CX288736
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_ANAVT (50S ribosomal protein L18 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rplR PE=3 SV=1) HSP 1 Score: 140.969 bits (354), Expect = 3.463e-33 Identity = 69/117 (58.97%), Postives = 88/117 (75.21%), Query Frame = 1 Query: 178 TKREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGL 528 T+RE + RH R++ K+ G+PERPRL VFRSN+H+Y QVIDDT+ HTL SAST++ + L +SG E S ++G++IA LEKGITKV FDRGG YHGRI+ALA+AARE GL Sbjct: 4 TRRESKQRRHRRVRGKVQGSPERPRLAVFRSNEHIYAQVIDDTQHHTLVSASTVEPEVKSSL--ASGANCEASSQIGKLIAVRSLEKGITKVVFDRGGNLYHGRIKALAEAAREAGL 118
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_ANASP (50S ribosomal protein L18 OS=Anabaena sp. (strain PCC 7120) GN=rplR PE=3 SV=1) HSP 1 Score: 140.969 bits (354), Expect = 3.463e-33 Identity = 69/117 (58.97%), Postives = 89/117 (76.07%), Query Frame = 1 Query: 178 TKREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGL 528 T+RE + RH R++ K+ G+PERPRL VFRSN+H+Y QVIDDT+ HTLA+AST++ + L +SG E S ++G++IA LEKGITKV FDRGG YHGRI+ALA+AARE GL Sbjct: 4 TRRESKERRHRRVRGKVQGSPERPRLAVFRSNEHIYAQVIDDTQHHTLAAASTVEPELKSSL--ASGSNCEASAQIGKLIAARSLEKGITKVVFDRGGNLYHGRIKALAEAAREAGL 118
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_GEOTN (50S ribosomal protein L18 OS=Geobacillus thermodenitrificans (strain NG80-2) GN=rplR PE=3 SV=1) HSP 1 Score: 139.043 bits (349), Expect = 1.316e-32 Identity = 70/113 (61.95%), Postives = 84/113 (74.34%), Query Frame = 1 Query: 193 RTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531 R RH+RI+KKI GT ERPRL VFRSNKH+Y Q+IDD K T+ SAST+ K E S I+ +KKVGE++AK LEKGI +V FDRGGY YHGR++ALADAARE GL+ Sbjct: 11 RKKRHARIRKKIFGTAERPRLSVFRSNKHIYAQIIDDVKSATIVSASTLDK----EFSLDSTNNIDAAKKVGELVAKRALEKGIKQVVFDRGGYLYHGRVKALADAAREAGLE 119
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_SYNP2 (50S ribosomal protein L18 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=rplR PE=3 SV=1) HSP 1 Score: 138.272 bits (347), Expect = 2.245e-32 Identity = 69/117 (58.97%), Postives = 87/117 (74.36%), Query Frame = 1 Query: 178 TKREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGL 528 T+++ RH RI+++++GT +RPRL VFRS+KH+Y QVIDD K HTL +AST+ K + EL +SG I S VG +IAK LEKGITKV FDRGG YHGR++ALADAARE GL Sbjct: 4 TRKQLTQRRHFRIRRRVEGTGDRPRLAVFRSHKHIYAQVIDDEKQHTLVAASTLDKDLKGEL--ASGGNISASTAVGNLIAKRALEKGITKVVFDRGGNLYHGRVKALADAAREAGL 118
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_CALS8 (50S ribosomal protein L18 OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=rplR PE=3 SV=1) HSP 1 Score: 137.117 bits (344), Expect = 5.001e-32 Identity = 66/117 (56.41%), Postives = 88/117 (75.21%), Query Frame = 1 Query: 181 KREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531 + E R RH RI+KK+ GT ERPRLCV++S K++Y Q+IDD K HTL +AS+++ I L +S +IE ++ +G +IA+ EKGITKV FDRGGYPYHGR++ALADAARE GL+ Sbjct: 7 RNEKRLIRHKRIRKKVFGTAERPRLCVYKSLKYIYAQIIDDEKGHTLVAASSLEPEIKSRL--TSTKSIEAAQYIGRVIAERAKEKGITKVVFDRGGYPYHGRVKALADAAREAGLE 121
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_AQUAE (50S ribosomal protein L18 OS=Aquifex aeolicus GN=rplR PE=3 SV=1) HSP 1 Score: 136.732 bits (343), Expect = 6.532e-32 Identity = 67/121 (55.37%), Postives = 84/121 (69.42%), Query Frame = 1 Query: 169 RPRTKREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531 R +T+RE R RH RI+KK+ GTPERPRLCV+RS KH Y Q+IDDT HTL SAST+ G +I+ ++ V E+IA+ LEKGI KV FDRGG+ YHG+I+A AD RE GL+ Sbjct: 3 RLKTRREKRLRRHKRIRKKVFGTPERPRLCVYRSLKHFYAQIIDDTIGHTLVSASTLDPEFEKITGKRGGKSIKDAEVVAEIIARRALEKGIKKVVFDRGGFKYHGKIKAFADKCREMGLE 123
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_DICTD (50S ribosomal protein L18 OS=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) GN=rplR PE=3 SV=1) HSP 1 Score: 135.576 bits (340), Expect = 1.455e-31 Identity = 66/119 (55.46%), Postives = 91/119 (76.47%), Query Frame = 1 Query: 175 RTKREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531 R+++E R RH RI+KKI GTPERPRL V++S +++Y Q+IDDTK HTL +AS+++K + +L S IE +K VGE+IAK LEKGI +V FDRGG+ YHG+++ALAD+AR GL+ Sbjct: 5 RSRKELRRIRHLRIRKKITGTPERPRLAVYKSLRYIYAQIIDDTKGHTLVAASSLEKELRSQL--KSTKNIEAAKLVGEVIAKRALEKGIKRVVFDRGGFLYHGKVKALADSARAAGLE 121
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_DICT6 (50S ribosomal protein L18 OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) GN=rplR PE=3 SV=1) HSP 1 Score: 134.806 bits (338), Expect = 2.482e-31 Identity = 68/119 (57.14%), Postives = 90/119 (75.63%), Query Frame = 1 Query: 175 RTKREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531 R+++E R RH RI+KKI GT ERPRL V++S +++Y Q+IDDTK HTL SAS+++K I +L S IE +K VGE+IAK LEKGI KV FDRGG+ YHG+++ALAD+AR GL+ Sbjct: 5 RSRKELRKIRHLRIRKKIIGTSERPRLAVYKSLRYIYAQIIDDTKGHTLVSASSLEKEIRSQL--KSTKNIEAAKLVGEVIAKRALEKGIKKVVFDRGGFLYHGKVKALADSARAAGLE 121
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_AQUPY (50S ribosomal protein L18 OS=Aquifex pyrophilus GN=rplR PE=3 SV=1) HSP 1 Score: 134.806 bits (338), Expect = 2.482e-31 Identity = 66/121 (54.55%), Postives = 83/121 (68.60%), Query Frame = 1 Query: 169 RPRTKREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531 R +T+RE R RH RI+KK+ GTPERPRLCV+RS H Y Q+IDDT HTL SAST+ G +I+ ++ V E+IA+ LEKGI KV FDRGG+ YHG+I+A AD RE GL+ Sbjct: 3 RLKTRREKRLRRHKRIRKKVFGTPERPRLCVYRSLNHFYAQIIDDTIGHTLVSASTLDPEFEKITGKRGGKSIKDAEVVAEIIARRALEKGIKKVVFDRGGFKYHGKIKAFADKCREMGLE 123
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_ACAM1 (50S ribosomal protein L18 OS=Acaryochloris marina (strain MBIC 11017) GN=rplR PE=3 SV=1) HSP 1 Score: 134.42 bits (337), Expect = 3.242e-31 Identity = 65/118 (55.08%), Postives = 87/118 (73.73%), Query Frame = 1 Query: 178 TKREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531 T+R+ +RH R+++K+ GT ERPRL VFRSN+H+Y QVIDD + HTLA+AST + +L SSG T + S VG+++A+ +EKGI V FDRGG YHGR++ALADAARE GL+ Sbjct: 4 TRRDATRSRHQRVRRKVVGTAERPRLAVFRSNQHIYAQVIDDAQQHTLAAAST----VESDLKSSSGATCDASTAVGKLVAERAIEKGIKAVVFDRGGNLYHGRVKALADAAREAGLE 117 The following BLAST results are available for this feature:
BLAST of CX288736 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX288736 ID=CX288736; Name=CX288736; organism=Citrus clementina; type=EST; length=532bpback to top |