CX288721
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP435_ARATH (Putative pentatricopeptide repeat-containing protein At5g59200, chloroplastic OS=Arabidopsis thaliana GN=PCMP-E41 PE=3 SV=1) HSP 1 Score: 160.999 bits (406), Expect = 3.868e-39 Identity = 72/183 (39.34%), Postives = 119/183 (65.03%), Query Frame = 3 Query: 33 NIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAG 581 N + LI++Y++CG+++ AR VF +M K ++N+MI+ HG +++ F +M+N +P+ VT +A+++AC H G ++ G+ F+ M + + ++EHY C+VDL GR GRL +A I ++P PD + GTLL AC++HGN+EL E + LF+ + +SG YVLLSN++A +G Sbjct: 290 NFVGNALINMYSRCGDINEARRVFRVMRDKDVISYNTMISGLAMHGASVEAINEFRDMVNRGFRPNQVTLVALLNACSHGGLLDIGLEVFNSMKRVFNVEPQIEHYGCIVDLLGRVGRLEEAYRFIENIPIEPDHIMLGTLLSACKIHGNMELGEKIAKRLFESENPDSGTYVLLSNLYASSG 472
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP296_ARATH (Pentatricopeptide repeat-containing protein At3g63370 OS=Arabidopsis thaliana GN=PCMP-H83 PE=2 SV=2) HSP 1 Score: 160.999 bits (406), Expect = 3.868e-39 Identity = 81/193 (41.97%), Postives = 117/193 (60.62%), Query Frame = 3 Query: 3 LMIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAG 581 L+ K C +IA +V +D+YA CG+L A+ VFD + RK + SMI AYG HG K ++ LF +M + + PDH++FLA++ AC HAG ++ G + M EY + EHY C+VD+ GRA + +A E + M P A VW LL ACR H E+ E+A+ L +L+P+N G VL+SN+ A+ G Sbjct: 613 LLRKGFCLEGSIAVAV-VDMYACCGDLQSAKAVFDRIERKGLLQYTSMINAYGMHGCGKAAVELFDKMRHENVSPDHISFLALLYACSHAGLLDEGRGFLKIMEHEYELEPWPEHYVCLVDMLGRANCVVEAFEFVKMMKTEPTAEVWCALLAACRSHSEKEIGEIAAQRLLELEPKNPGNLVLVSNVFAEQG 804
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP255_ARATH (Putative pentatricopeptide repeat-containing protein At3g25970 OS=Arabidopsis thaliana GN=PCMP-E46 PE=3 SV=2) HSP 1 Score: 160.614 bits (405), Expect = 5.052e-39 Identity = 84/192 (43.75%), Postives = 114/192 (59.38%), Query Frame = 3 Query: 3 LMIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEA-AWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHAD 575 L K S+ S LI +Y+KCG ++ AR F + K AWN+MI Y HG + SL LF +M N +K DHVTF AI++AC H G ++ G+ + M Y I RMEHYA VDL GRAG +NKA E I SMP PD V T LG CR G +E+A ++HL +++P++ YV LS++++D Sbjct: 433 LATKSGFVSNEFVISSLIVMYSKCGIIESARKCFQQISSKHSTVAWNAMILGYAQHGLGQVSLDLFSQMCNQNVKLDHVTFTAILTACSHTGLIQEGLELLNLMEPVYKIQPRMEHYAAAVDLLGRAGLVNKAKELIESMPLNPDPMVLKTFLGVCRACGEIEMATQVANHLLEIEPEDHFTYVSLSHMYSD 624
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PPR10_ARATH (Pentatricopeptide repeat-containing protein At1g04840 OS=Arabidopsis thaliana GN=PCMP-H64 PE=2 SV=1) HSP 1 Score: 160.229 bits (404), Expect = 6.597e-39 Identity = 73/192 (38.02%), Postives = 111/192 (57.81%), Query Frame = 3 Query: 6 MIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAG 581 ++ + + D + L+D+YAKCG LD A TVF M K +W +MI + HG ++ F +M+ + KPD V FLA+++AC ++ +V+ G+++F M +Y I ++HY +VDL GRAG+LN+A E + +MP PD W L AC+ H AE S +L +LDP+ G Y+ L HA G Sbjct: 319 ILDNGIKLDRAIGTALVDMYAKCGELDCAATVFSNMNHKDILSWTAMIQGWAVHGRFHQAIQCFRQMMYSGEKPDEVVFLAVLTACLNSSEVDLGLNFFDSMRLDYAIEPTLKHYVLVVDLLGRAGKLNEAHELVENMPINPDLTTWAALYRACKAHKGYRRAESVSQNLLELDPELCGSYIFLDKTHASKG 510 HSP 2 Score: 70.0922 bits (170), Expect = 8.979e-12 Identity = 41/150 (27.33%), Postives = 72/150 (48.00%), Query Frame = 3 Query: 45 SVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELA 494 S LI Y G L+ A+ +F++M K +W ++I + G + +++ + EML +KP+ T A++SAC +G + +GI H + GI +VD++ + G L+ A ++M D W ++ VHG A Sbjct: 231 STLIKGYVDSGELNRAKQLFELMPEKNVVSWTTLINGFSQTGDYETAISTYFEMLEKGLKPNEYTIAAVLSACSKSGALGSGIR-IHGYILDNGIKLDRAIGTALVDMYAKCGELDCAATVFSNMNH-KDILSWTAMIQGWAVHGRFHQA 378
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP427_ARATH (Pentatricopeptide repeat-containing protein At5g50390, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H58 PE=2 SV=1) HSP 1 Score: 160.229 bits (404), Expect = 6.597e-39 Identity = 74/192 (38.54%), Postives = 116/192 (60.42%), Query Frame = 3 Query: 6 MIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAG 581 +I++ S+ +A + L+D Y+K G +D AR VFD + RK +WN+++ Y HG D++ LF +M+ + P+HVTFLA++SAC ++G E G F M+E +GI R HYACM++L GR G L++A+ I P +W LL ACR+ N+EL V + L+ + P+ G YV++ N++ G Sbjct: 351 LIRNGFESEIVANTALVDFYSKWGRVDTARYVFDKLPRKNIISWNALMGGYANHGRGTDAVKLFEKMIAANVAPNHVTFLAVLSACAYSGLSEQGWEIFLSMSEVHGIKPRAMHYACMIELLGRDGLLDEAIAFIRRAPLKTTVNMWAALLNACRMQENLELGRVVAEKLYGMGPEKLGNYVVMYNMYNSMG 542 HSP 2 Score: 74.3294 bits (181), Expect = 4.761e-13 Identity = 40/143 (27.97%), Postives = 71/143 (49.65%), Query Frame = 3 Query: 51 LIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHG 479 LID+Y+KCG+++ AR F+ M K AWN++IA Y HG+ +++L L ++M ++ + D T +I ++E H G + + +VD + + GR++ A + +P + W L+G HG Sbjct: 265 LIDMYSKCGDIEDARCAFECMPEKTTVAWNNVIAGYALHGYSEEALCLLYDMRDSGVSIDQFTLSIMIRISTKLAKLEL-TKQAHASLIRNGFESEIVANTALVDFYSKWGRVDTARYVFDKLP-RKNIISWNALMGGYANHG 405
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP201_ARATH (Pentatricopeptide repeat-containing protein At2g44880 OS=Arabidopsis thaliana GN=PCMP-E9 PE=2 SV=2) HSP 1 Score: 160.229 bits (404), Expect = 6.597e-39 Identity = 78/176 (44.32%), Postives = 115/176 (65.34%), Query Frame = 3 Query: 45 SVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHA 572 + ++D+Y+KCG ++ A+ +FD M KQ A+WN+MI Y +G+ + +L LF M+ + KPD +T LA+I+AC H G VE G +FH M E G+ A++EHY CMVDL GRAG L +A + I +MPF P+ + + L AC + ++E AE +L+PQN G YVLL N++A Sbjct: 313 TAILDMYSKCGEIEKAKRIFDEMPEKQVASWNAMIHGYALNGNARAALDLFVTMMIEE-KPDEITMLAVITACNHGGLVEEGRKWFHVM-REMGLNAKIEHYGCMVDLLGRAGSLKEAEDLITNMPFEPNGIILSSFLSACGQYKDIERAERILKKAVELEPQNDGNYVLLRNLYA 486 HSP 2 Score: 70.8626 bits (172), Expect = 5.264e-12 Identity = 38/154 (24.68%), Postives = 72/154 (46.75%), Query Frame = 3 Query: 36 IAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEM-LNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELA 494 I + +I Y ++D AR +FD M + +WN+MI Y + ++ + LF EM + PD VT L+++ A G + G + HC + + +++ ++D++ + G + KA + MP W ++ ++GN A Sbjct: 208 ITWTTMIHGYCNIKDIDAARKLFDAMPERNLVSWNTMIGGYCQNKQPQEGIRLFQEMQATTSLDPDDVTILSVLPAISDTGALSLG-EWCHCFVQRKKLDKKVKVCTAILDMYSKCGEIEKAKRIFDEMP-EKQVASWNAMIHGYALNGNARAA 359
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP428_ARATH (Pentatricopeptide repeat-containing protein At5g50990 OS=Arabidopsis thaliana GN=PCMP-H59 PE=2 SV=2) HSP 1 Score: 159.844 bits (403), Expect = 8.617e-39 Identity = 78/190 (41.05%), Postives = 113/190 (59.47%), Query Frame = 3 Query: 3 LMIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHA 572 LMI + I S L+D+YAKCG++ +R VF + R + WN+MI + HG +++ +F EM + PD +TFL +++ C H G +E G YF M+ + I ++EHY MVDL GRAGR+ +A E I SMP PD +W +LL + R + N EL E+A + +L SG YVLLSNI++ Sbjct: 190 LMIDSGIELNAILSSALVDVYAKCGDIGTSREVFYSVKRNDVSIWNAMITGFATHGLATEAIRVFSEMEAEHVSPDSITFLGLLTTCSHCGLLEEGKEYFGLMSRRFSIQPKLEHYGAMVDLLGRAGRVKEAYELIESMPIEPDVVIWRSLLSSSRTYKNPELGEIA---IQNLSKAKSGDYVLLSNIYS 376
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP295_ARATH (Pentatricopeptide repeat-containing protein At3g62890 OS=Arabidopsis thaliana GN=PCMP-H82 PE=2 SV=1) HSP 1 Score: 159.844 bits (403), Expect = 8.617e-39 Identity = 80/186 (43.01%), Postives = 117/186 (62.90%), Query Frame = 3 Query: 30 DNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEA-AWNSMIAAYGCHGHLKDSLALFHEML-NNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAG 581 D + + LID+YAKCG+L+ A+ VF+ + K++ A+++MI +G + LF EM ++ I P+ VTF+ I+ AC H G + G YF M EE+GI ++HY CMVDL+GR+G + +A I SMP PD +WG+LL R+ G+++ E A L +LDP NSG YVLLSN++A G Sbjct: 233 DIVLGTALIDMYAKCGSLERAKRVFNALGSKKDVKAYSAMICCLAMYGLTDECFQLFSEMTTSDNINPNSVTFVGILGACVHRGLINEGKSYFKMMIEEFGITPSIQHYGCMVDLYGRSGLIKEAESFIASMPMEPDVLIWGSLLSGSRMLGDIKTCEGALKRLIELDPMNSGAYVLLSNVYAKTG 418 HSP 2 Score: 77.0258 bits (188), Expect = 7.345e-14 Identity = 43/160 (26.88%), Postives = 79/160 (49.38%), Query Frame = 3 Query: 15 DSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNK-----IKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHG 479 DS D A + +++ YAK G +D AR +FD M + +W+ +I Y G K++L LF EM K ++P+ T ++SACG G +E G + H ++Y + + ++D++ + G L +A N++ D + ++ ++G Sbjct: 122 DSGSKDLPAWNSVVNAYAKAGLIDDARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEAFVRPNEFTMSTVLSACGRLGALEQG-KWVHAYIDKYHVEIDIVLGTALIDMYAKCGSLERAKRVFNALGSKKDVKAYSAMICCLAMYG 280
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PP429_ARATH (Putative pentatricopeptide repeat-containing protein At5g52630 OS=Arabidopsis thaliana GN=PCMP-H52 PE=3 SV=1) HSP 1 Score: 159.458 bits (402), Expect = 1.125e-38 Identity = 84/193 (43.52%), Postives = 116/193 (60.10%), Query Frame = 3 Query: 3 LMIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAG 581 L IK S S + S L+ LY+KCG + A VF+ + K WN+M+ AY H H + + LF M + +KP+ +TFL +++AC HAG V+ G +YF M E P +HYA +VD+ GRAGRL +ALE I +MP P VWG LL +C VH N ELA A+ +F+L P +SG ++ LSN +A G Sbjct: 242 LSIKSSFDSSSFVGSSLVSLYSKCGVPEGAYQVFNEVPVKNLGIWNAMLKAYAQHSHTQKVIELFKRMKLSGMKPNFITFLNVLNACSHAGLVDEGRYYFDQMKESRIEPTD-KHYASLVDMLGRAGRLQEALEVITNMPIDPTESVWGALLTSCTVHKNTELAAFAADKVFELGPVSSGMHISLSNAYAADG 433 HSP 2 Score: 76.2554 bits (186), Expect = 1.253e-13 Identity = 43/162 (26.54%), Postives = 80/162 (49.38%), Query Frame = 3 Query: 3 LMIKDSCRSDNIAESVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNNKIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVE 488 L +K +D S L+D+YAKCG + +AR +FD M ++ W+ M+ Y G +++L LF E L + + +F ++IS C ++ +E G H ++ + + + +V L+ + G A + N +P + G+W +L A H + + Sbjct: 141 LSMKTGYDADVFVGSSLVDMYAKCGEIVYARKMFDEMPQRNVVTWSGMMYGYAQMGENEEALWLFKEALFENLAVNDYSFSSVISVCANSTLLELG-RQIHGLSIKSSFDSSSFVGSSLVSLYSKCGVPEGAYQVFNEVP-VKNLGIWNAMLKAYAQHSHTQ 300
BLAST of CX288721 vs. ExPASy Swiss-Prot
Match: PPR23_ARATH (Pentatricopeptide repeat-containing protein At1g09190 OS=Arabidopsis thaliana GN=PCMP-E70 PE=2 SV=1) HSP 1 Score: 159.073 bits (401), Expect = 1.470e-38 Identity = 75/180 (41.67%), Postives = 114/180 (63.33%), Query Frame = 3 Query: 45 SVLIDLYAKCGNLDFARTVFDMMXRKQEAAWNSMIAAYGCHGHLKDSLALFHEMLNN-KIKPDHVTFLAIISACGHAGQVEAGIHYFHCMTEEYGIPARMEHYACMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQNSGYYVLLSNIHADAG 581 + L+D Y K G+L+ A +F M R+ +WN++I+ +G + + LF M+ K+ P+ TFL +++ C + GQVE G F M E + + AR EHY MVDL R+GR+ +A + + +MP +A +WG+LL ACR HG+V+LAEVA+ L ++P NSG YVLLSN++A+ G Sbjct: 274 NALVDFYCKSGDLEAATAIFRKMQRRNVVSWNTLISGSAVNGKGEFGIDLFDAMIEEGKVAPNEATFLGVLACCSYTGQVERGEELFGLMMERFKLEARTEHYGAMVDLMSRSGRITEAFKFLKNMPVNANAAMWGSLLSACRSHGDVKLAEVAAMELVKIEPGNSGNYVLLSNLYAEEG 453 The following BLAST results are available for this feature:
BLAST of CX288721 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 200
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX288721 ID=CX288721; Name=CX288721; organism=Citrus clementina; type=EST; length=581bpback to top |