+LLSNI++ G Sbjct: 460 VIRTSMSENILVQNALVNMYAKCGLLSEGSLVFEAIRDKDLISWNSIIKGYGMHGFAEKALSMFDRMISSGFHPDGIALVAVLSACSHAGLVEKGREIFYSMSKRFGLEPQQEHYACIVDLLGRVGFLKEASEIVKNMPMEPKVCVLGALLNSCRMHKNVDIAEGIASQLSVLEPERTGSYMLLSNIYSAGG 651
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP252_ARATH (Pentatricopeptide repeat-containing protein At3g24000, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H87 PE=2 SV=1) HSP 1 Score: 169.088 bits (427), Expect = 1.420e-41 Identity = 80/192 (41.67%), Postives = 121/192 (63.02%), Query Frame = 3 Query: 6 MIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAG 581 MIK + A + L+D+YAK G++ AR +FD + ++ +WNS++ AY HG K+++ F EM I+P+ ++FL++++AC H+G ++ G HY+ M ++ GI HY +VDL GRAG LN+AL I MP P A +W LL ACR+H N EL A+ H+F+LDP + G +V+L NI+A G Sbjct: 288 MIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSGLLDEGWHYYELMKKD-GIVPEAWHYVTVVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASGG 478 HSP 2 Score: 70.8626 bits (172), Expect = 5.264e-12 Identity = 43/166 (25.90%), Postives = 78/166 (46.99%), Query Frame = 3 Query: 24 RSDNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFD 521 R D + + L+++YAKCG+L+ AR VF+ M ++ W ++I+ Y H D+L F++ML P+ T ++I A + G H H + G + + + ++DL+ R G ++ A +++ D + G R G + E+ L D Sbjct: 92 RHDIVMGNTLLNMYAKCGSLEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCG-HQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGMLRD 256 HSP 3 Score: 70.4774 bits (171), Expect = 6.875e-12 Identity = 39/145 (26.90%), Postives = 73/145 (50.34%), Query Frame = 3 Query: 45 SVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHG 479 S L+DLY + G +D A+ VFD + + + +WN++IA + + +L LF ML + +P H ++ ++ AC G +E G + H + G ++D++ ++G ++ A + + + D W +LL A HG Sbjct: 200 SALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQG-KWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLA-KRDVVSWNSLLTAYAQHG 342
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP145_ARATH (Pentatricopeptide repeat-containing protein At2g02980 OS=Arabidopsis thaliana GN=PCMP-H26 PE=2 SV=2) HSP 1 Score: 169.088 bits (427), Expect = 1.420e-41 Identity = 77/176 (43.75%), Postives = 113/176 (64.20%), Query Frame = 3 Query: 45 SVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHA 572 + LID++AKCG+LD A ++F+ M K AW++MI AY HG + S+ +F M + ++PD +TFL +++AC H G+VE G YF M ++GI ++HY MVDL RAG L A E I+ +P +P +W LL AC H N++LAE S +F+LD + G YV+LSN++A Sbjct: 269 TALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFERMRSENVQPDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLLSRAGNLEDAYEFIDKLPISPTPMLWRILLAACSSHNNLDLAEKVSERIFELDDSHGGDYVILSNLYA 444 HSP 2 Score: 80.4925 bits (197), Expect = 6.644e-15 Identity = 40/146 (27.40%), Postives = 75/146 (51.37%), Query Frame = 3 Query: 51 LIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVE 488 LI++Y +C ++D AR VFD + +N+MI Y ++L+LF EM +KP+ +T L+++S+C G ++ G + H +++ ++ ++D+F + G L+ A+ M + D W ++ A HG E Sbjct: 170 LINMYTECEDVDSARCVFDRIVEPCVVCYNAMITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLG-KWIHKYAKKHSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRY-KDTQAWSAMIVAYANHGKAE 313
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP329_ARATH (Pentatricopeptide repeat-containing protein At4g20770 OS=Arabidopsis thaliana GN=PCMP-E35 PE=2 SV=2) HSP 1 Score: 168.703 bits (426), Expect = 1.855e-41 Identity = 78/190 (41.05%), Postives = 117/190 (61.58%), Query Frame = 3 Query: 3 LMIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHA 572 L++K SD+ E+ L D+Y KCG +D AR FD + RK WN MI YG +G +++ L+ +M+++ KPD +TF+++++AC H+G VE G+ M +GI ++HY C+VD GRAGRL A + + P+ + +W LL +CRVHG+V LA + L LDPQ+S YVLLSN ++ Sbjct: 544 LVVKSGYVSDSFVETALTDMYCKCGEIDSARQFFDAVLRKNTVIWNEMIHGYGHNGRGDEAVGLYRKMISSGEKPDGITFVSVLTACSHSGLVETGLEILSSMQRIHGIEPELDHYICIVDCLGRAGRLEDAEKLAEATPYKSSSVLWEILLSSCRVHGDVSLARRVAEKLMRLDPQSSAAYVLLSNTYS 733
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP284_ARATH (Pentatricopeptide repeat-containing protein At3g56550 OS=Arabidopsis thaliana GN=PCMP-H80 PE=2 SV=1) HSP 1 Score: 168.318 bits (425), Expect = 2.423e-41 Identity = 76/186 (40.86%), Postives = 121/186 (65.05%), Query Frame = 3 Query: 21 CRSDNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADA 578 C S + LID+YAKCG+L+ A VF+ M ++ WNSMI YG HGH ++++ F +M+ + ++P+ +TFL ++ C H G V+ G+ +F M+ ++ + ++HY CMVDL+GRAG+L +LE I + D +W TLLG+C++H N+EL EVA L L+ N+G YVL+++I++ A Sbjct: 239 CESCVFVSNALIDMYAKCGSLENAIGVFNGMRKRDVLTWNSMIIGYGVHGHGVEAISFFRKMVASGVRPNAITFLGLLLGCSHQGLVKEGVEHFEIMSSQFHLTPNVKHYGCMVDLYGRAGQLENSLEMIYASSCHEDPVLWRTLLGSCKIHRNLELGEVAMKKLVQLEAFNAGDYVLMTSIYSAA 424
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP205_ARATH (Putative pentatricopeptide repeat-containing protein At3g01580 OS=Arabidopsis thaliana GN=PCMP-E87 PE=3 SV=2) HSP 1 Score: 168.318 bits (425), Expect = 2.423e-41 Identity = 80/193 (41.45%), Postives = 122/193 (63.21%), Query Frame = 3 Query: 6 MIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEML-NNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAG 581 +IK S+ + L++LY++CG+L A VF+ + K W S+I YG HG +L F+ M+ ++++KP+ VTFL+I+SAC HAG + G+ F M +Y + +EHYA +VDL GR G L+ A+E MPF+P + GTLLGACR+H N E+AE + LF+L+ ++GYY+L+SN++ G Sbjct: 392 VIKYGFDSNPFIGASLVELYSRCGSLGNASKVFNGIALKDTVVWTSLITGYGIHGKGTKALETFNHMVKSSEVKPNEVTFLSILSACSHAGLIHEGLRIFKLMVNDYRLAPNLEHYAVLVDLLGRVGDLDTAIEITKRMPFSPTPQILGTLLGACRIHQNGEMAETVAKKLFELESNHAGYYMLMSNVYGVKG 584 HSP 2 Score: 72.0182 bits (175), Expect = 2.363e-12 Identity = 45/172 (26.16%), Postives = 80/172 (46.51%), Query Frame = 3 Query: 3 LMIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEM-LNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHL 515 L I+ ++ + L+D+Y KC + + A VF + RK +W ++I+ + +G S+ F M L N +PD + + ++ +C G +E FH +YG + A +V+L+ R G L A + N + D VW +L+ +HG A +H+ Sbjct: 289 LAIRKGLETEVKVSTALVDMYMKCFSPEEAYAVFSRIPRKDVVSWVALISGFTLNGMAHRSIEEFSIMLLENNTRPDAILMVKVLGSCSELGFLEQA-KCFHSYVIKYGFDSNPFIGASLVELYSRCGSLGNASKVFNGIAL-KDTVVWTSLITGYGIHGKGTKALETFNHM 458 The following BLAST results are available for this feature:
BLAST of CX288721 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 200
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX288721 ID=CX288721; Name=CX288721; organism=Citrus clementina; type=EST; length=581bpback to top |