CX288721
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PPR83_ARATH (Putative pentatricopeptide repeat-containing protein At1g56570 OS=Arabidopsis thaliana GN=PCMP-E64 PE=3 SV=1) HSP 1 Score: 167.162 bits (422), Expect = 5.397e-41 Identity = 78/181 (43.09%), Postives = 121/181 (66.85%), Query Frame = 3 Query: 45 SVLIDLYAKCGNLDFARTVF-DMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVH-GNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAG 581 + LID+YAKCGN+ ++ VF +++ R+ +W SM+ YG HG+ +++ LF +M+++ I+PD + F+A++SAC HAG VE G+ YF+ M EYGI + Y C+VDL GRAG++ +A E + MPF PD WG +LGAC+ H N ++ +A+ + +L P+ G YV+LS I+A G Sbjct: 352 NALIDMYAKCGNIPDSQRVFGEIVDRRNLVSWTSMMIGYGSHGYGAEAVELFDKMVSSGIRPDRIVFMAVLSACRHAGLVEKGLKYFNVMESEYGINPDRDIYNCVVDLLGRAGKIGEAYELVERMPFKPDESTWGAILGACKAHKHNGLISRLAARKVMELKPKMVGTYVMLSYIYAAEG 532
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PPR48_ARATH (Pentatricopeptide repeat-containing protein At1g18485 OS=Arabidopsis thaliana GN=PCMP-H8 PE=2 SV=2) HSP 1 Score: 166.392 bits (420), Expect = 9.206e-41 Identity = 76/192 (39.58%), Postives = 118/192 (61.46%), Query Frame = 3 Query: 9 IKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETI-NSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAG 581 +K D LID+YAK G++ + VF+ + K A+WN+MI YG HG K+++ LF EM PD +TFL +++AC H+G + G+ Y M +G+ ++HYAC++D+ GRAG+L+KAL + M D G+W +LL +CR+H N+E+ E ++ LF+L+P+ YVLLSN++A G Sbjct: 624 LKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEMGEKVAAKLFELEPEKPENYVLLSNLYAGLG 815
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP385_ARATH (Pentatricopeptide repeat-containing protein At5g15300 OS=Arabidopsis thaliana GN=PCMP-E40 PE=2 SV=2) HSP 1 Score: 166.007 bits (419), Expect = 1.202e-40 Identity = 80/179 (44.69%), Postives = 114/179 (63.69%), Query Frame = 3 Query: 45 SVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAG 581 + LID+YAKCG++D A VF + + + WN++I H H + S+ +F EM K+ P+ VTF+ +I AC H+G+V+ G YF M + Y I ++HY CMVD+ GRAG+L +A + SM P+A VW TLLGAC+++GNVEL + A+ L + SG YVLLSNI+A G Sbjct: 319 NALIDMYAKCGSIDRAIEVFRGVKDRDLSTWNTLIVGLALH-HAEGSIEMFEEMQRLKVWPNEVTFIGVILACSHSGRVDEGRKYFSLMRDMYNIEPNIKHYGCMVDMLGRAGQLEEAFMFVESMKIEPNAIVWRTLLGACKIYGNVELGKYANEKLLSMRKDESGDYVLLSNIYASTG 496 HSP 2 Score: 82.4185 bits (202), Expect = 1.748e-15 Identity = 48/163 (29.45%), Postives = 82/163 (50.31%), Query Frame = 3 Query: 30 DNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAG----IHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVH---GNVELAE 497 D +A +V+I KC +D AR +FD K WN+MI+ Y G+ K++L +F EM + PD VT L+++SAC G +E G I+ + I + ++D++ + G +++A+E + D W TL+ +H G++E+ E Sbjct: 208 DQVAWNVMITGCLKCKEMDSARELFDRFTEKDVVTWNAMISGYVNCGYPKEALGIFKEMRDAGEHPDVVTILSLLSACAVLGDLETGKRLHIYILETASVSSSIYVGTPIWNALIDMYAKCGSIDRAIEVFRGVK-DRDLSTWNTLIVGLALHHAEGSIEMFE 369
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP357_ARATH (Pentatricopeptide repeat-containing protein At4g39530 OS=Arabidopsis thaliana GN=PCMP-E52 PE=1 SV=1) HSP 1 Score: 166.007 bits (419), Expect = 1.202e-40 Identity = 83/192 (43.23%), Postives = 116/192 (60.42%), Query Frame = 3 Query: 6 MIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAG 581 ++K + + L+D+YAKCG+ + A FD + WNS+I++Y HG K +L + +M++ I+P+++TF+ ++SAC HAG VE G+ F M +GI EHY CMV L GRAGRLNKA E I MP P A VW +LL C GNVELAE A+ DP++SG + +LSNI+A G Sbjct: 581 LLKRGLECNPYITNALLDMYAKCGSPEDAHKAFDSAASRDVVCWNSVISSYANHGEGKKALQMLEKMMSEGIEPNYITFVGVLSACSHAGLVEDGLKQFELMLR-FGIEPETEHYVCMVSLLGRAGRLNKARELIEKMPTKPAAIVWRSLLSGCAKAGNVELAEHAAEMAILSDPKDSGSFTMLSNIYASKG 771 HSP 2 Score: 77.7962 bits (190), Expect = 4.306e-14 Identity = 48/159 (30.19%), Postives = 77/159 (48.43%), Query Frame = 3 Query: 3 LMIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHG 479 LM K D A S LID+Y+ C L +R VFD M K WNSM A Y +++L LF E+ ++ +PD TF +++A G+ V+ G FHC + G+ ++D++ + G A + +S + D W +++ + HG Sbjct: 479 LMFKYGLNLDIFAGSALIDVYSNCYCLKDSRLVFDEMKVKDLVIWNSMFAGYVQQSENEEALNLFLELQLSRERPDEFTFANMVTAAGNLASVQLG-QEFHCQLLKRGLECNPYITNALLDMYAKCGSPEDAHKAFDSAA-SRDVVCWNSVISSYANHG 635 HSP 3 Score: 73.9442 bits (180), Expect = 6.218e-13 Identity = 45/151 (29.80%), Postives = 71/151 (47.02%), Query Frame = 3 Query: 6 MIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLL 458 ++K D ++LID Y K GN+D+AR VFD + K W +MI+ G SL LF++++ + + PD ++SAC +E G H YG+ ++D + + GR+ A + N MP + W TLL Sbjct: 174 LVKSGFDRDVYVGTLLIDFYLKDGNIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEDNVVPDGYILSTVLSACSILPFLEGG-KQIHAHILRYGLEMDASLMNVLIDSYVKCGRVIAAHKLFNGMP-NKNIISWTTLL 322
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP350_ARATH (Pentatricopeptide repeat-containing protein At4g35130, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H27 PE=2 SV=1) HSP 1 Score: 166.007 bits (419), Expect = 1.202e-40 Identity = 78/192 (40.62%), Postives = 120/192 (62.50%), Query Frame = 3 Query: 6 MIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAG 581 ++K S+ I + L+ +YA CG+L+ AR F+ + K +WNS+I AY HG + S+ LF EM+ +++ P+ TF ++++AC +G V+ G YF M EYGI +EHY CM+DL GR G + A + MPF P A +WG+LL A R H ++ +AE A+ +F ++ N+G YVLL N++A+AG Sbjct: 457 IVKSRYWSNTIILNSLVHMYAMCGDLEDARKCFNHILLKDVVSWNSIIMAYAVHGFGRISVWLFSEMIASRVNPNKSTFASLLAACSISGMVDEGWEYFESMKREYGIDPGIEHYGCMLDLIGRTGNFSAAKRFLEEMPFVPTARIWGSLLNASRNHKDITIAEFAAEQIFKMEHDNTGCYVLLLNMYAEAG 648 HSP 2 Score: 72.0182 bits (175), Expect = 2.363e-12 Identity = 44/150 (29.33%), Postives = 73/150 (48.67%), Query Frame = 3 Query: 36 IAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAG--IHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHG 479 + E+ LID+Y +CG L A +FD M K +WNS+IAAY +G +L LF E+ ++ + PD T +I+ A + + G IH + + + + +V ++ G L A + N + D W +++ A VHG Sbjct: 366 VLETALIDMYGECGQLKSAEVIFDRMAEKNVISWNSIIAAYVQNGKNYSALELFQELWDSSLVPDSTTIASILPAYAESLSLSEGREIHAYIVKSRYWSNTIILN---SLVHMYAMCGDLEDARKCFNHI-LLKDVVSWNSIIMAYAVHG 511
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PPR7_ARATH (Putative pentatricopeptide repeat-containing protein At1g03510 OS=Arabidopsis thaliana GN=PCMP-E3 PE=3 SV=1) HSP 1 Score: 165.236 bits (417), Expect = 2.051e-40 Identity = 74/180 (41.11%), Postives = 111/180 (61.67%), Query Frame = 3 Query: 42 ESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAG 581 +S L++ Y +CG++ + + VFD M + AW+S+I+AY HG + +L F EM K+ PD + FL ++ AC HAG + + YF M +YG+ A +HY+C+VD+ R GR +A + I +MP P A WG LLGACR +G +ELAE+A+ L ++P+N YVLL I+ G Sbjct: 220 KSGLVEAYGRCGSIVYVQLVFDSMEDRDVVAWSSLISAYALHGDAESALKTFQEMELAKVTPDDIAFLNVLKACSHAGLADEALVYFKRMQGDYGLRASKDHYSCLVDVLSRVGRFEEAYKVIQAMPEKPTAKTWGALLGACRNYGEIELAEIAARELLMVEPENPANYVLLGKIYMSVG 399
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PPR13_ARATH (Pentatricopeptide repeat-containing protein At1g05750, chloroplastic OS=Arabidopsis thaliana GN=PDE247 PE=2 SV=1) HSP 1 Score: 164.851 bits (416), Expect = 2.679e-40 Identity = 82/178 (46.07%), Postives = 112/178 (62.92%), Query Frame = 3 Query: 51 LIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHG-NVELAEVASSHLFDLDPQNSGYYVLLSNIHADAG 581 LIDLY +CG ++FAR VF M ++ +WNS+I + +G+ +SL F +M KPD VTF ++AC H G VE G+ YF M +Y I R+EHY C+VDL+ RAGRL AL+ + SMP P+ V G+LL AC HG N+ LAE HL DL+ ++ YV+LSN++A G Sbjct: 247 LIDLYCRCGCVEFARQVFYNMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEKGFKPDAVTFTGALTACSHVGLVEEGLRYFQIMKCDYRISPRIEHYGCLVDLYSRAGRLEDALKLVQSMPMKPNEVVIGSLLAACSNHGNNIVLAERLMKHLTDLNVKSHSNYVILSNMYAADG 424
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PPR45_ARATH (Pentatricopeptide repeat-containing protein At1g15510, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H73 PE=2 SV=1) HSP 1 Score: 164.081 bits (414), Expect = 4.569e-40 Identity = 71/184 (38.59%), Postives = 117/184 (63.59%), Query Frame = 3 Query: 30 DNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAG 581 D+ + L+D+Y +CG ++ A + F+ +K +WN ++ Y G + LF M+ ++++PD +TF++++ C + V G+ YF M E+YG+ ++HYAC+VDL GRAG L +A + I MP PD VWG LL ACR+H ++L E+++ H+F+LD ++ GYY+LL N++AD G Sbjct: 532 DDFLPNALLDMYVRCGRMNTAWSQFNSQ-KKDVTSWNILLTGYSERGQGSMVVELFDRMVKSRVRPDEITFISLLCGCSKSQMVRQGLMYFSKM-EDYGVTPNLKHYACVVDLLGRAGELQEAHKFIQKMPVTPDPAVWGALLNACRIHHKIDLGELSAQHIFELDKKSVGYYILLCNLYADCG 713
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP172_ARATH (Pentatricopeptide repeat-containing protein At2g27610 OS=Arabidopsis thaliana GN=PCMP-H60 PE=2 SV=1) HSP 1 Score: 164.081 bits (414), Expect = 4.569e-40 Identity = 81/191 (42.41%), Postives = 113/191 (59.16%), Query Frame = 3 Query: 9 IKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAG 581 IK S S L+ +YAK GN++ A VF K +WNSMI+ Y HG +L +F EM K+K D VTF+ + +AC HAG VE G YF M + I EH +CMVDL+ RAG+L KA++ I +MP + +W T+L ACRVH EL +A+ + + P++S YVLLSN++A++G Sbjct: 522 IKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIENMPNPAGSTIWRTILAACRVHKKTELGRLAAEKIIAMKPEDSAAYVLLSNMYAESG 712
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP425_ARATH (Pentatricopeptide repeat-containing protein At5g48910 OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1) HSP 1 Score: 163.696 bits (413), Expect = 5.967e-40 Identity = 78/186 (41.94%), Postives = 116/186 (62.37%), Query Frame = 3 Query: 24 RSDNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAG 581 R D++ S LID+Y+KCG ++ A VF+ + R+ W++MI + HG D++ F +M ++P V ++ +++AC H G VE G YF M G+ R+EHY CMVDL GR+G L++A E I +MP PD +W LLGACR+ GNVE+ + ++ L D+ P +SG YV LSN++A G Sbjct: 306 RIDDVLGSALIDMYSKCGIIEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPDDVIWKALLGACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQG 491 HSP 2 Score: 87.4261 bits (215), Expect = 5.435e-17 Identity = 41/145 (28.28%), Postives = 78/145 (53.79%), Query Frame = 3 Query: 45 SVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHG 479 +V+ID Y + G+ AR +FD M ++ +WN+MI+ Y +G KD++ +F EM I+P++VT ++++ A G +E G + H E+ GI + ++D++ + G + KA+ +P + W ++ +HG Sbjct: 212 NVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLELG-EWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIHVFERLP-RENVITWSAMINGFAIHG 354 The following BLAST results are available for this feature:
BLAST of CX288721 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 200
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX288721 ID=CX288721; Name=CX288721; organism=Citrus clementina; type=EST; length=581bpback to top |